
ClCG08G014170 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTGCGATAATTTTGAATGAAATCGAAAATCTAATTCGGACTTTTGGCTTCCGTCCGGTTCGTATTTCGGCGCGGTTCGATGAGTATCTACACATTCGAGCGGGCGGTTCGGTCCAGAATTGCGTGTACGAACCGAACCAGTTTACAGTGCAGCTCCCAGTTCAACCTTCCAAAACCCAGAACTTAGAGTGAAACCATCTTGTTTTCGTTGTCCAGCATTAGCAAGTTTTCTCTAAGGTCGATTATTGATCCATATCTCCGCCCAGCTCAACTGTCTCTGGCTAACTTTTTGACAAGAAATCTGTGAAAGCTCTTTCTCGTGCGTCATTAATTTTAGCAGGAATCTTGAATAGAGTAAATGATAAGTTGGCTACTTTGAGCTTACTACTTGTTATTTATGAGGAGGTCCCTTGAGGTTCTAACTGATTTTTTTTTGGATATCTGAATGACCCATCTTAGTTATTCTTTGGAGAGACATTATGTTTGTTTTAGTCTATTGTGGGTATGAATTCCCTCATGCTTTTCCATTGATGTTCTAGTTTATTGACTAATTCTAGATGAAGCGCAAATTTCTCCTATAACGTTGTTAATTGCCTCCGATTGTTCTTTTCCTTGCTTCCTTTACAGCTTACTTTCTTTGGGAATTCTGTTTACCAAATCCCCTTTTTGCTATCACAATTCGACCACCCTTTTTTGGCTCAACTTTCCTGTCTTTTAGAGTGTTAGCATTTTTTGTCTCTTATTTGTTGTACTTGTACTTCTCGTAGTTCTTCTAACTTTTCTCTTTTATTTTTTGTGGACATTGTTAGTCAGAAAGCTCTTGGGGAAGCAGCAAGAGCCCCTCATGGCTTATTCTCGTGGACACGACTTCTTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCAGCTCAACTAAGTATGTCGAGTGTCCTTTGTGCAAGTCTAGGCGAAGTGCAAAAGGTGGGCATACACATTGGATTTAATCTTATTGCATTGTAGTTATTTACTTCTAGTTTTTCATTTTGGATAATTTAAACATTCCAACACCCGTTACTTATATGAATAAGTGCTTAATCAGGTATGCCTTGCAATAATTAAACTCTGTTTTTATCTTATTACATTGTAGTGTAGTTCATTTTCCCTTCATATTTATCTGAGTAAAACGTGAAAAACATCGTCTATTTCTTCCATTTCCTATCTCGAGAATCTATTTTTCTTATCTTTTTACTAGAACAGATTGTGTCTGGGTTTTGCAGGTTGGTTTTTCTTGATCTATCAACTTAATTTTTAATAATTCCTCTTGTAGATAGGAGAGTAAGAGTTCCTATTTGGGAATTTGCACCATCTTCTGTTTTGAGTGTTCAACTTTGAAAGCATGTTTTCTTACCCAAAAAACAGTGTTCAACATGAGAAGTTGACTATTATTATTTGATGAACAACTAGCTTTCATTAGGATGGATGATGGTAAATTAGAAAAACAAATAAGAAAAAACCCATCTCAAATACGACACAAAGAACCTGCCAGTTGGATTAAGCAGTTGAAGCCATCTGCGGATAAGGAAGAAAAATAAAAGGAGAAAGATGATCCCTTGATGCAGCCAAACCTTTCATCTAGCTTTGCTATTCAGAAAAGAACCAAGGAGTCCAGAGACGAGAGTCAACCTTTAATCCATATTATTCTCCTCTGCCCAACTCATTAGCTGTAAGGATTGAGTCTATAATTTGGAAATGCTCAGCATTGAAATGATTCTAGAGAGGATAGTTTTGAATCTATTTACAAACATTTATCAAGAATTCCTTGTAAGGGACCATAGTTAGGGAGGATTATGGGTCTATTGTCTTTCACTTCCTTGCCGTCATCCTCCTTAGCCATAAAGGCAATATAAGTCTTGGTTATATTCACACCACGAACTCCTTTCTTAAAGAAGCCAAGATGTTGACATGGTATCATGCTTGAGAGTATCCCAAGTTTTTGTGAAGGAATTCTAAGGAAAACCCATCTGGACCCATAGCTTGCTTGGCCTTGACCAAGACTAGAAATAGCCTTTGGAGTTTGGAACTTTATGCTAAATAAAAGCCTACAGCCTACAGGAGTAGAATACCGGCTGTAGAGATAGAATTCCAACTCAGACCGTGGAAGATTATGTGGTCCTCTCAGCTTAGTACAGTAGACTGCTGGGGTTCTGACAATTGGAACCTTAAGTTCAGACCGCAACTGACTGATGTAGGTGAATGCATAGGTTGAGTCACTGATTATTTTGAAAGCTTGTTTTTCAAACTAGCAAGATGGACCTTGGAAGCTTTGATTTGATTTCTTCTAAAACCTATTTTCCTACCATGGATGAGTTCCATAATTTCTCCATAAAAAATGCTATAGGGAAAAAGAGATGCCCAAAAAGGTTAAATTCTTTGCTTAGGACGTCGGTCTTGGTATGGAATCTCTTTTAAGTTCCCAACAATTTTTCAGATGCCCTCCCTCTCTCTCTCACAGTTAGTTAAGTAATTGGTTAGCTTCTAAAAAAGGAGACATAGTCTCAATAAATGGCTAAGAGGTCATGAGTTCAATCCATAGTGGTCACCTACGTAAGAATTAATATCCTACAAATTTCCTTGACACTCAAATGTTGTAGGGTCAGGTGGGTTGTCCCGTGAGATTAGTCGAGGTGCGCGTAAGCTGACTCAGACACTCACGAATAAAAAAAAAAAAAAAACTAATTAGTTAGCTTCTTTTTACATAAGAAGAACCAACTCAACTTGTTTTGCTTGTATAACTACTCAAGGAAAAACTTCTAATTACAGAAATTAACATAAATACTGCTCAATTATGACTTCTACTCACCCCTCAATATAGTATTGCCCTTGGTAGTATTGCGCCTAAGATGTGTGACATATTGGTGGGTGGTGGCTATCATAAAGCTCATCCATAAGACGTGCATGGAAAAGACAGGTATATATATATATAAAATATTTATATAATCGATTATTTCCATACTTCAATTACATGGTGAAAGGCTCTAGCCATTAGTGTGAGTGGAACCAAATTTTAACTACTATCAGCTGAGCAAAGACTAAGATATCGAACTCATTGAAATTATCAGGCTGGTTACTCGTCTTATTCAAGGGCCCAAGTGCCATCATGATTTCCCTCAATGTTATTCTACTCTACATCTTGAAATTGGTGTTCTGAAGGATGTATACCAAATTATTTTAGAATTTGATGCTTTGCTTTCATGATTGGAGATTTTGAAGTCGAGCAAATGCAGTTGAGAAACTATTGTTTTAATGTTTTATGCACTCTTTTATTTGACATCTCTAACCTTATTGTTGTGCGGCTTATTTCAGAGATCATCGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGTATGCCTTTTGAATCATAAACATTATCCCCATAGGCCTAAGGCATAGTATCCTCCCCGCAACTGGTCATTGGCGATACTTTTGAACTTTAGGATACTCTGATAATTTCTGCTACTTTTATGCTGCTTGCTAGGATTGTTACTGGATGAATTTATCTGCGGATTTTGGGAAGGGCTTAAATTAAGGAATCTGGATAATGGTCTCTAGGTCTAGGGTAGGCAAATCAATAAACCAACCAGACCCTGGATGTTCTTGTTGGGTTGAAAATCTCAAACCGTGAAAATTTGTAGTATAAGCAAAAGTTTATATGATCTGATCTTGATATCCCTCCTCCCTCCCCCCCTATTTGGTTATCAGACATCCAAGAAATGTTTTGATTTTGAAATCCTCGTGTGAGAATTTGCAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGCTAGCAAAGGTAGTAGGAGAAAAAAGTGTATGGTATTAATATTTTGCTTGAGATATGTAAGTAGCTTAATATGAAGCTGTGTCATGGTTTGACAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACACTTTACAAACATTAAACATAAAACTCTAATTCCTGGACCCTTTTGGCTTTCGTTCCTTTCGTTTTCCCATTAAAAAGAGTCATAAATTTGAGTTTGGTTTTGAATAAAAATGCAGATGAGATCTGCTGATGAAGGGCAAACCACATTTTATACCTGCACCAAATGCCATCATCAGACCAGAGAGAATTGA ATGGTTGCGATAATTTTGAATGAAATCGAAAATCTAATTCGGACTTTTGGCTTCCGTCCGGTTCGTATTTCGGCGCGGTTCGATGAGTATCTACACATTCGAGCGGGCGGTTCGGTCCAGAATTGCGTGTACGAACCGAACCAGTTTACAGTGCAGCTCCCAGTTCAACCTTCCAAAACCCAGAACTTAGAAAAGCTCTTGGGGAAGCAGCAAGAGCCCCTCATGGCTTATTCTCGTGGACACGACTTCTTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCAGCTCAACTAAGTATGTCGAGTGTCCTTTGTGCAAGTCTAGGCGAAGTGCAAAAGAGATCATCGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGCTAGCAAAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCTGCTGATGAAGGGCAAACCACATTTTATACCTGCACCAAATGCCATCATCAGACCAGAGAGAATTGA ATGGTTGCGATAATTTTGAATGAAATCGAAAATCTAATTCGGACTTTTGGCTTCCGTCCGGTTCGTATTTCGGCGCGGTTCGATGAGTATCTACACATTCGAGCGGGCGGTTCGGTCCAGAATTGCGTGTACGAACCGAACCAGTTTACAGTGCAGCTCCCAGTTCAACCTTCCAAAACCCAGAACTTAGAAAAGCTCTTGGGGAAGCAGCAAGAGCCCCTCATGGCTTATTCTCGTGGACACGACTTCTTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCAGCTCAACTAAGTATGTCGAGTGTCCTTTGTGCAAGTCTAGGCGAAGTGCAAAAGAGATCATCGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGCTAGCAAAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCTGCTGATGAAGGGCAAACCACATTTTATACCTGCACCAAATGCCATCATCAGACCAGAGAGAATTGA MVAIILNEIENLIRTFGFRPVRISARFDEYLHIRAGGSVQNCVYEPNQFTVQLPVQPSKTQNLEKLLGKQQEPLMAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN Homology
BLAST of ClCG08G014170 vs. NCBI nr
Match: KAG6598510.1 (DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 245.7 bits (626), Expect = 3.1e-61 Identity = 123/148 (83.11%), Postives = 131/148 (88.51%), Query Frame = 0
BLAST of ClCG08G014170 vs. NCBI nr
Match: XP_023546814.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo] >KAG7029447.1 DNA-directed RNA polymerase I subunit RPA12 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 238.4 bits (607), Expect = 5.0e-59 Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of ClCG08G014170 vs. NCBI nr
Match: XP_022144336.1 (DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_022144337.1 DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia]) HSP 1 Score: 237.3 bits (604), Expect = 1.1e-58 Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of ClCG08G014170 vs. NCBI nr
Match: XP_022997634.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima] >XP_022997635.1 DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima]) HSP 1 Score: 236.1 bits (601), Expect = 2.5e-58 Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0
BLAST of ClCG08G014170 vs. NCBI nr
Match: XP_038886279.1 (DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886280.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886281.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886282.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida]) HSP 1 Score: 236.1 bits (601), Expect = 2.5e-58 Identity = 113/116 (97.41%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of ClCG08G014170 vs. ExPASy Swiss-Prot
Match: Q5TM50 (DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=POLR1H PE=3 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 6.9e-11 Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 0
BLAST of ClCG08G014170 vs. ExPASy Swiss-Prot
Match: Q1RMP0 (DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=POLR1H PE=2 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 9.0e-11 Identity = 37/110 (33.64%), Postives = 60/110 (54.55%), Query Frame = 0
BLAST of ClCG08G014170 vs. ExPASy Swiss-Prot
Match: Q9P1U0 (DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=POLR1H PE=1 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10 Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 0
BLAST of ClCG08G014170 vs. ExPASy Swiss-Prot
Match: Q1XHV8 (DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=POLR1H PE=3 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10 Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 0
BLAST of ClCG08G014170 vs. ExPASy Swiss-Prot
Match: O94703 (DNA-directed RNA polymerase I subunit RPA12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa12 PE=1 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 3.4e-10 Identity = 33/111 (29.73%), Postives = 59/111 (53.15%), Query Frame = 0
BLAST of ClCG08G014170 vs. ExPASy TrEMBL
Match: A0A6J1CTE6 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111014043 PE=3 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 5.4e-59 Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of ClCG08G014170 vs. ExPASy TrEMBL
Match: A0A6J1KC19 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 PE=3 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 1.2e-58 Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0
BLAST of ClCG08G014170 vs. ExPASy TrEMBL
Match: A0A6J1HDS4 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111463020 PE=3 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 1.6e-58 Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0
BLAST of ClCG08G014170 vs. ExPASy TrEMBL
Match: A0A0A0LKC4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 PE=3 SV=1) HSP 1 Score: 235.3 bits (599), Expect = 2.0e-58 Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 0
BLAST of ClCG08G014170 vs. ExPASy TrEMBL
Match: A0A1S3BBZ4 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3 SV=1) HSP 1 Score: 231.5 bits (589), Expect = 2.9e-57 Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 0
BLAST of ClCG08G014170 vs. TAIR 10
Match: AT3G25940.1 (TFIIB zinc-binding protein ) HSP 1 Score: 134.4 bits (337), Expect = 9.4e-32 Identity = 67/118 (56.78%), Postives = 87/118 (73.73%), Query Frame = 0
BLAST of ClCG08G014170 vs. TAIR 10
Match: AT1G20065.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). ) HSP 1 Score: 86.3 bits (212), Expect = 2.9e-17 Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 0
BLAST of ClCG08G014170 vs. TAIR 10
Match: AT1G20065.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). ) HSP 1 Score: 73.9 bits (180), Expect = 1.5e-13 Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 0
BLAST of ClCG08G014170 vs. TAIR 10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal ) HSP 1 Score: 51.2 bits (121), Expect = 1.1e-06 Identity = 32/110 (29.09%), Postives = 56/110 (50.91%), Query Frame = 0
BLAST of ClCG08G014170 vs. TAIR 10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal ) HSP 1 Score: 50.8 bits (120), Expect = 1.4e-06 Identity = 31/107 (28.97%), Postives = 50/107 (46.73%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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