ClCG09G003940 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG09G003940
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Pentatricopeptide repeat-containing protein
Location	CG_Chr09: 3534824 .. 3539531 (-)
RNA-Seq Expression	ClCG09G003940
Synteny	ClCG09G003940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCTTACCTTCACTCTCGCCATGCCCGAATCTTCCCCTGCTCCTCAACTTCCTTAACCTCCACAGTCGCTTCAATGGCTTCCATAAGCCCCACTCCTTCTTTCATCTCTTCTACCCACTCACGATCACTTAAGCGGCGTTCTGGCCAGTCCTCCCACGCCCTACAGAGAGATCCGAAGAAGGGTCTGTCTCGGATTCTGAGGAAAGACGCTGCTATTAAAGCTATAGAGAGGAAAGCCAACTCCAAGAAGTACAATAATCTTTGGCCCAAAGCTGTTTTGGAGGCTCTCGATGAAGCTATTCATGAGAATCTCTGGGAAACTGCTCTTAAGGTTGGTTTATCTTATTGAATTTGCACAAAATAAGGGGATATGGATATTGTTAGGGAGAAAATCCAACTATAGGAATTCAAGTAAAGGATATTGACCTCTTACTTTGATGCCATATTAAATTAGCAATCAATCCAGAAGTTTAAGTTTAGTCGATACTTTGATAATCCCAACACGAATGTCCAATAAATTCCATTTTAGTTGTGGCTAAAATGAACGCTTTCCACTCTGCTATTGAGGAATGACCACTCATCGAACTCCAACTTCGTTTCTAGATGTTTGGGAGTGATTTTAACTGTAAAAATAATTTTTTTTTCATTTTTTAAAATCACTGAAAAAAATGGTTTTAATAATTCAAAATTAGTTATAATAGTATGAATAATGCATTCAGACGGGTACAATTAAAAGTGAAATTGATTTTGAATGATTAAAGATGTGTTTGATAGTGTTTTGAAAAAAGTGATTTTAGCAATTTTCTATTAGAAAACTTGCACTTCTATGAGAATCCTAAGTGTGGTCAGTATACTTGCAGAATCCTTTAGCACTGGACGTTGTGCAAAGCTCTAGTTTTAGCAATTTCAACATGACGGCCAAAGCTTCTTCTAGCTGAAGTTTCTCTCATGAACAAATTAAGGCTATCAAACCCTTATATATCTGAGATGATATGTCACGGTAGGGTGTTGTCCCCAAGAAAGATCCTCTACAATTGTTTTGGGATATTGGGAGGAAATTTGAGAGTTTGCTAGGTAGTAGGTTTTATGCGTCCTTTCATTCTTTTTTGTAGATATGAACTTGATTTGATCCTCTAAGATTTAACTCTGTTTCTTTAGATAGTGTTTGGACTCACTTTTTGTTGGGACCTTGTACATTCTTTCATTTTTCTTAATGAAAGGTCGGTTTCTTACCATAAAAATCTGTTTGAGAAGGGGAGTATTTCTATATCTGATATTTCCCATTCCTAGACTGCTTCAGTGTGATGTTTGCTTTATTTCTGTTGTTCAGAACTCTTGCACCCTGTCTTGTTAGTGATCTTTTAAACCCATATAAGACAATTCTCGCAAAGGACCATCTGAAGAGCTTCTTATTCAAGGGGGTTGTCACGAAATCTTTCAAGGTATCAGCTAACCAAACAACCGACAATTCCAAGTTAGCTCAAATAGGCTTCAGAAATTCCTTTCCTTTATTTTCTGAAGTCAATTTTAAAAATTAAAAAAAAAAAAAAAAAAAATCCTGATACAGCATTTCCAGATTGAAAATGAAGAAACTTTTGACTATTGAACTGATTTTACCCTTGTATTTTGACAATGAGAGTTATGACCAAATAATTTGGTATCTCTTCAGATTTTTGGATTACTTCGCCAGCAACAATGGTATGAACCAAGATGCCAAACATACACAAAATTGTTGATGCTTCTGGGTAAGTGCAGGCAACCCGAGCAAGCAAGCTTGCTGTTTCAGATTATGTTTTCTGAGGGATTGAAACCCTCTATTGATGTTTACACTGCTCTTGTTAGTGCTTATGGTCAAAGTGGCCTCCTTGACAAGGCCATTTCAACAGTTGATGAAATGAAATCAGTTTCGGACTGCAAGCCAGATGTACATACATATTCAATTCTCATTGATTGTTGCACAAGACTCCGTCGTTTTGATCTTCTGAAGGACATACTTGCTGATATGTCCTATTTGGGGATCACATCTAATACAGTCACTTACAATACTATTATTAATGGATTTGGAAAGGCTAAAATGTTTCAGCAAATGGAAAGCTTGTTACTTGAAATGATTGAAAGTGATAACTGCCCTCCAGATTTGATTACATTCAATACTTTTATCAGAGCTTACGGAAATAGTGAGCAGATTGAGAAGATGGAGAAGTGGTATCAGGAATTTCAGCTGATGGGAATTGAACCAGACATTTGGACATACAATTCTATGATCAGCTCATATGGGAAAGCTGGAATGTACGGCAAGATGGTGTCTGTTTTGAATTTCATGGAAAAACGCTTTTTCTCTCCAACAATTGTTACTATGAATACAATCATTGATGTGTTTGGAAGAGCTGGAAATATTGAGGAGATGGAAGAATACTTCAAAAAAATGAAATTTCAGGGAATGAAGCCCAACTCTGTGACTTACTGTTCCCTTGTTAATGCTTATGGTAAATCTGGTGATATTGAGAAAGTTGATTTGATATTGAGGCAAATTGAAAATTCTGATGTGGTACTGGATACCCCTCTTTTTAACTGCCTAATCAATGTGTATGGCCAGGCTGGTGATGTGAGAAAGATGGGAGAGTTGTTCTTGGAAATGAAAGAGAATAAATGTGTGCCTGATGGCATTACATATGCTACAATGATTCGTGCCCTAAAAGCTCAAGGCATGACCGAGGCTGCTCAAAGATTGGAGAATAAGTTGATTGCCACTAGAGACAACGAGGTAAATTGGTGCTTATTTACGATTCTGCATAACAGTTGATTATGATAATGTTGTCATATTAGCAACTTTGTTTGGCATGCAAGACATTACTATCTCTTCCAAGAGGTTGTAGGTACGAATCTCCTCACCACACATGTGATATGATATTCTAAAAAATAGCTATGTTATGTAACTCATTTTTCTATCCTATATATGCTTCTGTGGAAACATCACGTTTGGCTGACATATGAACATCTCGTGCTTTCTAGTGCTTTTTCCTTCCAGCTGATCTTATTTTGTTCTCATGTACTGAAACTTGTCCCTTTTACAGTGAAACCTGGCTTGGCAAGAAAACAGTACCACTTCCCTAGTGTGGAAGATCCACAATGCTGCCTCTGGGTGCATGTTTTTTTTCAAGGATCACTGCTTAGTTAGAGCAGGCCATTCTTCTCAATTCTTCAGGTAGACTTCATTAATTTGTCACACTACGAATTTAAACTGAAGAATTCCATCTTGTTTCTTTTGTTATTACTTGCTTGTTTTATGAAGAATAATTTTCCTGCTAGAGAACACTTTTTAGAACTCCAAAGGTTTGTGCTTATTCAGGCTCATTGTAGATCGCATTTCTTTCAAAAATTATGTCTCGTGATGGGGCAGTGAATATCTTTCAGTACAAGTAAAGTTTCTTGGTGGTCTTGATTCTGAATGATCCTTATGTTAACGTGTAAGCGCTTCTTTCCTCGTTCTCTATCTAGTTGATTGCAAAGAATTTCTCAAAATAGAGTATAATTAACACCCTCCCAGCAGTTTACCACTTATTTCAATTTCTTTCATGAAAATGCAGAATGATATTGGTTCAGGGACAGGTTTAGTTGATCTAGTTGTGACCATCAGCTCTAAGTTAGGAACTTAGGAATGCAATTATCGATATTATAAGGGTATATTAGTAATTAGTTAGGAAAGTAGTTAGGGAGATTAGTTATAAATTGAAAGAGTAGGAAGGGATGAAGTTAGGCACTTGGTGAGTGAATTGGGTTTGGATATTTAACACTGCCGATTTCCAAATCTAAATTCAACAAAATTTCGTTTCAATTTGCATTTGTCACATGGTATATGCATCTACTTTTACGCTTCCACTCACGATTACATTGCTAATTCTTGTATGATATTATTGTATTTGACAGAGAAAAATGTGCTCTTGACCATTGTCCCCAACCCCCCCATAAGCCTAATGGGACTACTGTTCCTTCTCAAGGCAACCTACCCTTGGCAACAAACCTTCCTCTATGGTCTTTTCACAGCTATCTGAATATCAAAATGATTTGTGCTAGAAGAACTCTAGCTCCCTAGCATATTGCTTGCAATGGCTGGAATTGGACTACAGCTCGACTCGAGATGCTTGTCATACTTTTATACCGTGGCCCATGGCGCTATCATAATCTTCTTGTATCTTTCACTGTGACTGTTATACTGTAGCCCATTGCCCTGTTGCATAATCTTCTGGTATCTTTGAATGTGATCCTAGTTGTGCTCATCTAAAAATTGTCCATAGACATCCTTGCAACTACATTCCTACTTTACAGCTGCCTATATAAGATGGAGAGATCTCATCTAGGTTCTGACTTCTGAGGGAAATCTAGGATTTGTTAATATTCTCCCTAAATGAAAGAATCCATTGTTTGCTTTTGTCAGCTTTCAAATACCAGACTAATGGCTTATTTTACATGTTAGTTGCATTTTGTCTTCTAATTAAATACATGACTTGATAAGATTCTTTGTAGAAAGGAGATGGAGAATGCATATCTTCTAACCCCAATACTTCCGAAGATGCGGCATAAAATTTGCTTCCTCAAAGCTTGATCCTCTCGTTTGAACTTGTTTCGGTTTGTTAACTAGAATGGGAAGTGATCAAGGACTATCTTTTCTCATGTAGTCTAAGATGCACATATTTTCAACATTG

mRNA sequence

ATGGAGCCTTACCTTCACTCTCGCCATGCCCGAATCTTCCCCTGCTCCTCAACTTCCTTAACCTCCACAGTCGCTTCAATGGCTTCCATAAGCCCCACTCCTTCTTTCATCTCTTCTACCCACTCACGATCACTTAAGCGGCGTTCTGGCCAGTCCTCCCACGCCCTACAGAGAGATCCGAAGAAGGGTCTGTCTCGGATTCTGAGGAAAGACGCTGCTATTAAAGCTATAGAGAGGAAAGCCAACTCCAAGAAGTACAATAATCTTTGGCCCAAAGCTGTTTTGGAGGCTCTCGATGAAGCTATTCATGAGAATCTCTGGGAAACTGCTCTTAAGAATCCTTTAGCACTGGACGTTGTGCAAAGCTCTAGTTTTAGCAATTTCAACATGACGGCCAAAGCTTCTTCTAGCTGAAGTTTCTCTCATGAACAAATTAAGGCTATCAAACCCTTATATATCTGAGATGATATGTCACGAACTCTTGCACCCTGTCTTGTTAGTGATCTTTTAAACCCATATAAGACAATTCTCGCAAAGGACCATCTGAAGAGCTTCTTATTCAAGGGGGTTGTCACGAAATCTTTCAAGATTTTTGGATTACTTCGCCAGCAACAATGGTATGAACCAAGATGCCAAACATACACAAAATTGTTGATGCTTCTGGTGCTTATGGTCAAAGTGGCCTCCTTGACAAGGCCATTTCAACAGTTGATGAAATGAAATCAGTTTCGGACTGCAAGCCAGATGTACATACATATTCAATTCTCATTGATTGTTGCACAAGACTCCGTCGTTTTGATCTTCTGAAGGACATACTTGCTGATATGTCCTATTTGGGGATCACATCTAATACAGTCACTTACAATACTATTATTAATGGATTTGGAAAGGCTAAAATGTTTCAGCAAATGGAAAGCTTGTTACTTGAAATGATTGAAAGTGATAACTGCCCTCCAGATTTGATTACATTCAATACTTTTATCAGAGCTTACGGAAATAGTGAGCAGATTGAGAAGATGGAGAAGTGGTATCAGGAATTTCAGCTGATGGGAATTGAACCAGACATTTGGACATACAATTCTATGATCAGCTCATATGGGAAAGCTGGAATGTACGGCAAGATGGTGTCTGTTTTGAATTTCATGGAAAAACGCTTTTTCTCTCCAACAATTGTTACTATGAATACAATCATTGATGTGTTTGGAAGAGCTGGAAATATTGAGGAGATGGAAGAATACTTCAAAAAAATGAAATTTCAGGGAATGAAGCCCAACTCTGTGACTTACTGTTCCCTTGTTAATGCTTATGGTAAATCTGGTGATATTGAGAAAGTTGATTTGATATTGAGGCAAATTGAAAATTCTGATGTGGTACTGGATACCCCTCTTTTTAACTGCCTAATCAATGTGTATGGCCAGGCTGGTGATGTGAGAAAGATGGGAGAGTTGTTCTTGGAAATGAAAGAGAATAAATGTGTGCCTGATGGCATTACATATGCTACAATGATTCGTGCCCTAAAAGCTCAAGGCATGACCGAGGCTGCTCAAAGATTGGAGAATAAGTTGATTGCCACTAGAGACAACGAGTGAAACCTGGCTTGGCAAGAAAACAGTACCACTTCCCTAGTGTGGAAGATCCACAATGCTGCCTCTGGGTGCATGTTTTTTTTCAAGGATCACTGCTTAGTTAGAGCAGGCCATTCTTCTCAATTCTTCAGGCTCATTGTAGATCGCATTTCTTTCAAAAATTATGTCTCGTGATGGGGCAGTGAATATCTTTCAGTACAAGTAAAGTTTCTTGGTGGTCTTGATTCTGAATGATCCTTATGTTAACGTAGAAAAATGTGCTCTTGACCATTGTCCCCAACCCCCCCATAAGCCTAATGGGACTACTGTTCCTTCTCAAGGCAACCTACCCTTGGCAACAAACCTTCCTCTATGGTCTTTTCACAGCTATCTGAATATCAAAATGATTTGTGCTAGAAGAACTCTAGCTCCCTAGCATATTGCTTGCAATGGCTGGAATTGGACTACAGCTCGACTCGAGATGCTTGTCATACTTTTATACCGTGGCCCATGGCGCTATCATAATCTTCTTGTATCTTTCACTGTGACTGTTATACTGTAGCCCATTGCCCTGTTGCATAATCTTCTGGTATCTTTGAATGTGATCCTAGTTGTGCTCATCTAAAAATTGTCCATAGACATCCTTGCAACTACATTCCTACTTTACAGCTGCCTATATAAGATGGAGAGATCTCATCTAGGTTCTGACTTCTGAGGGAAATCTAGGATTTGTTAATATTCTCCCTAAATGAAAGAATCCATTGTTTGCTTTTGTCAGCTTTCAAATACCAGACTAATGGCTTATTTTACATGTTAGTTGCATTTTGTCTTCTAATTAAATACATGACTTGATAAGATTCTTTGTAGAAAGGAGATGGAGAATGCATATCTTCTAACCCCAATACTTCCGAAGATGCGGCATAAAATTTGCTTCCTCAAAGCTTGATCCTCTCGTTTGAACTTGTTTCGGTTTGTTAACTAGAATGGGAAGTGATCAAGGACTATCTTTTCTCATGTAGTCTAAGATGCACATATTTTCAACATTG

Coding sequence (CDS)

ATGGAGCCTTACCTTCACTCTCGCCATGCCCGAATCTTCCCCTGCTCCTCAACTTCCTTAACCTCCACAGTCGCTTCAATGGCTTCCATAAGCCCCACTCCTTCTTTCATCTCTTCTACCCACTCACGATCACTTAAGCGGCGTTCTGGCCAGTCCTCCCACGCCCTACAGAGAGATCCGAAGAAGGGTCTGTCTCGGATTCTGAGGAAAGACGCTGCTATTAAAGCTATAGAGAGGAAAGCCAACTCCAAGAAGTACAATAATCTTTGGCCCAAAGCTGTTTTGGAGGCTCTCGATGAAGCTATTCATGAGAATCTCTGGGAAACTGCTCTTAAGAATCCTTTAGCACTGGACGTTGTGCAAAGCTCTAGTTTTAGCAATTTCAACATGACGGCCAAAGCTTCTTCTAGCTGA

Protein sequence

MEPYLHSRHARIFPCSSTSLTSTVASMASISPTPSFISSTHSRSLKRRSGQSSHALQRDPKKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAIHENLWETALKNPLALDVVQSSSFSNFNMTAKASSS

Homology

[Close]

BLAST of ClCG09G003940 vs. NCBI nr
Match: TYK10406.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 9.8e-49
Identity = 113/137 (82.48%), Postives = 119/137 (86.86%), Query Frame = 0


Query: 1   MEPYLHSRHARIFPCSSTSLTSTVASMASISPTPSFISSTHSRSLKRRSGQSSHALQRDP 60
           ME YLHS  A IF C STS TSTV SM S+S TP FISS+HSRSLKR S QSS ALQRDP
Sbjct: 1   MELYLHSPDATIFRCFSTSFTSTVISMTSMSSTPYFISSSHSRSLKRSSTQSSDALQRDP 60

Query: 61  KKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAIHENLWETALKNPLALDVV 120
           KKGLSRILRKDAAIKAIE+KANSKKYNNLWPKAVLEALDEAI ENLWETALKNP A +V+
Sbjct: 61  KKGLSRILRKDAAIKAIEKKANSKKYNNLWPKAVLEALDEAIQENLWETALKNPFAPEVL 120

Query: 121 QSSSFSNFNMTAKASSS 138
           QSSSFSNFNMTA ASS+
Sbjct: 121 QSSSFSNFNMTANASSA 137

[Close]

BLAST of ClCG09G003940 vs. NCBI nr
Match: XP_038898945.1 (pentatricopeptide repeat-containing protein At3g53170 isoform X3 [Benincasa hispida])

HSP 1 Score: 185.7 bits (470), Expect = 2.8e-43
Identity = 102/113 (90.27%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MEPYLHSRHARIFPCSSTSLTSTVASMASI-SPTPSFISSTHSRSLKRRSGQSSHALQRD 60
           MEPYLHS++A IFPCS TSLTSTV SMASI S TPSFISS+HSRSLKR SGQSS ALQRD
Sbjct: 1   MEPYLHSQNAPIFPCSPTSLTSTVISMASIRSSTPSFISSSHSRSLKRSSGQSSDALQRD 60

Query: 61  PKKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAIHENLWETALK 113
           PKKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAI ENLWETALK
Sbjct: 61  PKKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAIQENLWETALK 113

[Close]

BLAST of ClCG09G003940 vs. NCBI nr
Match: XP_038898940.1 (pentatricopeptide repeat-containing protein At3g53170 isoform X1 [Benincasa hispida] >XP_038898941.1 pentatricopeptide repeat-containing protein At3g53170 isoform X1 [Benincasa hispida] >XP_038898942.1 pentatricopeptide repeat-containing protein At3g53170 isoform X1 [Benincasa hispida])

HSP 1 Score: 185.7 bits (470), Expect = 2.8e-43
Identity = 102/113 (90.27%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MEPYLHSRHARIFPCSSTSLTSTVASMASI-SPTPSFISSTHSRSLKRRSGQSSHALQRD 60
           MEPYLHS++A IFPCS TSLTSTV SMASI S TPSFISS+HSRSLKR SGQSS ALQRD
Sbjct: 1   MEPYLHSQNAPIFPCSPTSLTSTVISMASIRSSTPSFISSSHSRSLKRSSGQSSDALQRD 60

Query: 61  PKKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAIHENLWETALK 113
           PKKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAI ENLWETALK
Sbjct: 61  PKKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAIQENLWETALK 113

[Close]

BLAST of ClCG09G003940 vs. NCBI nr
Match: XP_038898944.1 (pentatricopeptide repeat-containing protein At3g53170 isoform X2 [Benincasa hispida])

HSP 1 Score: 185.7 bits (470), Expect = 2.8e-43
Identity = 102/113 (90.27%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MEPYLHSRHARIFPCSSTSLTSTVASMASI-SPTPSFISSTHSRSLKRRSGQSSHALQRD 60
           MEPYLHS++A IFPCS TSLTSTV SMASI S TPSFISS+HSRSLKR SGQSS ALQRD
Sbjct: 1   MEPYLHSQNAPIFPCSPTSLTSTVISMASIRSSTPSFISSSHSRSLKRSSGQSSDALQRD 60

Query: 61  PKKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAIHENLWETALK 113
           PKKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAI ENLWETALK
Sbjct: 61  PKKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAIQENLWETALK 113

[Close]

BLAST of ClCG09G003940 vs. NCBI nr
Match: XP_038898946.1 (pentatricopeptide repeat-containing protein At3g53170 isoform X4 [Benincasa hispida])

HSP 1 Score: 185.7 bits (470), Expect = 2.8e-43
Identity = 102/113 (90.27%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MEPYLHSRHARIFPCSSTSLTSTVASMASI-SPTPSFISSTHSRSLKRRSGQSSHALQRD 60
           MEPYLHS++A IFPCS TSLTSTV SMASI S TPSFISS+HSRSLKR SGQSS ALQRD
Sbjct: 1   MEPYLHSQNAPIFPCSPTSLTSTVISMASIRSSTPSFISSSHSRSLKRSSGQSSDALQRD 60

Query: 61  PKKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAIHENLWETALK 113
           PKKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAI ENLWETALK
Sbjct: 61  PKKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAIQENLWETALK 113

[Close]

BLAST of ClCG09G003940 vs. ExPASy Swiss-Prot
Match: Q9SCP4 (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-17
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 41  HSRSLKRRSGQSSHALQRDPKKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDE 100
           + R+ K  SG  S   Q DPKK LSRILR DAA+K IERKANS+KY  LWPKAVLEALDE
Sbjct: 8   NERTEKMNSGLISTRHQVDPKKELSRILRTDAAVKGIERKANSEKYLTLWPKAVLEALDE 67

Query: 101 AIHENLWETALK 113
           AI EN W++ALK
Sbjct: 68  AIKENRWQSALK 79

[Close]

BLAST of ClCG09G003940 vs. ExPASy TrEMBL
Match: A0A5D3CJ48 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00490 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.7e-49
Identity = 113/137 (82.48%), Postives = 119/137 (86.86%), Query Frame = 0


Query: 1   MEPYLHSRHARIFPCSSTSLTSTVASMASISPTPSFISSTHSRSLKRRSGQSSHALQRDP 60
           ME YLHS  A IF C STS TSTV SM S+S TP FISS+HSRSLKR S QSS ALQRDP
Sbjct: 1   MELYLHSPDATIFRCFSTSFTSTVISMTSMSSTPYFISSSHSRSLKRSSTQSSDALQRDP 60

Query: 61  KKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAIHENLWETALKNPLALDVV 120
           KKGLSRILRKDAAIKAIE+KANSKKYNNLWPKAVLEALDEAI ENLWETALKNP A +V+
Sbjct: 61  KKGLSRILRKDAAIKAIEKKANSKKYNNLWPKAVLEALDEAIQENLWETALKNPFAPEVL 120

Query: 121 QSSSFSNFNMTAKASSS 138
           QSSSFSNFNMTA ASS+
Sbjct: 121 QSSSFSNFNMTANASSA 137

[Close]

BLAST of ClCG09G003940 vs. ExPASy TrEMBL
Match: A0A1S3CEG4 (pentatricopeptide repeat-containing protein At3g53170 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499948 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 5.8e-39
Identity = 94/112 (83.93%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MEPYLHSRHARIFPCSSTSLTSTVASMASISPTPSFISSTHSRSLKRRSGQSSHALQRDP 60
           ME YLHS  A IF C STS TSTV SM S+S TP FISS+HSRSLKR S QSS ALQRDP
Sbjct: 1   MELYLHSPDATIFRCFSTSFTSTVISMTSMSSTPYFISSSHSRSLKRSSTQSSDALQRDP 60

Query: 61  KKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAIHENLWETALK 113
           KKGLSRILRKDAAIKAIE+KANSKKYNNLWPKAVLEALDEAI ENLWETALK
Sbjct: 61  KKGLSRILRKDAAIKAIEKKANSKKYNNLWPKAVLEALDEAIQENLWETALK 112

[Close]

BLAST of ClCG09G003940 vs. ExPASy TrEMBL
Match: A0A1S3CFP9 (pentatricopeptide repeat-containing protein At3g53170 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499948 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 5.8e-39
Identity = 94/112 (83.93%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MEPYLHSRHARIFPCSSTSLTSTVASMASISPTPSFISSTHSRSLKRRSGQSSHALQRDP 60
           ME YLHS  A IF C STS TSTV SM S+S TP FISS+HSRSLKR S QSS ALQRDP
Sbjct: 1   MELYLHSPDATIFRCFSTSFTSTVISMTSMSSTPYFISSSHSRSLKRSSTQSSDALQRDP 60

Query: 61  KKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAIHENLWETALK 113
           KKGLSRILRKDAAIKAIE+KANSKKYNNLWPKAVLEALDEAI ENLWETALK
Sbjct: 61  KKGLSRILRKDAAIKAIEKKANSKKYNNLWPKAVLEALDEAIQENLWETALK 112

[Close]

BLAST of ClCG09G003940 vs. ExPASy TrEMBL
Match: A0A0A0K9Q1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G426480 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.4e-38
Identity = 92/112 (82.14%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MEPYLHSRHARIFPCSSTSLTSTVASMASISPTPSFISSTHSRSLKRRSGQSSHALQRDP 60
           ME  LHS  A +F C STS TS V SMAS+S TP FISS+HSRSLKR S QSS ALQRDP
Sbjct: 1   MELCLHSPDATVFRCFSTSFTSKVISMASVSSTPYFISSSHSRSLKRTSTQSSDALQRDP 60

Query: 61  KKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAIHENLWETALK 113
           KKGLSRILR+DAAIKAIERKANSKKYNNLWPKAVLEALDEAI ENLWETALK
Sbjct: 61  KKGLSRILRRDAAIKAIERKANSKKYNNLWPKAVLEALDEAIQENLWETALK 112

[Close]

BLAST of ClCG09G003940 vs. ExPASy TrEMBL
Match: A0A6J1HAD9 (pentatricopeptide repeat-containing protein At3g53170 OS=Cucurbita moschata OX=3662 GN=LOC111461045 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 5.1e-35
Identity = 87/112 (77.68%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 1   MEPYLHSRHARIFPCSSTSLTSTVASMASISPTPSFISSTHSRSLKRRSGQSSHALQRDP 60
           MEP+LH  +A IF   S   TSTVASMASI+PTP FISS+ SR L R S QSS  LQRDP
Sbjct: 1   MEPHLHLHNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60

Query: 61  KKGLSRILRKDAAIKAIERKANSKKYNNLWPKAVLEALDEAIHENLWETALK 113
           KKGLSRILRKDAAI+AIERKANSKKYNNLWP+AVLEALDEAI ENLWET LK
Sbjct: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLK 112

[Close]

BLAST of ClCG09G003940 vs. TAIR 10
Match: AT3G53170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-19
Identity = 53/84 (63.10%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 29  SISPTPSFISSTHSRSLKRRSGQSSHALQRDPKKGLSRILRKDAAIKAIERKANSKKYNN 88
           SI+PT       + R+ K  SG  S   Q DPKK LSRILR DAA+K IERKANS+KY  
Sbjct: 46  SITPTMCSTKVPNERTEKMNSGLISTRHQVDPKKELSRILRTDAAVKGIERKANSEKYLT 105

Query: 89  LWPKAVLEALDEAIHENLWETALK 113
           LWPKAVLEALDEAI EN W++ALK
Sbjct: 106 LWPKAVLEALDEAIKENRWQSALK 129

The following BLAST results are available for this feature:

BLAST of ClCG09G003940 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10406.1	9.8e-49	82.48	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_038898945.1	2.8e-43	90.27	pentatricopeptide repeat-containing protein At3g53170 isoform X3 [Benincasa hisp...	[more]
XP_038898940.1	2.8e-43	90.27	pentatricopeptide repeat-containing protein At3g53170 isoform X1 [Benincasa hisp...	[more]
XP_038898944.1	2.8e-43	90.27	pentatricopeptide repeat-containing protein At3g53170 isoform X2 [Benincasa hisp...	[more]
XP_038898946.1	2.8e-43	90.27	pentatricopeptide repeat-containing protein At3g53170 isoform X4 [Benincasa hisp...	[more]

BLAST of ClCG09G003940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SCP4	2.1e-17	68.06	Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX...	[more]

BLAST of ClCG09G003940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJ48	4.7e-49	82.48	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CEG4	5.8e-39	83.93	pentatricopeptide repeat-containing protein At3g53170 isoform X1 OS=Cucumis melo...	[more]
A0A1S3CFP9	5.8e-39	83.93	pentatricopeptide repeat-containing protein At3g53170 isoform X2 OS=Cucumis melo...	[more]
A0A0A0K9Q1	8.4e-38	82.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G426480 PE=4 SV=1	[more]
A0A6J1HAD9	5.1e-35	77.68	pentatricopeptide repeat-containing protein At3g53170 OS=Cucurbita moschata OX=3...	[more]

BLAST of ClCG09G003940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53170.1	3.9e-19	63.10	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..63
None	No IPR available	PANTHER	PTHR47933:SF35	OS03G0115300 PROTEIN	coord: 26..112
None	No IPR available	PANTHER	PTHR47933	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL	coord: 26..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G003940.1	ClCG09G003940.1	mRNA