ClCG08G003760 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G003760
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Enzymatic polyprotein
Location	CG_Chr08: 10365514 .. 10366500 (-)
RNA-Seq Expression	ClCG08G003760
Synteny	ClCG08G003760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCAAAAGCATTAGTTTCTTCTCCCAAAGGAAAGACAATGCTAAGCGAATCCAACCTTAATAAATCCTCAGTGAGCATTCCAAAGATGCTTTCTTGGGACACCTTGATAAAAAGGGAAAAGGAAGTCTCTCATATAATTGAACATCTAGACGGGAGAGTAGAAATTAAGTTTGAGGAGGAACCACCTAGATTCCCTGTAATCAAAGAAAACATGAATGCTAAAGAATTCACGAGTTCAAGACCAAGCACGTCCAACATAAGGATAGAAACCCATCCAAAACTTAATAGAACAAATTCTGTTAGGGTAAGCTCGATCAGACTAGAACACAGAGTCCCAAATCTTTAATACGAAGAAGAAAAACCATCTTCCCTTACTCAAACATAAATGGAAGTAGAATCCTCTTTCAGAAGCCAGTTAAATGTTATCATTTTAGATTTCAAATTAGATAAAGAAGCCTTGCAAAAAGAATTTATGTCAAAAGAACATAAACGAAACAAAATAGCATTTTTCAAAACTTATTTAGAAAGTGAAAGAAATGATTTAAAAGAAGAATTCTTCAGAACACTCGAAGTATTAGAAGAAAATATTTCCTTCTTTGAGTGGTTTAATCAGAGAAGAGAATTTAAAAATCTTTGTGTCCTCAAAGAAAAAGAAACTTGGAAAACAGTTCAAAGAGGAGAAATTCAACCTGAATTCCCTCCAATGGAAGACGTTGAATACAAAAGTTTCTATAATTTAATTATCTGAGCAAAACCATTCCAATTAATAAAAGAATCTGAAGAACATAAGCCTCCAACTAACAAAGAACTTAAAAACATACAACTTTAAAATAATTATTCAAACAAAATCCTTTCATTGATTGCAGAGCAAGTCTTTAGATTCGAAGAACTGCTCAACCCTCCAATCGAAAAATATGAAAATCCTATTTTCAGACCTCCAGCAAAGATAAAGTTAAATTCAAAAAAGATTCAGATGCTTTAA

mRNA sequence

ATGGAACCAAAAGCATTAGTTTCTTCTCCCAAAGGAAAGACAATGCTAAGCGAATCCAACCTTAATAAATCCTCAGTGAGCATTCCAAAGATGCTTTCTTGGGACACCTTGATAAAAAGGGAAAAGGAAGTCTCTCATATAATTGAACATCTAGACGGGAGAGTAGAAATTAAGTTTGAGGAGGAACCACCTAGATTCCCTGTAATCAAAGAAAACATGAATGCTAAAGAATTCACGAGTTCAAGACCAAGCACGTCCAACATAAGGATAGAAACCCATCCAAAACTTAATAGAACAAATTCTGTTAGGAGAAGAGAATTTAAAAATCTTTGTGTCCTCAAAGAAAAAGAAACTTGGAAAACAGTTCAAAGAGGAGAAATTCAACCTGAATTCCCTCCAATGGAAGACGTTGAATACAAAAAGCAAGTCTTTAGATTCGAAGAACTGCTCAACCCTCCAATCGAAAAATATGAAAATCCTATTTTCAGACCTCCAGCAAAGATAAAGTTAAATTCAAAAAAGATTCAGATGCTTTAA

Coding sequence (CDS)

ATGGAACCAAAAGCATTAGTTTCTTCTCCCAAAGGAAAGACAATGCTAAGCGAATCCAACCTTAATAAATCCTCAGTGAGCATTCCAAAGATGCTTTCTTGGGACACCTTGATAAAAAGGGAAAAGGAAGTCTCTCATATAATTGAACATCTAGACGGGAGAGTAGAAATTAAGTTTGAGGAGGAACCACCTAGATTCCCTGTAATCAAAGAAAACATGAATGCTAAAGAATTCACGAGTTCAAGACCAAGCACGTCCAACATAAGGATAGAAACCCATCCAAAACTTAATAGAACAAATTCTGTTAGGAGAAGAGAATTTAAAAATCTTTGTGTCCTCAAAGAAAAAGAAACTTGGAAAACAGTTCAAAGAGGAGAAATTCAACCTGAATTCCCTCCAATGGAAGACGTTGAATACAAAAAGCAAGTCTTTAGATTCGAAGAACTGCTCAACCCTCCAATCGAAAAATATGAAAATCCTATTTTCAGACCTCCAGCAAAGATAAAGTTAAATTCAAAAAAGATTCAGATGCTTTAA

Protein sequence

MEPKALVSSPKGKTMLSESNLNKSSVSIPKMLSWDTLIKREKEVSHIIEHLDGRVEIKFEEEPPRFPVIKENMNAKEFTSSRPSTSNIRIETHPKLNRTNSVRRREFKNLCVLKEKETWKTVQRGEIQPEFPPMEDVEYKKQVFRFEELLNPPIEKYENPIFRPPAKIKLNSKKIQML

Homology

[Close]

BLAST of ClCG08G003760 vs. NCBI nr
Match: KAA0057417.1 (Enzymatic polyprotein [Cucumis melo var. makuwa] >TYK30116.1 Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 7.1e-07
Identity = 51/119 (42.86%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 1   MEPKALVSSPKGKTMLSESNLNKSSVSIPKMLSWDTL--------------IKREKEVSH 60
           + PKAL  SPKG TML E N+ KSS++IP+ L WD L              IKR    + 
Sbjct: 130 LSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETTPIKRSSTEAS 189

Query: 61  IIEHLDGRVEIKFEEEPPRFPVIKENMNAKEFTSSRPSTSNIRIET--HPKLNRTNSVR 104
           IIE  DG VE++F      +P I E M      SSRPSTS+I+ ET     L R+ S+R
Sbjct: 190 IIEFPDGNVEVQF-NTGISYPRISEIM------SSRPSTSSIKTETSYRDTLRRSESIR 241

[Close]

BLAST of ClCG08G003760 vs. NCBI nr
Match: KAA0041674.1 (movement protein [Cucumis melo var. makuwa] >TYK06295.1 movement protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-06
Identity = 51/119 (42.86%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 1   MEPKALVSSPKGKTMLSESNLNKSSVSIPKMLSWDTL--------------IKREKEVSH 60
           + PKAL  SPKG TML E N+ KSS++IP+ L WD L              IKR    + 
Sbjct: 224 LSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETTPIKRSSTEAS 283

Query: 61  IIEHLDGRVEIKFEEEPPRFPVIKENMNAKEFTSSRPSTSNIRIETHPK--LNRTNSVR 104
           I E  DG VE++F      +P I E M      SSRPSTS+I+ ET  K  L R+ S+R
Sbjct: 284 ITEFPDGNVEVQF-NTGISYPRISEIM------SSRPSTSSIKTETSYKDTLRRSESIR 335

[Close]

BLAST of ClCG08G003760 vs. NCBI nr
Match: KAA0050445.1 (hypothetical protein E6C27_scaffold175G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 7.8e-06
Identity = 49/119 (41.18%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 1   MEPKALVSSPKGKTMLSESNLNKSSVSIPKMLSWDTL--------------IKREKEVSH 60
           + PKAL  SPKG TML E N+ KSS++IP+ L+WD L              IKR    + 
Sbjct: 130 LSPKALGVSPKGYTMLMEVNIEKSSMTIPRNLNWDELTKNPVWKLQGETAPIKRSSTEAS 189

Query: 61  IIEHLDGRVEIKFEEEPPRFPVIKENMNAKEFTSSRPSTSNIRIET--HPKLNRTNSVR 104
           I E  DG VE++F      +P I E M      SSRPST +I+ ET     L R+ S+R
Sbjct: 190 ITEFPDGNVEVQF-NTGISYPRISEIM------SSRPSTPSIKSETSYRDTLRRSESIR 241

[Close]

BLAST of ClCG08G003760 vs. NCBI nr
Match: TYK28080.1 (movement protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-05
Identity = 49/119 (41.18%), Postives = 62/119 (52.10%), Query Frame = 0


Query: 1   MEPKALVSSPKGKTMLSESNLNKSSVSIPKMLSWDTL--------------IKREKEVSH 60
           + PKA   SPKG TML E N+ KSS++IP+ L WD L              IKR    + 
Sbjct: 224 LSPKAPGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETTPIKRSSTEAS 283

Query: 61  IIEHLDGRVEIKFEEEPPRFPVIKENMNAKEFTSSRPSTSNIRIET--HPKLNRTNSVR 104
           I E  DG VE++F      +P I E M      SSRPSTS+I+ ET     L R+ S+R
Sbjct: 284 ITEFPDGNVEVQF-NTGISYPRISEIM------SSRPSTSSIKTETSYRDTLRRSESIR 335

[Close]

BLAST of ClCG08G003760 vs. NCBI nr
Match: KAA0032920.1 (movement protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-05
Identity = 49/119 (41.18%), Postives = 62/119 (52.10%), Query Frame = 0


Query: 1   MEPKALVSSPKGKTMLSESNLNKSSVSIPKMLSWDTL--------------IKREKEVSH 60
           + PKA   SPKG TML E N+ KSS++IP+ L WD L              IKR    + 
Sbjct: 224 LSPKAPGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETTPIKRSSTEAS 283

Query: 61  IIEHLDGRVEIKFEEEPPRFPVIKENMNAKEFTSSRPSTSNIRIET--HPKLNRTNSVR 104
           I E  DG VE++F      +P I E M      SSRPSTS+I+ ET     L R+ S+R
Sbjct: 284 ITEFPDGNVEVQF-NTGISYPRISEIM------SSRPSTSSIKTETSYRDTLRRSESIR 335

[Close]

BLAST of ClCG08G003760 vs. ExPASy TrEMBL
Match: A0A5A7URX9 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00980 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.4e-07
Identity = 51/119 (42.86%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 1   MEPKALVSSPKGKTMLSESNLNKSSVSIPKMLSWDTL--------------IKREKEVSH 60
           + PKAL  SPKG TML E N+ KSS++IP+ L WD L              IKR    + 
Sbjct: 130 LSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETTPIKRSSTEAS 189

Query: 61  IIEHLDGRVEIKFEEEPPRFPVIKENMNAKEFTSSRPSTSNIRIET--HPKLNRTNSVR 104
           IIE  DG VE++F      +P I E M      SSRPSTS+I+ ET     L R+ S+R
Sbjct: 190 IIEFPDGNVEVQF-NTGISYPRISEIM------SSRPSTSSIKTETSYRDTLRRSESIR 241

[Close]

BLAST of ClCG08G003760 vs. ExPASy TrEMBL
Match: A0A5D3C4I7 (Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold594G00050 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.8e-07
Identity = 51/119 (42.86%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 1   MEPKALVSSPKGKTMLSESNLNKSSVSIPKMLSWDTL--------------IKREKEVSH 60
           + PKAL  SPKG TML E N+ KSS++IP+ L WD L              IKR    + 
Sbjct: 224 LSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETTPIKRSSTEAS 283

Query: 61  IIEHLDGRVEIKFEEEPPRFPVIKENMNAKEFTSSRPSTSNIRIETHPK--LNRTNSVR 104
           I E  DG VE++F      +P I E M      SSRPSTS+I+ ET  K  L R+ S+R
Sbjct: 284 ITEFPDGNVEVQF-NTGISYPRISEIM------SSRPSTSSIKTETSYKDTLRRSESIR 335

[Close]

BLAST of ClCG08G003760 vs. ExPASy TrEMBL
Match: A0A5A7UA27 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00510 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.8e-06
Identity = 49/119 (41.18%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 1   MEPKALVSSPKGKTMLSESNLNKSSVSIPKMLSWDTL--------------IKREKEVSH 60
           + PKAL  SPKG TML E N+ KSS++IP+ L+WD L              IKR    + 
Sbjct: 130 LSPKALGVSPKGYTMLMEVNIEKSSMTIPRNLNWDELTKNPVWKLQGETAPIKRSSTEAS 189

Query: 61  IIEHLDGRVEIKFEEEPPRFPVIKENMNAKEFTSSRPSTSNIRIET--HPKLNRTNSVR 104
           I E  DG VE++F      +P I E M      SSRPST +I+ ET     L R+ S+R
Sbjct: 190 ITEFPDGNVEVQF-NTGISYPRISEIM------SSRPSTPSIKSETSYRDTLRRSESIR 241

[Close]

BLAST of ClCG08G003760 vs. ExPASy TrEMBL
Match: A0A5D3DXV6 (Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003440 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.4e-06
Identity = 49/119 (41.18%), Postives = 62/119 (52.10%), Query Frame = 0


Query: 1   MEPKALVSSPKGKTMLSESNLNKSSVSIPKMLSWDTL--------------IKREKEVSH 60
           + PKA   SPKG TML E N+ KSS++IP+ L WD L              IKR    + 
Sbjct: 224 LSPKAPGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETTPIKRSSTEAS 283

Query: 61  IIEHLDGRVEIKFEEEPPRFPVIKENMNAKEFTSSRPSTSNIRIET--HPKLNRTNSVR 104
           I E  DG VE++F      +P I E M      SSRPSTS+I+ ET     L R+ S+R
Sbjct: 284 ITEFPDGNVEVQF-NTGISYPRISEIM------SSRPSTSSIKTETSYRDTLRRSESIR 335

[Close]

BLAST of ClCG08G003760 vs. ExPASy TrEMBL
Match: A0A5A7SPT5 (Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001690 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.4e-06
Identity = 49/119 (41.18%), Postives = 62/119 (52.10%), Query Frame = 0


Query: 1   MEPKALVSSPKGKTMLSESNLNKSSVSIPKMLSWDTL--------------IKREKEVSH 60
           + PKA   SPKG TML E N+ KSS++IP+ L WD L              IKR    + 
Sbjct: 224 LSPKAPGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETTPIKRSSTEAS 283

Query: 61  IIEHLDGRVEIKFEEEPPRFPVIKENMNAKEFTSSRPSTSNIRIET--HPKLNRTNSVR 104
           I E  DG VE++F      +P I E M      SSRPSTS+I+ ET     L R+ S+R
Sbjct: 284 ITEFPDGNVEVQF-NTGISYPRISEIM------SSRPSTSSIKTETSYRDTLRRSESIR 335

The following BLAST results are available for this feature:

BLAST of ClCG08G003760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057417.1	7.1e-07	42.86	Enzymatic polyprotein [Cucumis melo var. makuwa] >TYK30116.1 Enzymatic polyprote...	[more]
KAA0041674.1	1.2e-06	42.86	movement protein [Cucumis melo var. makuwa] >TYK06295.1 movement protein [Cucumi...	[more]
KAA0050445.1	7.8e-06	41.18	hypothetical protein E6C27_scaffold175G00510 [Cucumis melo var. makuwa]	[more]
TYK28080.1	1.7e-05	41.18	movement protein [Cucumis melo var. makuwa]	[more]
KAA0032920.1	1.7e-05	41.18	movement protein [Cucumis melo var. makuwa]	[more]

BLAST of ClCG08G003760 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG08G003760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URX9	3.4e-07	42.86	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21...	[more]
A0A5D3C4I7	5.8e-07	42.86	Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold594G000...	[more]
A0A5A7UA27	3.8e-06	41.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DXV6	8.4e-06	41.18	Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003...	[more]
A0A5A7SPT5	8.4e-06	41.18	Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G0016...	[more]

BLAST of ClCG08G003760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G003760.1	ClCG08G003760.1	mRNA