ClCG08G012665 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G012665
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Methionyl-tRNA synthetase
Location	CG_Chr08: 25546334 .. 25546534 (-)
RNA-Seq Expression	ClCG08G012665
Synteny	ClCG08G012665

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTAGTATTTGTGTGCGATGAAGATCAAAGGGTATTATCAAGGCAACCAGCTCCAGGGGCATGCCCCTTCTGCGGAGGAATGATCCAAGCCACCGACGTTGAAAGCCAATGGAGGTTCTGTTTCCTTCCTCTTTACTGGAAAACCAAACGAAAGTTCTATTGCACTATGTGCACCAGACAACTCGTTATGCAGTAG

mRNA sequence

ATGTGTTTAGTATTTGTGTGCGATGAAGATCAAAGGGTATTATCAAGGCAACCAGCTCCAGGGGCATGCCCCTTCTGCGGAGGAATGATCCAAGCCACCGACGTTGAAAGCCAATGGAGGTTCTGTTTCCTTCCTCTTTACTGGAAAACCAAACGAAAGTTCTATTGCACTATGTGCACCAGACAACTCGTTATGCAGTAG

Coding sequence (CDS)

ATGTGTTTAGTATTTGTGTGCGATGAAGATCAAAGGGTATTATCAAGGCAACCAGCTCCAGGGGCATGCCCCTTCTGCGGAGGAATGATCCAAGCCACCGACGTTGAAAGCCAATGGAGGTTCTGTTTCCTTCCTCTTTACTGGAAAACCAAACGAAAGTTCTATTGCACTATGTGCACCAGACAACTCGTTATGCAGTAG

Protein sequence

MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCTRQLVMQ

Homology

[Close]

BLAST of ClCG08G012665 vs. NCBI nr
Match: XP_038884125.1 (uncharacterized protein LOC120075047 [Benincasa hispida])

HSP 1 Score: 151.0 bits (380), Expect = 3.6e-33
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60
          MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60

Query: 61 RQLVMQ 67
          RQLVMQ
Sbjct: 61 RQLVMQ 66

[Close]

BLAST of ClCG08G012665 vs. NCBI nr
Match: XP_008445081.1 (PREDICTED: uncharacterized protein LOC103488227 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 8.1e-33
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60
          MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCF+PLYWKTKRKFYCTMCT
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 60

Query: 61 RQLVMQ 67
          RQLVMQ
Sbjct: 61 RQLVMQ 66

[Close]

BLAST of ClCG08G012665 vs. NCBI nr
Match: XP_022962063.1 (uncharacterized protein LOC111462635 [Cucurbita moschata] >XP_022996793.1 uncharacterized protein LOC111491925 [Cucurbita maxima] >XP_023546190.1 uncharacterized protein LOC111805366 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.4 bits (376), Expect = 1.1e-32
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60
          MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60

Query: 61 RQLVMQ 67
          RQLV+Q
Sbjct: 61 RQLVIQ 66

[Close]

BLAST of ClCG08G012665 vs. NCBI nr
Match: KAG7029748.1 (hypothetical protein SDJN02_08090, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.4 bits (376), Expect = 1.1e-32
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1   MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60
           MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT
Sbjct: 72  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 131

Query: 61  RQLVMQ 67
           RQLV+Q
Sbjct: 132 RQLVIQ 137

[Close]

BLAST of ClCG08G012665 vs. NCBI nr
Match: XP_004138769.1 (uncharacterized protein LOC101206986 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 2.4e-32
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60
          MCLVFVCDEDQRVLSRQPAPG CPFCGGMIQATDVESQWRFCF+PLYWKTKRKFYCTMCT
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGVCPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 60

Query: 61 RQLVMQ 67
          RQLVMQ
Sbjct: 61 RQLVMQ 66

[Close]

BLAST of ClCG08G012665 vs. ExPASy TrEMBL
Match: A0A1S3BCK8 (uncharacterized protein LOC103488227 OS=Cucumis melo OX=3656 GN=LOC103488227 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.9e-33
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60
          MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCF+PLYWKTKRKFYCTMCT
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFVPLYWKTKRKFYCTMCT 60

Query: 61 RQLVMQ 67
          RQLVMQ
Sbjct: 61 RQLVMQ 66

[Close]

BLAST of ClCG08G012665 vs. ExPASy TrEMBL
Match: A0A6J1KC13 (uncharacterized protein LOC111491925 OS=Cucurbita maxima OX=3661 GN=LOC111491925 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.1e-33
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60
          MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60

Query: 61 RQLVMQ 67
          RQLV+Q
Sbjct: 61 RQLVIQ 66

[Close]

BLAST of ClCG08G012665 vs. ExPASy TrEMBL
Match: A0A6J1HDM3 (uncharacterized protein LOC111462635 OS=Cucurbita moschata OX=3662 GN=LOC111462635 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.1e-33
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60
          MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT
Sbjct: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60

Query: 61 RQLVMQ 67
          RQLV+Q
Sbjct: 61 RQLVIQ 66

[Close]

BLAST of ClCG08G012665 vs. ExPASy TrEMBL
Match: A0A6P3Z2S4 (uncharacterized protein LOC107405842 OS=Ziziphus jujuba OX=326968 GN=LOC107405842 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.9e-30
Identity = 57/66 (86.36%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60
          MCLVFVCDED+RV+SRQPAPGACP+CGGM+QA DVESQWRFCFLPLYWKTKRKFYC++CT
Sbjct: 1  MCLVFVCDEDERVVSRQPAPGACPYCGGMVQAMDVESQWRFCFLPLYWKTKRKFYCSLCT 60

Query: 61 RQLVMQ 67
          R+LV+Q
Sbjct: 61 RRLVVQ 66

[Close]

BLAST of ClCG08G012665 vs. ExPASy TrEMBL
Match: A0A6J1BVT7 (uncharacterized protein LOC111005173 OS=Momordica charantia OX=3673 GN=LOC111005173 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.7e-29
Identity = 55/66 (83.33%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60
          MCLVFVCDE+QRVLSRQPAPGACPFCGGM+QATD+++QW FCFLPLYWKTKRK YC++CT
Sbjct: 1  MCLVFVCDENQRVLSRQPAPGACPFCGGMVQATDIQTQWSFCFLPLYWKTKRKLYCSICT 60

Query: 61 RQLVMQ 67
          R+LV+Q
Sbjct: 61 RELVVQ 66

[Close]

BLAST of ClCG08G012665 vs. TAIR 10
Match: AT5G10695.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 99.8 bits (247), Expect = 9.0e-22
Identity = 39/65 (60.00%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60
          MCLVFVCD+D+RV+ R  APGACP+CGG +Q  DV SQWRFCF+PL  K+KR+  C+ C 
Sbjct: 1  MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60

Query: 61 RQLVM 66
          ++L++
Sbjct: 61 KRLIV 65

[Close]

BLAST of ClCG08G012665 vs. TAIR 10
Match: AT5G57123.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 93.6 bits (231), Expect = 6.4e-20
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60
          MCLV +CDE++  L RQ APG+CP+CGG +Q  DVE +W FCF+PL +K KRK+ C+ C 
Sbjct: 1  MCLVCLCDEEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCD 60

Query: 61 RQLVM 66
          R+LV+
Sbjct: 61 RRLVL 65

[Close]

BLAST of ClCG08G012665 vs. TAIR 10
Match: AT4G29905.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 86.3 bits (212), Expect = 1.0e-17
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60
          MCL  V  E++  L RQ APG CP+CGG + A D+E++W FCFLPL +K KRK+ C+ C 
Sbjct: 1  MCLEVVYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCE 60

Query: 61 RQLVM 66
          R LV+
Sbjct: 61 RHLVL 65

[Close]

BLAST of ClCG08G012665 vs. TAIR 10
Match: AT1G52855.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-09
Identity = 21/59 (35.59%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMC 60
          +C  F+ D+ ++V   +PA G C  CG      D+++  RFCF+P+YW++ R   C+ C
Sbjct: 2  VCFCFLVDQTRKVKRSKPAAGTCSRCGHCASIADMKTSTRFCFIPIYWRSWRAVVCSFC 60

[Close]

BLAST of ClCG08G012665 vs. TAIR 10
Match: AT3G15534.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52855.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 9.6e-08
Identity = 19/59 (32.20%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMC 60
          +C  F+ D+ ++V   +PA G C  CG   +  D+++  RFC +P+Y ++ R   C+ C
Sbjct: 2  VCFCFLVDQKRKVKGSKPAAGTCSRCGRGARVADMKTSTRFCLIPIYCRSWRAIVCSFC 60

The following BLAST results are available for this feature:

BLAST of ClCG08G012665 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884125.1	3.6e-33	100.00	uncharacterized protein LOC120075047 [Benincasa hispida]	[more]
XP_008445081.1	8.1e-33	98.48	PREDICTED: uncharacterized protein LOC103488227 [Cucumis melo]	[more]
XP_022962063.1	1.1e-32	98.48	uncharacterized protein LOC111462635 [Cucurbita moschata] >XP_022996793.1 unchar...	[more]
KAG7029748.1	1.1e-32	98.48	hypothetical protein SDJN02_08090, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004138769.1	2.4e-32	96.97	uncharacterized protein LOC101206986 [Cucumis sativus]	[more]

BLAST of ClCG08G012665 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG08G012665 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BCK8	3.9e-33	98.48	uncharacterized protein LOC103488227 OS=Cucumis melo OX=3656 GN=LOC103488227 PE=...	[more]
A0A6J1KC13	5.1e-33	98.48	uncharacterized protein LOC111491925 OS=Cucurbita maxima OX=3661 GN=LOC111491925...	[more]
A0A6J1HDM3	5.1e-33	98.48	uncharacterized protein LOC111462635 OS=Cucurbita moschata OX=3662 GN=LOC1114626...	[more]
A0A6P3Z2S4	6.9e-30	86.36	uncharacterized protein LOC107405842 OS=Ziziphus jujuba OX=326968 GN=LOC10740584...	[more]
A0A6J1BVT7	7.7e-29	83.33	uncharacterized protein LOC111005173 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

BLAST of ClCG08G012665 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10695.1	9.0e-22	60.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G57123.1	6.4e-20	56.92	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G29905.1	1.0e-17	53.85	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G52855.1	1.0e-09	35.59	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G15534.1	9.6e-08	32.20	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33320:SF20	METHIONYL-TRNA SYNTHETASE	coord: 1..66
None	No IPR available	PANTHER	PTHR33320	METHIONYL-TRNA SYNTHETASE	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G012665.1	ClCG08G012665.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity