ClCG08G003380 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G003380
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr08: 8781812 .. 8782042 (+)
RNA-Seq Expression	ClCG08G003380
Synteny	ClCG08G003380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGGATTGAATGAAAGAGGTGATTGTGGAGTTGGAGATAAGAAAAGGCTAACGACGACCAAAGCCATCTGCAACCGTTCAATTCATACTGATTTTCCATCATTGGGCGAAATTGAAGTTACCGATATCAATCAAGACAAGAATAGCCTAAGAATTTACAACAAGAAGAGGAAGAAGACGGCGAAGGAAGAAGAATCAAGGGACGGAAGCATACCAGGGATCTTATAG

mRNA sequence

ATGTATGGATTGAATGAAAGAGGTGATTGTGGAGTTGGAGATAAGAAAAGGCTAACGACGACCAAAGCCATCTGCAACCGTTCAATTCATACTGATTTTCCATCATTGGGCGAAATTGAAGTTACCGATATCAATCAAGACAAGAATAGCCTAAGAATTTACAACAAGAAGAGGAAGAAGACGGCGAAGGAAGAAGAATCAAGGGACGGAAGCATACCAGGGATCTTATAG

Coding sequence (CDS)

ATGTATGGATTGAATGAAAGAGGTGATTGTGGAGTTGGAGATAAGAAAAGGCTAACGACGACCAAAGCCATCTGCAACCGTTCAATTCATACTGATTTTCCATCATTGGGCGAAATTGAAGTTACCGATATCAATCAAGACAAGAATAGCCTAAGAATTTACAACAAGAAGAGGAAGAAGACGGCGAAGGAAGAAGAATCAAGGGACGGAAGCATACCAGGGATCTTATAG

Protein sequence

MYGLNERGDCGVGDKKRLTTTKAICNRSIHTDFPSLGEIEVTDINQDKNSLRIYNKKRKKTAKEEESRDGSIPGIL

Homology

[Close]

BLAST of ClCG08G003380 vs. NCBI nr
Match: KAE8646628.1 (hypothetical protein Csa_023588, partial [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 2.5e-09
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 8  GDCGVGDKKRLTTTKAICNRSIHTDFPSLGEIEVTDINQDKNSLRIYNKKRKKTAKEEES 67
          GD   GDKKRL   KAICN SI+ DFPSLG+ EV +INQDK SLRIY++K KK  +  ++
Sbjct: 6  GDGRGGDKKRLMMNKAICNLSIYIDFPSLGKTEVPNINQDKKSLRIYSQKSKKKNQGTKA 65

Query: 68 RDG 71
           +G
Sbjct: 66 YEG 68

[Close]

BLAST of ClCG08G003380 vs. ExPASy TrEMBL
Match: A0A0A0K8H8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G044010 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 11 GVGDKKRLTTTKAICNRSIHTDFPSLGEIEVTDINQDKNSLRIYNKKRKKTAKEEESRDG 70
          G GDKKRL   KAICN SI+ DFPSLG+ EV +INQDK SLRIY++K KK  +  ++ +G
Sbjct: 29 GGGDKKRLMMNKAICNLSIYIDFPSLGKTEVPNINQDKKSLRIYSQKSKKKNQGTKAYEG 88

The following BLAST results are available for this feature:

BLAST of ClCG08G003380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646628.1	2.5e-09	58.73	hypothetical protein Csa_023588, partial [Cucumis sativus]	[more]

BLAST of ClCG08G003380 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG08G003380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8H8	1.6e-09	60.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G044010 PE=4 SV=1	[more]

BLAST of ClCG08G003380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G003380.1	ClCG08G003380.1	mRNA