ClCG09G013034 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG09G013034
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Gag-pro-like protein
Location	CG_Chr09: 17250718 .. 17251824 (+)
RNA-Seq Expression	ClCG09G013034
Synteny	ClCG09G013034

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAAGAAGAATAAGAGATTACTAAGAGATGTTGATGTTTTGCTGCACAATGAGGCGGAAACACAAAAGAAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAGGTTGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAAGCCGCATCATCCCAAAAGATTGTTGCAGAGGTTGAGAATCTACAAAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTAGAATATAGAAACCTACTTCTCTAGGAAGTTGTTAAAAGTTTTGAACACCAATTGTTGATGTGTCGCAATGTGCGAGAGGTGGTGACAAACGACTATGCTCAGCTGAAGAAAGAATATCAGGAAATGTCAGCAGATTTTGCGGTATGAAGAGATGAGTATAGTATGTTGAGACGCGATTACAACAACGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATCAATTCGCAGCACAAGCTACAACCCTCTAACAAGGCATCGTACCCATGCGACCTGACAGCAAGGAGTTGTCTCGTTTTCTAGGGATCATTAGGCAATACCTTGGGCGTTTTGGGTGGTATCATTAGATTTTAGAGTCATTAGTGTTTGGGCATATACTTTGCATCATACTATTGTAGGATTTTTGCTTTAAAATCAATATATGTCATTTTGCATTTGTCTTCCTCTCTCTCTTTCTCTCTCTCTGGCTAATAAAACCATTATTTATTTCTCTTACAAATAATAAAGGTTCAAAGTTTACAAAAATAGCTCGAAGTTCTCCTCCTCACCATCCCTACTGGACAAGACGAAAGGCAAGAATAATGGATGATCAAGTTAATGATCAGGTTCAGGCAGTGCGTCAGGACGTGGAAGAGTTGAAGGAGCAGTTAACAAAAATTCTAGAATTAATCACCGCTGGAAGAGGAAAGAATGTTGTGGAAGCTTCGTCACAAGTTGAAATTGGTCTGAATCAGACATTAGAAGTGTCACACCTAATACCAACTTGTCACACCCCCTCCCAGATTATCGTGCTCAACCCAAGAGGAGATGTGAGGACAGTAAACATCACCCCTTTTATGACATAA

mRNA sequence

ATGAAAAAGAAGAATAAGAGATTACTAAGAGATGTTGATGTTTTGCTGCACAATGAGGCGGAAACACAAAAGAAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAGGTTGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAAGCCGCATCATCCCAAAAGATTGTTGCAGAGGTTGAGAATCTACAAAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTGGTGACAAACGACTATGCTCAGCTGAAGAAAGAATATCAGGAAATGTCAGCAGATTTTGCGGGATCATTAGGCAATACCTTGGGCGTTTTGGGTGGTTCAAAGTTTACAAAAATAGCTCGAAGTTCTCCTCCTCACCATCCCTACTGGACAAGACGAAAGGCAAGAATAATGGATGATCAAGTTAATGATCAGGTTCAGGCAGTGCGTCAGGACGTGGAAGAGTTGAAGGAGCAGTTAACAAAAATTCTAGAATTAATCACCGCTGGAAGAGGAAAGAATGTTGTGGAAGCTTCGTCACAAGTTGAAATTGGTCTGAATCAGACATTAGAAGTGTCACACCTAATACCAACTTGTCACACCCCCTCCCAGATTATCGTGCTCAACCCAAGAGGAGATGTGAGGACAGTAAACATCACCCCTTTTATGACATAA

Coding sequence (CDS)

ATGAAAAAGAAGAATAAGAGATTACTAAGAGATGTTGATGTTTTGCTGCACAATGAGGCGGAAACACAAAAGAAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAGGTTGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAAGCCGCATCATCCCAAAAGATTGTTGCAGAGGTTGAGAATCTACAAAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTGGTGACAAACGACTATGCTCAGCTGAAGAAAGAATATCAGGAAATGTCAGCAGATTTTGCGGGATCATTAGGCAATACCTTGGGCGTTTTGGGTGGTTCAAAGTTTACAAAAATAGCTCGAAGTTCTCCTCCTCACCATCCCTACTGGACAAGACGAAAGGCAAGAATAATGGATGATCAAGTTAATGATCAGGTTCAGGCAGTGCGTCAGGACGTGGAAGAGTTGAAGGAGCAGTTAACAAAAATTCTAGAATTAATCACCGCTGGAAGAGGAAAGAATGTTGTGGAAGCTTCGTCACAAGTTGAAATTGGTCTGAATCAGACATTAGAAGTGTCACACCTAATACCAACTTGTCACACCCCCTCCCAGATTATCGTGCTCAACCCAAGAGGAGATGTGAGGACAGTAAACATCACCCCTTTTATGACATAA

Protein sequence

MKKKNKRLLRDVDVLLHNEAETQKKYIKELQQELERMNKVVANFQSALEEQAASSQKIVAEVENLQNSAKEYKSQLTEVVTNDYAQLKKEYQEMSADFAGSLGNTLGVLGGSKFTKIARSSPPHHPYWTRRKARIMDDQVNDQVQAVRQDVEELKEQLTKILELITAGRGKNVVEASSQVEIGLNQTLEVSHLIPTCHTPSQIIVLNPRGDVRTVNITPFMT

Homology

[Close]

BLAST of ClCG09G013034 vs. NCBI nr
Match: KAA0059732.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-26
Identity = 72/125 (57.60%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 78  EVVTNDYAQLKKEYQEMSADFAGSLGNTLGVLGGSKFTKIARSSPPHHPYWTRRKARIMD 137
           +VVTNDYAQL ++YQEMS DF         +      T   + SPP HPYWTRRKARIMD
Sbjct: 87  KVVTNDYAQLIEKYQEMSIDFM--------MWKDEYETLRPQGSPPQHPYWTRRKARIMD 146

Query: 138 DQVNDQVQAVRQDVEELKEQLTKILELITAGRGKNVVEASSQVEIGLNQTLEVSHLIPTC 197
           ++ NDQVQAV QDVE LK+QLTKILEL+T GRGK++V  SSQVE+ L Q LE     P+ 
Sbjct: 147 EKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYPSG 203

Query: 198 HTPSQ 203
            TP +
Sbjct: 207 FTPQR 203

[Close]

BLAST of ClCG09G013034 vs. NCBI nr
Match: KAA0060308.1 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa] >TYK22057.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-23
Identity = 62/91 (68.13%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 112 SKFTKIARSSPPHHPYWTRRKARIMDDQVNDQVQAVRQDVEELKEQLTKILELITAGRGK 171
           +K  KIA+ SPP HPYWTRRKARIMD+Q NDQVQAVRQDVE LK+QL KILEL+T GRGK
Sbjct: 25  AKTCKIAQGSPPQHPYWTRRKARIMDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGK 84

Query: 172 NVVEASSQVEIGLNQTLEVSHLIPTCHTPSQ 203
           +VV  SSQVE+ LNQ LE     P   TP +
Sbjct: 85  SVVGISSQVEVDLNQVLEDMPAYPLGFTPQR 115

[Close]

BLAST of ClCG09G013034 vs. NCBI nr
Match: TYK10943.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-21
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 116 KIARSSPPHHPYWTRRKARIMDDQVNDQVQAVRQDVEELKEQLTKILELITAGRGKNVVE 175
           KIA+ SPP HPYWTRRKA+I+D+Q ND VQAVRQ VE LK+QLTKILEL+T GRGK V  
Sbjct: 59  KIAQGSPPQHPYWTRRKAQIIDEQTNDLVQAVRQHVEGLKDQLTKILELLTNGRGKTVAG 118

Query: 176 ASSQVEIGLNQTLEVSHLIPTCHTPSQI 204
            SSQVE+ LNQ LE     P+  TP ++
Sbjct: 119 TSSQVEVDLNQVLEDMSAYPSSFTPQRL 146

[Close]

BLAST of ClCG09G013034 vs. NCBI nr
Match: KAA0049672.1 (uncharacterized protein E6C27_scaffold76G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 2.3e-15
Identity = 79/202 (39.11%), Postives = 108/202 (53.47%), Query Frame = 0


Query: 1   MKKKNKRLLRDVDVLLHNEAETQKKYIKELQQELERMNKVVANFQSALEEQAASSQKIVA 60
           ++KKNKRLLR++   LH E E +K  I     E+E +   +  ++S   E A S  + + 
Sbjct: 54  VRKKNKRLLRNI-ADLHEEMEAKKTAI-----EIEVLQHSIKEYKSQFIE-AKSKNRFLQ 113

Query: 61  EVENLQNSAKEYKSQLTEVVTNDYAQLKKEYQEMSADFAGSLGNTLGVLGGSKFTKIARS 120
           +V N   S      +  EVVT+DYAQL ++YQEM  DF         ++   ++  +   
Sbjct: 114 KVVNSSESQLLICRKAREVVTDDYAQLIEKYQEMLIDF---------MMWKDEYETL--- 173

Query: 121 SPPHHPYWTRRKARIMDDQVNDQVQAVRQDVEELKEQLTKILELITAGRGKNVVEASSQV 180
                    RRK    DD +      V QDVE LK+QLTKILEL+T GRGK+VV  SSQV
Sbjct: 174 ---------RRK---YDDAI------VHQDVEGLKDQLTKILELLTTGRGKSVVGTSSQV 218

Query: 181 EIGLNQTLEVSHLIPTCHTPSQ 203
           E+ LNQ LE  H  P+  TP +
Sbjct: 234 EVDLNQVLEDMHAYPSGFTPQR 218

[Close]

BLAST of ClCG09G013034 vs. NCBI nr
Match: KAA0025178.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 8.2e-13
Identity = 74/214 (34.58%), Postives = 92/214 (42.99%), Query Frame = 0


Query: 1   MKKKNKRLLRDVDVLLHNEAETQKKYIKELQQELERMNKVVANFQSALEEQAASSQKIVA 60
           ++KKNKRLLR++   LH E E +K  I +L+ E+ER+N V   FQ+AL EQA SSQ+   
Sbjct: 54  VRKKNKRLLRNI-TNLHEEIEAKKVCITDLKHEVERLNGVALEFQNALHEQATSSQQTAI 113

Query: 61  EVENLQNSAKEYKSQLTEVVTNDYAQLKKEYQEMSADFAGSLGNTLGVLGGSKFTKIARS 120
           E+E                                                         
Sbjct: 114 EIE--------------------------------------------------------- 173

Query: 121 SPPHHPYWTRRKARIMDDQVNDQVQAVRQDVEELKEQLTKILELITAGRGKNVVEASSQV 180
                                  VQAVRQD+E LK+QL KILEL+T GRGK+V E SSQV
Sbjct: 174 -----------------------VQAVRQDIEGLKDQLAKILELLTTGRGKSVAETSSQV 184

Query: 181 EIGLNQTLEVSHLIPTCHTPSQIIVLNPRGDVRT 215
           E+ LNQ LE     P   TP +    NPR   RT
Sbjct: 234 EVDLNQVLENMPAYPPGFTPQR--SSNPRMVDRT 184

[Close]

BLAST of ClCG09G013034 vs. ExPASy TrEMBL
Match: A0A5A7UUY2 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold551G00080 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.9e-27
Identity = 72/125 (57.60%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 78  EVVTNDYAQLKKEYQEMSADFAGSLGNTLGVLGGSKFTKIARSSPPHHPYWTRRKARIMD 137
           +VVTNDYAQL ++YQEMS DF         +      T   + SPP HPYWTRRKARIMD
Sbjct: 87  KVVTNDYAQLIEKYQEMSIDFM--------MWKDEYETLRPQGSPPQHPYWTRRKARIMD 146

Query: 138 DQVNDQVQAVRQDVEELKEQLTKILELITAGRGKNVVEASSQVEIGLNQTLEVSHLIPTC 197
           ++ NDQVQAV QDVE LK+QLTKILEL+T GRGK++V  SSQVE+ L Q LE     P+ 
Sbjct: 147 EKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYPSG 203

Query: 198 HTPSQ 203
            TP +
Sbjct: 207 FTPQR 203

[Close]

BLAST of ClCG09G013034 vs. ExPASy TrEMBL
Match: A0A5D3DEF4 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00350 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-24
Identity = 62/91 (68.13%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 112 SKFTKIARSSPPHHPYWTRRKARIMDDQVNDQVQAVRQDVEELKEQLTKILELITAGRGK 171
           +K  KIA+ SPP HPYWTRRKARIMD+Q NDQVQAVRQDVE LK+QL KILEL+T GRGK
Sbjct: 25  AKTCKIAQGSPPQHPYWTRRKARIMDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGK 84

Query: 172 NVVEASSQVEIGLNQTLEVSHLIPTCHTPSQ 203
           +VV  SSQVE+ LNQ LE     P   TP +
Sbjct: 85  SVVGISSQVEVDLNQVLEDMPAYPLGFTPQR 115

[Close]

BLAST of ClCG09G013034 vs. ExPASy TrEMBL
Match: A0A5D3CGB5 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00250 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-21
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 116 KIARSSPPHHPYWTRRKARIMDDQVNDQVQAVRQDVEELKEQLTKILELITAGRGKNVVE 175
           KIA+ SPP HPYWTRRKA+I+D+Q ND VQAVRQ VE LK+QLTKILEL+T GRGK V  
Sbjct: 59  KIAQGSPPQHPYWTRRKAQIIDEQTNDLVQAVRQHVEGLKDQLTKILELLTNGRGKTVAG 118

Query: 176 ASSQVEIGLNQTLEVSHLIPTCHTPSQI 204
            SSQVE+ LNQ LE     P+  TP ++
Sbjct: 119 TSSQVEVDLNQVLEDMSAYPSSFTPQRL 146

[Close]

BLAST of ClCG09G013034 vs. ExPASy TrEMBL
Match: A0A5A7U1L8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00070 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-15
Identity = 79/202 (39.11%), Postives = 108/202 (53.47%), Query Frame = 0


Query: 1   MKKKNKRLLRDVDVLLHNEAETQKKYIKELQQELERMNKVVANFQSALEEQAASSQKIVA 60
           ++KKNKRLLR++   LH E E +K  I     E+E +   +  ++S   E A S  + + 
Sbjct: 54  VRKKNKRLLRNI-ADLHEEMEAKKTAI-----EIEVLQHSIKEYKSQFIE-AKSKNRFLQ 113

Query: 61  EVENLQNSAKEYKSQLTEVVTNDYAQLKKEYQEMSADFAGSLGNTLGVLGGSKFTKIARS 120
           +V N   S      +  EVVT+DYAQL ++YQEM  DF         ++   ++  +   
Sbjct: 114 KVVNSSESQLLICRKAREVVTDDYAQLIEKYQEMLIDF---------MMWKDEYETL--- 173

Query: 121 SPPHHPYWTRRKARIMDDQVNDQVQAVRQDVEELKEQLTKILELITAGRGKNVVEASSQV 180
                    RRK    DD +      V QDVE LK+QLTKILEL+T GRGK+VV  SSQV
Sbjct: 174 ---------RRK---YDDAI------VHQDVEGLKDQLTKILELLTTGRGKSVVGTSSQV 218

Query: 181 EIGLNQTLEVSHLIPTCHTPSQ 203
           E+ LNQ LE  H  P+  TP +
Sbjct: 234 EVDLNQVLEDMHAYPSGFTPQR 218

[Close]

BLAST of ClCG09G013034 vs. ExPASy TrEMBL
Match: A0A5A7SGB8 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00210 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.0e-13
Identity = 74/214 (34.58%), Postives = 92/214 (42.99%), Query Frame = 0


Query: 1   MKKKNKRLLRDVDVLLHNEAETQKKYIKELQQELERMNKVVANFQSALEEQAASSQKIVA 60
           ++KKNKRLLR++   LH E E +K  I +L+ E+ER+N V   FQ+AL EQA SSQ+   
Sbjct: 54  VRKKNKRLLRNI-TNLHEEIEAKKVCITDLKHEVERLNGVALEFQNALHEQATSSQQTAI 113

Query: 61  EVENLQNSAKEYKSQLTEVVTNDYAQLKKEYQEMSADFAGSLGNTLGVLGGSKFTKIARS 120
           E+E                                                         
Sbjct: 114 EIE--------------------------------------------------------- 173

Query: 121 SPPHHPYWTRRKARIMDDQVNDQVQAVRQDVEELKEQLTKILELITAGRGKNVVEASSQV 180
                                  VQAVRQD+E LK+QL KILEL+T GRGK+V E SSQV
Sbjct: 174 -----------------------VQAVRQDIEGLKDQLAKILELLTTGRGKSVAETSSQV 184

Query: 181 EIGLNQTLEVSHLIPTCHTPSQIIVLNPRGDVRT 215
           E+ LNQ LE     P   TP +    NPR   RT
Sbjct: 234 EVDLNQVLENMPAYPPGFTPQR--SSNPRMVDRT 184

The following BLAST results are available for this feature:

BLAST of ClCG09G013034 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059732.1	1.0e-26	57.60	Gag-pro-like protein [Cucumis melo var. makuwa]	[more]
KAA0060308.1	1.0e-23	68.13	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein...	[more]
TYK10943.1	2.2e-21	64.77	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0049672.1	2.3e-15	39.11	uncharacterized protein E6C27_scaffold76G00070 [Cucumis melo var. makuwa]	[more]
KAA0025178.1	8.2e-13	34.58	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]

BLAST of ClCG09G013034 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG09G013034 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UUY2	4.9e-27	57.60	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold551...	[more]
A0A5D3DEF4	5.0e-24	68.13	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein...	[more]
A0A5D3CGB5	1.0e-21	64.77	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7U1L8	1.1e-15	39.11	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7SGB8	4.0e-13	34.58	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of ClCG09G013034 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 20..47
None	No IPR available	COILS	Coil	Coil	coord: 137..164
None	No IPR available	COILS	Coil	Coil	coord: 55..82
None	No IPR available	GENE3D	1.10.287.950		coord: 7..105 e-value: 2.9E-5 score: 25.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G013034.1	ClCG09G013034.1	mRNA