ClCG08G014170 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G014170
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DNA-directed RNA polymerase subunit
Location	CG_Chr08: 26980603 .. 26984794 (+)
RNA-Seq Expression	ClCG08G014170
Synteny	ClCG08G014170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCGATAATTTTGAATGAAATCGAAAATCTAATTCGGACTTTTGGCTTCCGTCCGGTTCGTATTTCGGCGCGGTTCGATGAGTATCTACACATTCGAGCGGGCGGTTCGGTCCAGAATTGCGTGTACGAACCGAACCAGTTTACAGTGCAGCTCCCAGTTCAACCTTCCAAAACCCAGAACTTAGAGTGAAACCATCTTGTTTTCGTTGTCCAGCATTAGCAAGTTTTCTCTAAGGTCGATTATTGATCCATATCTCCGCCCAGCTCAACTGTCTCTGGCTAACTTTTTGACAAGAAATCTGTGAAAGCTCTTTCTCGTGCGTCATTAATTTTAGCAGGAATCTTGAATAGAGTAAATGATAAGTTGGCTACTTTGAGCTTACTACTTGTTATTTATGAGGAGGTCCCTTGAGGTTCTAACTGATTTTTTTTTGGATATCTGAATGACCCATCTTAGTTATTCTTTGGAGAGACATTATGTTTGTTTTAGTCTATTGTGGGTATGAATTCCCTCATGCTTTTCCATTGATGTTCTAGTTTATTGACTAATTCTAGATGAAGCGCAAATTTCTCCTATAACGTTGTTAATTGCCTCCGATTGTTCTTTTCCTTGCTTCCTTTACAGCTTACTTTCTTTGGGAATTCTGTTTACCAAATCCCCTTTTTGCTATCACAATTCGACCACCCTTTTTTGGCTCAACTTTCCTGTCTTTTAGAGTGTTAGCATTTTTTGTCTCTTATTTGTTGTACTTGTACTTCTCGTAGTTCTTCTAACTTTTCTCTTTTATTTTTTGTGGACATTGTTAGTCAGAAAGCTCTTGGGGAAGCAGCAAGAGCCCCTCATGGCTTATTCTCGTGGACACGACTTCTTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCAGCTCAACTAAGTATGTCGAGTGTCCTTTGTGCAAGTCTAGGCGAAGTGCAAAAGGTGGGCATACACATTGGATTTAATCTTATTGCATTGTAGTTATTTACTTCTAGTTTTTCATTTTGGATAATTTAAACATTCCAACACCCGTTACTTATATGAATAAGTGCTTAATCAGGTATGCCTTGCAATAATTAAACTCTGTTTTTATCTTATTACATTGTAGTGTAGTTCATTTTCCCTTCATATTTATCTGAGTAAAACGTGAAAAACATCGTCTATTTCTTCCATTTCCTATCTCGAGAATCTATTTTTCTTATCTTTTTACTAGAACAGATTGTGTCTGGGTTTTGCAGGTTGGTTTTTCTTGATCTATCAACTTAATTTTTAATAATTCCTCTTGTAGATAGGAGAGTAAGAGTTCCTATTTGGGAATTTGCACCATCTTCTGTTTTGAGTGTTCAACTTTGAAAGCATGTTTTCTTACCCAAAAAACAGTGTTCAACATGAGAAGTTGACTATTATTATTTGATGAACAACTAGCTTTCATTAGGATGGATGATGGTAAATTAGAAAAACAAATAAGAAAAAACCCATCTCAAATACGACACAAAGAACCTGCCAGTTGGATTAAGCAGTTGAAGCCATCTGCGGATAAGGAAGAAAAATAAAAGGAGAAAGATGATCCCTTGATGCAGCCAAACCTTTCATCTAGCTTTGCTATTCAGAAAAGAACCAAGGAGTCCAGAGACGAGAGTCAACCTTTAATCCATATTATTCTCCTCTGCCCAACTCATTAGCTGTAAGGATTGAGTCTATAATTTGGAAATGCTCAGCATTGAAATGATTCTAGAGAGGATAGTTTTGAATCTATTTACAAACATTTATCAAGAATTCCTTGTAAGGGACCATAGTTAGGGAGGATTATGGGTCTATTGTCTTTCACTTCCTTGCCGTCATCCTCCTTAGCCATAAAGGCAATATAAGTCTTGGTTATATTCACACCACGAACTCCTTTCTTAAAGAAGCCAAGATGTTGACATGGTATCATGCTTGAGAGTATCCCAAGTTTTTGTGAAGGAATTCTAAGGAAAACCCATCTGGACCCATAGCTTGCTTGGCCTTGACCAAGACTAGAAATAGCCTTTGGAGTTTGGAACTTTATGCTAAATAAAAGCCTACAGCCTACAGGAGTAGAATACCGGCTGTAGAGATAGAATTCCAACTCAGACCGTGGAAGATTATGTGGTCCTCTCAGCTTAGTACAGTAGACTGCTGGGGTTCTGACAATTGGAACCTTAAGTTCAGACCGCAACTGACTGATGTAGGTGAATGCATAGGTTGAGTCACTGATTATTTTGAAAGCTTGTTTTTCAAACTAGCAAGATGGACCTTGGAAGCTTTGATTTGATTTCTTCTAAAACCTATTTTCCTACCATGGATGAGTTCCATAATTTCTCCATAAAAAATGCTATAGGGAAAAAGAGATGCCCAAAAAGGTTAAATTCTTTGCTTAGGACGTCGGTCTTGGTATGGAATCTCTTTTAAGTTCCCAACAATTTTTCAGATGCCCTCCCTCTCTCTCTCACAGTTAGTTAAGTAATTGGTTAGCTTCTAAAAAAGGAGACATAGTCTCAATAAATGGCTAAGAGGTCATGAGTTCAATCCATAGTGGTCACCTACGTAAGAATTAATATCCTACAAATTTCCTTGACACTCAAATGTTGTAGGGTCAGGTGGGTTGTCCCGTGAGATTAGTCGAGGTGCGCGTAAGCTGACTCAGACACTCACGAATAAAAAAAAAAAAAAAACTAATTAGTTAGCTTCTTTTTACATAAGAAGAACCAACTCAACTTGTTTTGCTTGTATAACTACTCAAGGAAAAACTTCTAATTACAGAAATTAACATAAATACTGCTCAATTATGACTTCTACTCACCCCTCAATATAGTATTGCCCTTGGTAGTATTGCGCCTAAGATGTGTGACATATTGGTGGGTGGTGGCTATCATAAAGCTCATCCATAAGACGTGCATGGAAAAGACAGGTATATATATATATAAAATATTTATATAATCGATTATTTCCATACTTCAATTACATGGTGAAAGGCTCTAGCCATTAGTGTGAGTGGAACCAAATTTTAACTACTATCAGCTGAGCAAAGACTAAGATATCGAACTCATTGAAATTATCAGGCTGGTTACTCGTCTTATTCAAGGGCCCAAGTGCCATCATGATTTCCCTCAATGTTATTCTACTCTACATCTTGAAATTGGTGTTCTGAAGGATGTATACCAAATTATTTTAGAATTTGATGCTTTGCTTTCATGATTGGAGATTTTGAAGTCGAGCAAATGCAGTTGAGAAACTATTGTTTTAATGTTTTATGCACTCTTTTATTTGACATCTCTAACCTTATTGTTGTGCGGCTTATTTCAGAGATCATCGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGTATGCCTTTTGAATCATAAACATTATCCCCATAGGCCTAAGGCATAGTATCCTCCCCGCAACTGGTCATTGGCGATACTTTTGAACTTTAGGATACTCTGATAATTTCTGCTACTTTTATGCTGCTTGCTAGGATTGTTACTGGATGAATTTATCTGCGGATTTTGGGAAGGGCTTAAATTAAGGAATCTGGATAATGGTCTCTAGGTCTAGGGTAGGCAAATCAATAAACCAACCAGACCCTGGATGTTCTTGTTGGGTTGAAAATCTCAAACCGTGAAAATTTGTAGTATAAGCAAAAGTTTATATGATCTGATCTTGATATCCCTCCTCCCTCCCCCCCTATTTGGTTATCAGACATCCAAGAAATGTTTTGATTTTGAAATCCTCGTGTGAGAATTTGCAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGCTAGCAAAGGTAGTAGGAGAAAAAAGTGTATGGTATTAATATTTTGCTTGAGATATGTAAGTAGCTTAATATGAAGCTGTGTCATGGTTTGACAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACACTTTACAAACATTAAACATAAAACTCTAATTCCTGGACCCTTTTGGCTTTCGTTCCTTTCGTTTTCCCATTAAAAAGAGTCATAAATTTGAGTTTGGTTTTGAATAAAAATGCAGATGAGATCTGCTGATGAAGGGCAAACCACATTTTATACCTGCACCAAATGCCATCATCAGACCAGAGAGAATTGA

mRNA sequence

ATGGTTGCGATAATTTTGAATGAAATCGAAAATCTAATTCGGACTTTTGGCTTCCGTCCGGTTCGTATTTCGGCGCGGTTCGATGAGTATCTACACATTCGAGCGGGCGGTTCGGTCCAGAATTGCGTGTACGAACCGAACCAGTTTACAGTGCAGCTCCCAGTTCAACCTTCCAAAACCCAGAACTTAGAAAAGCTCTTGGGGAAGCAGCAAGAGCCCCTCATGGCTTATTCTCGTGGACACGACTTCTTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCAGCTCAACTAAGTATGTCGAGTGTCCTTTGTGCAAGTCTAGGCGAAGTGCAAAAGAGATCATCGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGCTAGCAAAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCTGCTGATGAAGGGCAAACCACATTTTATACCTGCACCAAATGCCATCATCAGACCAGAGAGAATTGA

Coding sequence (CDS)

ATGGTTGCGATAATTTTGAATGAAATCGAAAATCTAATTCGGACTTTTGGCTTCCGTCCGGTTCGTATTTCGGCGCGGTTCGATGAGTATCTACACATTCGAGCGGGCGGTTCGGTCCAGAATTGCGTGTACGAACCGAACCAGTTTACAGTGCAGCTCCCAGTTCAACCTTCCAAAACCCAGAACTTAGAAAAGCTCTTGGGGAAGCAGCAAGAGCCCCTCATGGCTTATTCTCGTGGACACGACTTCTTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCAGCTCAACTAAGTATGTCGAGTGTCCTTTGTGCAAGTCTAGGCGAAGTGCAAAAGAGATCATCGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGCTAGCAAAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCTGCTGATGAAGGGCAAACCACATTTTATACCTGCACCAAATGCCATCATCAGACCAGAGAGAATTGA

Protein sequence

MVAIILNEIENLIRTFGFRPVRISARFDEYLHIRAGGSVQNCVYEPNQFTVQLPVQPSKTQNLEKLLGKQQEPLMAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

Homology

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BLAST of ClCG08G014170 vs. NCBI nr
Match: KAG6598510.1 (DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245.7 bits (626), Expect = 3.1e-61
Identity = 123/148 (83.11%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 43  VYEPNQFTVQLPVQPSKTQNLEKLLGKQQEPLMAYSRGHDFLFCNLCGTMLSFSSTKYVE 102
           +Y   Q  +    +P K+ +LE  LG+   P MAYSRGHDFLFCNLCGTMLSFSSTKYVE
Sbjct: 1   MYSQTQINLFSKSRPDKS-SLE-ALGEAARPFMAYSRGHDFLFCNLCGTMLSFSSTKYVE 60

Query: 103 CPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWF 162
           CPLCKSRRSAKEI+GREISYTVTAEEIRKQLGISLIDEEKMQL+KERRRCEKCGNDEAWF
Sbjct: 61  CPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLSKERRRCEKCGNDEAWF 120

Query: 163 ESRQMRSADEGQTTFYTCTKCHHQTREN 191
           ESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 121 ESRQMRSADEGQTTFYTCTKCHHQTREN 146

[Close]

BLAST of ClCG08G014170 vs. NCBI nr
Match: XP_023546814.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo] >KAG7029447.1 DNA-directed RNA polymerase I subunit RPA12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.4 bits (607), Expect = 5.0e-59
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 75  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 134
           MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEI+GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 135 ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 191
           ISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of ClCG08G014170 vs. NCBI nr
Match: XP_022144336.1 (DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_022144337.1 DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia])

HSP 1 Score: 237.3 bits (604), Expect = 1.1e-58
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 75  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 134
           MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 135 ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 191
           ISLIDEEK+QL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of ClCG08G014170 vs. NCBI nr
Match: XP_022997634.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima] >XP_022997635.1 DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima])

HSP 1 Score: 236.1 bits (601), Expect = 2.5e-58
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 75  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 134
           MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAK IIGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKGIIGREISYTVTAEEIRKQLG 60

Query: 135 ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 191
           ISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of ClCG08G014170 vs. NCBI nr
Match: XP_038886279.1 (DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886280.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886281.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886282.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida])

HSP 1 Score: 236.1 bits (601), Expect = 2.5e-58
Identity = 113/116 (97.41%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 75  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 134
           MAYSRGHDFLFCNLCGTMLSFSSTKYV+CPLCKS+RSAKEIIGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 135 ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 191
           ISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of ClCG08G014170 vs. ExPASy Swiss-Prot
Match: Q5TM50 (DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=POLR1H PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.9e-11
Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 82  DFLFCNLCGTMLSFSSTK-YVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDE 141
           D  FC+ CG++L     +  V C  C    + ++  G+ +  +V   ++   + +S+ + 
Sbjct: 16  DLDFCSDCGSVLPLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75

Query: 142 EKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 191
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 76  PECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]

BLAST of ClCG08G014170 vs. ExPASy Swiss-Prot
Match: Q1RMP0 (DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=POLR1H PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.0e-11
Identity = 37/110 (33.64%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 82  DFLFCNLCGTMLSFSSTK-YVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDE 141
           D  FC  CG++L     +  V C  C    + ++  G+ +  +V   ++   + +S+ + 
Sbjct: 13  DLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRDFEGKVVKTSVVFNKLGTAMPLSMEEG 72

Query: 142 EKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 191
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 73  PEFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 122

[Close]

BLAST of ClCG08G014170 vs. ExPASy Swiss-Prot
Match: Q9P1U0 (DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=POLR1H PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 82  DFLFCNLCGTMLSFSSTK-YVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDE 141
           D  FC+ CG++L     +  V C  C    + ++  G+ +  +V   ++   + +S+ + 
Sbjct: 16  DLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75

Query: 142 EKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 191
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 76  PECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]

BLAST of ClCG08G014170 vs. ExPASy Swiss-Prot
Match: Q1XHV8 (DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=POLR1H PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 82  DFLFCNLCGTMLSFSSTK-YVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDE 141
           D  FC+ CG++L     +  V C  C    + ++  G+ +  +V   ++   + +S+ + 
Sbjct: 16  DLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75

Query: 142 EKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 191
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 76  PECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]

BLAST of ClCG08G014170 vs. ExPASy Swiss-Prot
Match: O94703 (DNA-directed RNA polymerase I subunit RPA12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa12 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-10
Identity = 33/111 (29.73%), Postives = 59/111 (53.15%), Query Frame = 0


Query: 84  LFCNLCGTMLSFSSTKYVECPLCK----SRRSAKEIIGREISYTVTAEEIRKQLGISLID 143
           +FC+ CG +L  ++ ++  C  C+    S + A  ++  + S +     ++ +  I  ++
Sbjct: 8   IFCSECGNLLESTTAQWTTCDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSIVQVE 67

Query: 144 EEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 191
            +K + A    +C KCGND   F + Q+RSADEG T FY C +C ++   N
Sbjct: 68  SQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTN 118

[Close]

BLAST of ClCG08G014170 vs. ExPASy TrEMBL
Match: A0A6J1CTE6 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111014043 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 5.4e-59
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 75  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 134
           MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 135 ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 191
           ISLIDEEK+QL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of ClCG08G014170 vs. ExPASy TrEMBL
Match: A0A6J1KC19 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.2e-58
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 75  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 134
           MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAK IIGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKGIIGREISYTVTAEEIRKQLG 60

Query: 135 ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 191
           ISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of ClCG08G014170 vs. ExPASy TrEMBL
Match: A0A6J1HDS4 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111463020 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.6e-58
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 75  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 134
           MAYS GHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEI+GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSGGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 135 ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 191
           ISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of ClCG08G014170 vs. ExPASy TrEMBL
Match: A0A0A0LKC4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 2.0e-58
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 75  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 134
           MAYSRGHDFLFCNLCGTMLSF STKYVECP CKSRRSAKEI+GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 135 ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 191
           ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of ClCG08G014170 vs. ExPASy TrEMBL
Match: A0A1S3BBZ4 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.9e-57
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 75  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 134
           MAYSRGHDFLFCNLCGTMLSF STKYVECPLCKS+RSAKEI GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60

Query: 135 ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 191
           ISLI EEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of ClCG08G014170 vs. TAIR 10
Match: AT3G25940.1 (TFIIB zinc-binding protein )

HSP 1 Score: 134.4 bits (337), Expect = 9.4e-32
Identity = 67/118 (56.78%), Postives = 87/118 (73.73%), Query Frame = 0


Query: 75  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 134
           M  SR  +FLFCNLCGTML   STKY ECP CK+ R+AK+II +EI+YTV+AE+IR++LG
Sbjct: 1   MEKSRESEFLFCNLCGTMLVLKSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELG 60

Query: 135 ISLIDEE---KMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 190
           ISL  E+   + +L K ++ CEKC + E  + +RQ RSADEGQTT+YTC  C H+  E
Sbjct: 61  ISLFGEKTQAEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRFTE 118

[Close]

BLAST of ClCG08G014170 vs. TAIR 10
Match: AT1G20065.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). )

HSP 1 Score: 86.3 bits (212), Expect = 2.9e-17
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 75  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 134
           M  SR  D LFCNLCGTML   STKY ECPLC++ R+ KEII + ++YTVT E+IR++LG
Sbjct: 1   MEKSRESDILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTEDIRRELG 60

Query: 135 IS 137
           IS
Sbjct: 61  IS 62

[Close]

BLAST of ClCG08G014170 vs. TAIR 10
Match: AT1G20065.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). )

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-13
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 75  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAE 128
           M  SR  D LFCNLCGTML   STKY ECPLC++ R+ KEII + ++YTVT E
Sbjct: 1   MEKSRESDILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTE 53

[Close]

BLAST of ClCG08G014170 vs. TAIR 10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 51.2 bits (121), Expect = 1.1e-06
Identity = 32/110 (29.09%), Postives = 56/110 (50.91%), Query Frame = 0


Query: 85  FCNLCGTMLSF---SSTKYV--ECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLID 144
           FC  CG +L +    S+++    CP   +     EI  +++        ++K +   +  
Sbjct: 3   FCPTCGNLLRYEGGGSSRFFCSTCPYVANIERRVEIKKKQLL-------VKKSIEPVVTK 62

Query: 145 EEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 190
           ++    A+    C +CG+D+A+F+S Q+RSADE ++ FY C KC    RE
Sbjct: 63  DDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105

[Close]

BLAST of ClCG08G014170 vs. TAIR 10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 50.8 bits (120), Expect = 1.4e-06
Identity = 31/107 (28.97%), Postives = 50/107 (46.73%), Query Frame = 0


Query: 85  FCNLCGTMLSF--SSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDEEK 144
           FC  CG +L +         C  C         I R++        ++K +   +  ++ 
Sbjct: 3   FCPTCGNLLRYEGGGNSRFFCSTC----PYVAYIQRQVEIKKKQLLVKKSIEAVVTKDDI 62

Query: 145 MQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 190
              A+    C +CG+D+A+F+S Q+RSADE ++ FY C KC    RE
Sbjct: 63  PTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105

The following BLAST results are available for this feature:

BLAST of ClCG08G014170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598510.1	3.1e-61	83.11	DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma sub...	[more]
XP_023546814.1	5.0e-59	98.28	DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo] >K...	[more]
XP_022144336.1	1.1e-58	98.28	DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_02214...	[more]
XP_022997634.1	2.5e-58	98.28	DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima] >XP_02299763...	[more]
XP_038886279.1	2.5e-58	97.41	DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] ...	[more]

BLAST of ClCG08G014170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5TM50	6.9e-11	33.64	DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=POLR1H ...	[more]
Q1RMP0	9.0e-11	33.64	DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=POLR1H PE=2...	[more]
Q9P1U0	1.2e-10	33.64	DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=POLR1H PE...	[more]
Q1XHV8	1.2e-10	33.64	DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=POLR1H...	[more]
O94703	3.4e-10	29.73	DNA-directed RNA polymerase I subunit RPA12 OS=Schizosaccharomyces pombe (strain...	[more]

BLAST of ClCG08G014170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTE6	5.4e-59	98.28	DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110140...	[more]
A0A6J1KC19	1.2e-58	98.28	DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 ...	[more]
A0A6J1HDS4	1.6e-58	97.41	DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11146302...	[more]
A0A0A0LKC4	2.0e-58	97.41	DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 P...	[more]
A0A1S3BBZ4	2.9e-57	96.55	DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3...	[more]

BLAST of ClCG08G014170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25940.1	9.4e-32	56.78	TFIIB zinc-binding protein	[more]
AT1G20065.1	2.9e-17	62.90	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G20065.2	1.5e-13	62.26	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT4G07950.1	1.1e-06	29.09	DNA-directed RNA polymerase, subunit M, archaeal	[more]
AT1G01210.1	1.4e-06	28.97	DNA-directed RNA polymerase, subunit M, archaeal	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001222	Zinc finger, TFIIS-type	SMART	SM00440	Cys4_2	coord: 150..189 e-value: 3.7E-12 score: 56.4
IPR001222	Zinc finger, TFIIS-type	PFAM	PF01096	TFIIS_C	coord: 151..186 e-value: 2.1E-15 score: 56.3
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS51133	ZF_TFIIS_2	coord: 148..188 score: 12.826397
None	No IPR available	GENE3D	2.20.25.10		coord: 136..189 e-value: 2.8E-16 score: 60.7
None	No IPR available	PANTHER	PTHR11239:SF19	DNA-DIRECTED RNA POLYMERASE SUBUNIT	coord: 75..188
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 129..190
IPR012164	DNA-directed RNA polymerase subunit/transcription factor S	PANTHER	PTHR11239	DNA-DIRECTED RNA POLYMERASE	coord: 75..188
IPR034004	Pol I subunit A12, C-terminal zinc ribbon	CDD	cd10507	Zn-ribbon_RPA12	coord: 150..190 e-value: 8.75037E-22 score: 81.4804

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G014170.2	ClCG08G014170.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006379	mRNA cleavage
biological_process	GO:0006363	termination of RNA polymerase I transcription
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding