ClCG09G012100 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG09G012100
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	protein LOL1-like
Location	CG_Chr09: 13283809 .. 13287690 (-)
RNA-Seq Expression	ClCG09G012100
Synteny	ClCG09G012100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCAGTTCCTCTTGCACCATATCCAACTCCTCCAACACCTTATACACAACCTGCTAATGGTACTCACTCTCTTCAAAACTTTACTCATTTCTTTACTACATTCTTGTTTGGTTGCTAATCAAATGTTTTAGTTAGCCATTTTCCAACTTTCTCATTGGGAAATCTATTGATTTTTTCATCATCTATTTGAGCTTTGTCACACACTTTACTTTCAATGGACCTGTCAATCCCATTGTTTGAGGTTGCATGTCCATAGCCTTGATTCAAAATTAGGTTTTCTGAGAAATTCTTCAAGAAAGTCTCGAGTTTTCAGAATTAGATTGAACTTTTCTATGTGTTTGCTTTCGTAGATTAGTGATTTGGTACTCAATTGAGGTTTGAAATGTGCATTTTGTTGTTGGTCATTAGCTACACAGAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTTACTGCCGTACCGCCTCCCGGTATATCCGTTCTTCCTCTTTTTTTCCGCCGTCGTCTGGTTGCTACTTTCTACATTAAATGAATTTGACAATTTCTGTTTGGGAATTCTGTTGTTTTTATATAGAAGAAAGATTGGAAATTTTAGTTGCTTTTTGTGTAAAACAGGCACAGAAATGGCACAATTGGTGTGCGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCCACGAGCGTACAATGTTCTTGTTGCCACACTGTTAATTTAGCTTTGGAAGGTATGGAAATCTCAGTAAGTTTACAAAACTCGAATCGAAATTATTCTAGACATCTCGAACAAGTCGGTAAATCTCTTAGGCTGTCTTGAACAATTCATTCCTAGCTAGCTCCCATCACGAATAGCAGCATTATGTTATATATTTATTGATTCACCATTCAGTAAAAGCACATACTCGAATCTGTTCTTCAGATAATAGTTTAGAGCTACAAACCTTGGTTTCTTAAGGCAAAACTCGTTGTGAATTGAGCGACGAATTTATATTATTACAGCAAATCAGGTGGCGCACGTTAGCTGTGGAAACTGCAGGATGCTACTGATGTATCAATATGGAGCACGGTCAGTGAAATGTGCAGTATGCAATTTTGTGACATCAGTTGGGGTAAGTATAATACTTCCATTTTGTTGAATTAATGCTAGTTCCATCAGTTGCTCTCTTTTTCAATATGAACACGGGTTTGGAATAAAACCATTCGGTCTAAATCGTTGGGTTGTTTAGGAATTTGGCATCATCAGAAAGCTCAGAACATCAAACAGAGCTCTGATAGTACTCAACTCTTAAATCTATGTTCTTAAAATTTTTCTTACTTGAATGTGAAGAGAAGACATACATTTTAGTATCTCACACTATTAATATCTTTCATTGTAGATGTCAACTAGCGTGATCGATCAAAAAGCTTAATAGCTAAAGTTATCATAAACATGGTTGTCCCAAATTCGACAACTGCGGGTTCGTCCAATATTCGTAATGCCCTCCAGGGTGTTTGTCCGACTCGACAAACGGAGGTTCCTCTTCATATTCACTTGTATAGAGCTGTATTTCTGTGCGTGAACTTTAAATGCTGCTTTTCTTCAGTCTTCATAGTGCTTGAATGTATGATTTAAGTAGTTTTGAGAAAAAAATATATATGGTATGAGAGACAACTTTTTATACTGTGCTGAGTGTAATATAACTGTTAGATAAAGATAGATTTTGGCTTTTTTTTCCCTTTTTTGCCCTCTCTTTGTGAACTGCACAAAAAGGTTTCTATCAGGTATCAGCCTTTTGAAATGTCAACCTACTTGCTTCATTATCACTACATAATGCTTTGCAGTCAATTCTGATTCTAAATGACATGATCCATGTGAGTGATGTTCAATTGGGACCAAGAGAGAGAAAGATAGATAGAGAATATGACTAAGCTACAACCTTTGCATTTAAAAAAGATCCATTCTTTAACTCTGAGAATAATACTCATTTAAGTTCTAATCTACCCCATATTGCTCTTAGGGGCGTTTCAGGAGTTGAGTTGAGGTTTAAAGTTTGGAGTTATTATATTGGAGTTAGGAAGTATGTGTTTGAGATGTAAAGTTGTGAATATGAAGTTCTTCGATAAATGTGCAAACTTTAATAGTGAATACTATTGAAGTTGGTGGAGTTGAATTATTTAACACCAACTTATGAAGTCGGTGGGCCAAACACCCCCTTAAAGTTATTTTATAGTCTTTGGAAAGAATCTAGACTAATTCCTACTATATGGATCCAATATTGTAACTTCTACATTAAAACCGACACGATAGCCTTTGTAAATATATTTTTCTGGATAAGAAACCGAAGTTTTATCAAAAAAGTTAGTGAGGAAGCGCATATCTAACTGAAAAAAGAACTCAACTCGAACCAAATCTCATCAATATCATAGTTATGAAAGAGGCTATTGACCGATCCTCACAAGGAGGCATTAAACTTAACCCCCTCCTAGAGATCCTTACTCAGTCTCTCCACCTCTCTAAAAACCATGTTATTCCTCTCAATTCAGATAGACTTTGTAAGTTGAAAATCATAGGATAAAAAACGTTAAGGACCAACAAAATGGTAAGTTACACAGGCGGTCTCGTGACGGGTTGAGTAAGCTTAGAGAGCTATGAGTATAGAAATGAAAACATCCAAAGGTTATAACACAATGATCATTATCTCTCTGCTCAATCACATGGAGAAAGTTATTATGTCATCAGATGAATTGGCCCCCTGTGCTGTGATTGTCCAATGTTTTGCCTTCAAATTTTAAGCAAATCAGTACTTGTTGATACTCCAACCAAACTGTTTATACCCCACAAATTATCCCAATATCTATCTTTTAAAAGGTCCATTTAGTCATTTTAATCTATTTTCCTAGAATTTAGGAGACTTTTTTCATCCTAATACAAATTTATGGCTATATTATAAGAATTCTAGTGAGTAAAGTATCATGCTAAAAATTTAATCAAAAGAAATGAGATAAAAATGAAAGTGAAGGGATGAAAATGATCACTTTTTTAAAAAATTACATGGATCAAAATTGGTATTTTTTAGTTTAGAACTAGAAAGAACAAAAGTTGAAAGTATAAGATCGAAAACAGACGTTATAAAAGCAAAGTGAACCGGTCCAAAAACCAAAATCATATTTAAATCTTTCATTCAAATTTGTCACAATGTCTATAATGTCTCAGGTTTGTCATCCAATGAATTTATAGATACTGAAGCCTGTTTCCAAATTCTTGATTCTCTCAGTTAAATTATGGTCCTTATCTGGGGGGAGGGGGTCCTGTCCTAGCTCTCCATTTAATTGTACCTAGCCTCATTGACTTCAAACAAAACAATGATCAAGATCCTGTAAAACCTTCAAGCATAATCCATTCTAGTAGATGCAGATTTGCTAGATCGTCCTGCATTGGATACGGATAAGAAGCTCTTCTTTCCTTCTTTCTGTTGAAATGCTTTCCCTTGGCTTCAAACCACGTCATGTCTTTCAATCTCAAACTGAGACAATATCTCTAAACAAAAAGCTTTGAAGACCCGACATTTTTTCGATAATTGATCTTTCCCTCAAAATAGATGGTTTGATACGTTGATGTATAACAATAGACTGCGATTAAAACGGAACAGTATGCGACGAGTCATCATCGTTCGCATACAAAAGATCATAATCATGCATGTGAAGGGGCTTACAGTGGAGACAAAACAAGGTTAGGTTGCAATAGCCACCACAAATTTGAAGGTCTAGCATTAGAACCAGTGGGGGGAAGAAGTGGGGGACCTGAATTATTGAACAGCAAAGAGTTAGTTGAAATGGGAATCTGA

mRNA sequence

ATGCCACCAGTTCCTCTTGCACCATATCCAACTCCTCCAACACCTTATACACAACCTGCTAATGCTACACAGAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTTACTGCCGTACCGCCTCCCGGCACAGAAATGGCACAATTGGTGTGCGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCCACGAGCGTACAATGTTCTTGTTGCCACACTGTTAATTTAGCTTTGGAAGCAAATCAGGTGGCGCACGTTAGCTGTGGAAACTGCAGGATGCTACTGATGTATCAATATGGAGCACGGTCAGTGAAATGTGCAGTATGCAATTTTGTGACATCAGTTGGGACTGCGATTAAAACGGAACAGTATGCGACGAGTCATCATCGTTCGCATACAAAAGATCATAATCATGCATGTGAAGGGGCTTACAGTGGAGACAAAACAAGGTTAGGTTGCAATAGCCACCACAAATTTGAAGGTCTAGCATTAGAACCAGTGGGGGGAAGAAGTGGGGGACCTGAATTATTGAACAGCAAAGAGTTAGTTGAAATGGGAATCTGA

Coding sequence (CDS)

ATGCCACCAGTTCCTCTTGCACCATATCCAACTCCTCCAACACCTTATACACAACCTGCTAATGCTACACAGAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTTACTGCCGTACCGCCTCCCGGCACAGAAATGGCACAATTGGTGTGCGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCCACGAGCGTACAATGTTCTTGTTGCCACACTGTTAATTTAGCTTTGGAAGCAAATCAGGTGGCGCACGTTAGCTGTGGAAACTGCAGGATGCTACTGATGTATCAATATGGAGCACGGTCAGTGAAATGTGCAGTATGCAATTTTGTGACATCAGTTGGGACTGCGATTAAAACGGAACAGTATGCGACGAGTCATCATCGTTCGCATACAAAAGATCATAATCATGCATGTGAAGGGGCTTACAGTGGAGACAAAACAAGGTTAGGTTGCAATAGCCACCACAAATTTGAAGGTCTAGCATTAGAACCAGTGGGGGGAAGAAGTGGGGGACCTGAATTATTGAACAGCAAAGAGTTAGTTGAAATGGGAATCTGA

Protein sequence

MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGTAIKTEQYATSHHRSHTKDHNHACEGAYSGDKTRLGCNSHHKFEGLALEPVGGRSGGPELLNSKELVEMGI

Homology

[Close]

BLAST of ClCG09G012100 vs. NCBI nr
Match: XP_038887483.1 (protein LOL1 isoform X2 [Benincasa hispida])

HSP 1 Score: 275.8 bits (704), Expect = 3.0e-70
Identity = 134/139 (96.40%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVT VPPPG
Sbjct: 1   MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGTAIKT 140
           SVKCAVCNFVTSVG +  T
Sbjct: 121 SVKCAVCNFVTSVGMSTST 139

[Close]

BLAST of ClCG09G012100 vs. NCBI nr
Match: XP_038887481.1 (protein LOL1 isoform X1 [Benincasa hispida] >XP_038887482.1 protein LOL1 isoform X1 [Benincasa hispida])

HSP 1 Score: 274.6 bits (701), Expect = 6.8e-70
Identity = 134/145 (92.41%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVT VPPPG
Sbjct: 1   MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGTAIKTEQYATS 146
           SVKCAVCNFVTSVG  +     + S
Sbjct: 121 SVKCAVCNFVTSVGVDVNEHDRSKS 145

[Close]

BLAST of ClCG09G012100 vs. NCBI nr
Match: XP_004148490.1 (protein LOL1 [Cucumis sativus] >XP_011652655.1 protein LOL1 [Cucumis sativus] >XP_011652656.1 protein LOL1 [Cucumis sativus] >XP_011652657.1 protein LOL1 [Cucumis sativus] >XP_031737667.1 protein LOL1 [Cucumis sativus] >XP_031737668.1 protein LOL1 [Cucumis sativus] >KGN60405.1 hypothetical protein Csa_001040 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 2.6e-69
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPP PYTQP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVG 135
           SVKCAVCNFVTSVG
Sbjct: 121 SVKCAVCNFVTSVG 134

[Close]

BLAST of ClCG09G012100 vs. NCBI nr
Match: XP_022952054.1 (protein LOL1-like [Cucurbita moschata] >XP_022952055.1 protein LOL1-like [Cucurbita moschata] >XP_023553673.1 protein LOL1-like [Cucurbita pepo subsp. pepo] >KAG6571844.1 Protein LOL1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 271.9 bits (694), Expect = 4.4e-69
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPP PY+QPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVG 135
           SVKCAVCNFVTS+G
Sbjct: 121 SVKCAVCNFVTSIG 134

[Close]

BLAST of ClCG09G012100 vs. NCBI nr
Match: XP_008465951.1 (PREDICTED: protein LOL1 [Cucumis melo] >XP_008465952.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_008465953.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_008465954.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_016903577.1 PREDICTED: protein LOL1 [Cucumis melo])

HSP 1 Score: 269.6 bits (688), Expect = 2.2e-68
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPP PYTQP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVG 135
           SVKCAVCNFVTSVG
Sbjct: 121 SVKCAVCNFVTSVG 134

[Close]

BLAST of ClCG09G012100 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.1e-65
Identity = 122/143 (85.31%), Postives = 130/143 (90.91%), Query Frame = 0


Query: 3   PVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 62
           PVPLAPYPTPP P+T P N  QSQLVCSGCRNLL+YP GATSVCCAVC+ VTAVP PGTE
Sbjct: 43  PVPLAPYPTPPVPFT-PPNGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTE 102

Query: 63  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSV 122
           MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARSV
Sbjct: 103 MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSV 162

Query: 123 KCAVCNFVTSVGTAIKTEQYATS 146
           KCAVCNFVTSVG +  T+Q  +S
Sbjct: 163 KCAVCNFVTSVGASPGTDQKPSS 184

[Close]

BLAST of ClCG09G012100 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.6e-64
Identity = 125/146 (85.62%), Postives = 129/146 (88.36%), Query Frame = 0


Query: 3   PVPLAPYPTPPTP------YTQPANAT---QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPP P       T PAN +   QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSVGTAIKT 140
           MYQYGARSVKCAVCNFVTSVG +  T
Sbjct: 122 MYQYGARSVKCAVCNFVTSVGGSTST 147

[Close]

BLAST of ClCG09G012100 vs. ExPASy Swiss-Prot
Match: Q2QMB3 (Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.2e-38
Identity = 72/112 (64.29%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTA-VPPPGTEMAQLVCGGCHTLLMYIRGAT 83
           QSQ+VC GCRN+LLYP GA SVCCAVC+AV++  P PG ++A L+CGGC TLLMY R AT
Sbjct: 2   QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61

Query: 84  SVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG 135
           SV+CSCC TVNL    + +AH++CG C+ +LMY YGA SVKCA+CNF+T+ G
Sbjct: 62  SVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTG 113

[Close]

BLAST of ClCG09G012100 vs. ExPASy Swiss-Prot
Match: Q6ASS2 (Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.2e-37
Identity = 72/113 (63.72%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG--TEMAQLVCGGCHTLLMYIRGA 83
           QSQ+VC GCR++L YP GA SVCCA+C A+T VPPP    EMA L+CGGC TLLMY R A
Sbjct: 2   QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61

Query: 84  TSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG 135
            +V+CSCC TVNL    N +AHVSCG CR  LMY YGA SVKCA+C+++T+ G
Sbjct: 62  DTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTG 114

[Close]

BLAST of ClCG09G012100 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.2e-34
Identity = 72/121 (59.50%), Postives = 88/121 (72.73%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 134
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

[Close]

BLAST of ClCG09G012100 vs. ExPASy TrEMBL
Match: A0A0A0LEE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902960 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.2e-69
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPP PYTQP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVG 135
           SVKCAVCNFVTSVG
Sbjct: 121 SVKCAVCNFVTSVG 134

[Close]

BLAST of ClCG09G012100 vs. ExPASy TrEMBL
Match: A0A6J1GKN9 (protein LOL1-like OS=Cucurbita moschata OX=3662 GN=LOC111454822 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.1e-69
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPP PY+QPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVG 135
           SVKCAVCNFVTS+G
Sbjct: 121 SVKCAVCNFVTSIG 134

[Close]

BLAST of ClCG09G012100 vs. ExPASy TrEMBL
Match: A0A1S3CQ35 (protein LOL1 OS=Cucumis melo OX=3656 GN=LOC103503523 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.1e-68
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPP PYTQP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVG 135
           SVKCAVCNFVTSVG
Sbjct: 121 SVKCAVCNFVTSVG 134

[Close]

BLAST of ClCG09G012100 vs. ExPASy TrEMBL
Match: A0A6J1ET02 (protein LOL1 OS=Cucurbita moschata OX=3662 GN=LOC111437302 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.0e-68
Identity = 130/134 (97.01%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPP PYT PAN  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVG 135
           SVKCAVCNFVTSVG
Sbjct: 121 SVKCAVCNFVTSVG 134

[Close]

BLAST of ClCG09G012100 vs. ExPASy TrEMBL
Match: A0A6J1I7B6 (protein LOL1-like OS=Cucurbita maxima OX=3661 GN=LOC111470654 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 5.2e-68
Identity = 131/135 (97.04%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPT-PYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60
           MPPVPLAPYPTPP  PY+QPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP
Sbjct: 1   MPPVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60

Query: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120
           GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
Sbjct: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120

Query: 121 RSVKCAVCNFVTSVG 135
           RSVKCAVCNFVTS+G
Sbjct: 121 RSVKCAVCNFVTSIG 135

[Close]

BLAST of ClCG09G012100 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 246.5 bits (628), Expect = 1.8e-65
Identity = 125/146 (85.62%), Postives = 129/146 (88.36%), Query Frame = 0


Query: 3   PVPLAPYPTPPTP------YTQPANAT---QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPP P       T PAN +   QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSVGTAIKT 140
           MYQYGARSVKCAVCNFVTSVG +  T
Sbjct: 122 MYQYGARSVKCAVCNFVTSVGGSTST 147

[Close]

BLAST of ClCG09G012100 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 246.5 bits (628), Expect = 1.8e-65
Identity = 125/146 (85.62%), Postives = 129/146 (88.36%), Query Frame = 0


Query: 3   PVPLAPYPTPPTP------YTQPANAT---QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPP P       T PAN +   QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSVGTAIKT 140
           MYQYGARSVKCAVCNFVTSVG +  T
Sbjct: 122 MYQYGARSVKCAVCNFVTSVGGSTST 147

[Close]

BLAST of ClCG09G012100 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 228.4 bits (581), Expect = 5.2e-60
Identity = 109/116 (93.97%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 83
           QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS
Sbjct: 65  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 124

Query: 84  VQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGTAIKT 140
           VQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTSVG +  T
Sbjct: 125 VQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGSTST 180

[Close]

BLAST of ClCG09G012100 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 145.6 bits (366), Expect = 4.4e-35
Identity = 72/121 (59.50%), Postives = 88/121 (72.73%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 134
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

[Close]

BLAST of ClCG09G012100 vs. TAIR 10
Match: AT4G20380.1 (LSD1 zinc finger family protein )

HSP 1 Score: 145.6 bits (366), Expect = 4.4e-35
Identity = 72/121 (59.50%), Postives = 88/121 (72.73%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 134
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 62  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 121

The following BLAST results are available for this feature:

BLAST of ClCG09G012100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887483.1	3.0e-70	96.40	protein LOL1 isoform X2 [Benincasa hispida]	[more]
XP_038887481.1	6.8e-70	92.41	protein LOL1 isoform X1 [Benincasa hispida] >XP_038887482.1 protein LOL1 isoform...	[more]
XP_004148490.1	2.6e-69	98.51	protein LOL1 [Cucumis sativus] >XP_011652655.1 protein LOL1 [Cucumis sativus] >X...	[more]
XP_022952054.1	4.4e-69	97.76	protein LOL1-like [Cucurbita moschata] >XP_022952055.1 protein LOL1-like [Cucurb...	[more]
XP_008465951.1	2.2e-68	97.76	PREDICTED: protein LOL1 [Cucumis melo] >XP_008465952.1 PREDICTED: protein LOL1 [...	[more]

BLAST of ClCG09G012100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0J7V9	3.1e-65	85.31	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
Q93ZB1	2.6e-64	85.62	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q2QMB3	3.2e-38	64.29	Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1	[more]
Q6ASS2	1.2e-37	63.72	Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1	[more]
P94077	6.2e-34	59.50	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of ClCG09G012100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEE4	1.2e-69	98.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902960 PE=4 SV=1	[more]
A0A6J1GKN9	2.1e-69	97.76	protein LOL1-like OS=Cucurbita moschata OX=3662 GN=LOC111454822 PE=4 SV=1	[more]
A0A1S3CQ35	1.1e-68	97.76	protein LOL1 OS=Cucumis melo OX=3656 GN=LOC103503523 PE=4 SV=1	[more]
A0A6J1ET02	4.0e-68	97.01	protein LOL1 OS=Cucurbita moschata OX=3662 GN=LOC111437302 PE=4 SV=1	[more]
A0A6J1I7B6	5.2e-68	97.04	protein LOL1-like OS=Cucurbita maxima OX=3661 GN=LOC111470654 PE=4 SV=1	[more]

BLAST of ClCG09G012100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32540.2	1.8e-65	85.62	lsd one like 1	[more]
AT1G32540.3	1.8e-65	85.62	lsd one like 1	[more]
AT1G32540.1	5.2e-60	93.97	lsd one like 1	[more]
AT4G20380.2	4.4e-35	59.50	LSD1 zinc finger family protein	[more]
AT4G20380.1	4.4e-35	59.50	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 29..53 e-value: 1.5E-10 score: 40.7 coord: 68..92 e-value: 2.5E-12 score: 46.4 coord: 106..130 e-value: 1.4E-12 score: 47.2
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 26..56 e-value: 1.7E-12 score: 44.7 coord: 65..94 e-value: 1.5E-14 score: 51.3 coord: 103..133 e-value: 3.2E-11 score: 40.7
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 3..142
None	No IPR available	PANTHER	PTHR31747:SF1	PROTEIN LOL1	coord: 3..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G012100.2	ClCG09G012100.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus