ClCG07G017170 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G017170
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	light-harvesting complex-like protein 3 isotype 1, chloroplastic
Location	CG_Chr07: 33684522 .. 33686462 (-)
RNA-Seq Expression	ClCG07G017170
Synteny	ClCG07G017170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATTGCTATCTCTGCCTCATTCCCAAGAGCATCCACTTCAAATCATCATGTTTCCATGAAGAAACAACATGCTCATCAAGCTAGACCTGCCTATTCCTCAACGACGAAAAACCCGACACCAAAGGTAATTAGTACTCTCGACGTCGGGGACTGTGATGGTTTCAATGCTACAGAACATCATGGAAATGTTGCATCAGCTAGGGACAAGCTAGAGGAAGATACTGATGTTTGGAACCATGGTAAAAGGTTCAAAGATAAGAGATGGAGAAATGGAACTTGGGATCTCAATATGTTTGTAAAGAATGGTAAGATGGATTGGGAAGGTGTCATCGTTGCAGGTGAGTGCATCATTTTCTCAAAGGGGATAATTTTAAGTTGAAAATTAGTTTTCGTCCTAAACTTTCACAATTTAGGGGCTATTTAGAATACGTGATTGGTAATTATAGTTGGGGTTATAGTATGTAGGTTATAATAGTTTGTATATTGGGAGCGGACTATTTTAGTCCGAGTTACAGATTATTACAAAATAGTAAACACAGTAAACAAATGAGAGTTTTAACATAATTTTACAGTAGCTAAGGGTGGGTTATAATCATTGGGAACTTCAACTATTATAACGAGAGACTCAAATATTGGGTAGACTATAATAACCAATTCCACTAAAGGTAAGTTTGGGGACCAAAATGTGCAAGTCTTTAGTAATTTAAAATTTATAATGACTTAGTTCGTATCGTGAAAATAATGGCTAAAATTTAAAAAGATATCTTATCGGTAAAGTGATTAGGTACTAAATGTGTTTAATTTAAAATATGTATAATGCCCTTTGACTCCAATATCCAAACATACAAATTTCCCCAAGTGTAAAGATTTAGGATAGTAAAATCTGTTCCTCTGCTGATTGAATGAAGTGCAATAATGGTATATTAATAACAAATTAAGTTATTCAATTTCATTATTGAAATTAGAAGTTTGGATTAACAATGTTAATTGTACAATAATGTAGAAGCAAAGAGGAGGAAGTTTCTTGAATTATATCCAGAACCAGCTACAGATCAAGAACCAGTGCTCTTTAGAAGCTCCATTATACCTTGGTGGACATGGCTCACCACCTCCTACCTCCCACAAGCCGAACTACTTAACGGTAGTCTATCGTGGTTTATCGCATATAGATAATGAAATTTTGCTATATATGTAAATATTTTGGTTCATTTTTCTATATTTGAAAATCGCTCTTATATATAAATGGTAAATAATTCTAAGGGAAATTGTTTTAAATGACAAAATTGTTGGAAATATTTTCAAATATAGCAAAATGTCACTGTTGATAGACATGATCTAGATAAGGATGGATGATAGTGTAAATAAGTTGACTCATTTTGCTATATTCGAAGACAATCCTAATTCTATTTTTTTTAATTTTATTTATTACAATTCAAATATTAAGAGGGGTTAAAGTTTTTTTTTTTCCAATAATCACGGGATATGGGAGTGAACCACGTTAAAAATTTTAAGGGAGTAATGAGTGTCTTATCCACTTAGCTATATATACTCGAATTGGGTATGGGCCATAAGAGGTAACGGTTTTGAACTCAAATGAAAAATATTAATATATGTTAAAGTAGGTAGTTGAGTTAGGTTAAATTGTGTTTGTTAATGATGGTTATATAATTAGTAGTAGTGTTTGTTTGTTGATGCAGGTAGGGCAGCCATGATAGGTTTTTTCATGGCCTATTTAGTGGATGCATTAACAGGAATTGGAATAGTTGGGCAAAGTGGGAATTTCATATGCAAAGCAGCTCTTTTTCTAACAGTCATTGGTGTGTTGCTGTTTAGGCAAACTCAAGACATTGAGGGCTTAAGAAACATAGCTGAAGAAGCTACCTTTTATGACAAGCAATGGCAAGCTTCATGGCAAAACCAAAATCATAAATAG

mRNA sequence

ATGGCTTCAATTGCTATCTCTGCCTCATTCCCAAGAGCATCCACTTCAAATCATCATGTTTCCATGAAGAAACAACATGCTCATCAAGCTAGACCTGCCTATTCCTCAACGACGAAAAACCCGACACCAAAGGTAATTAGTACTCTCGACGTCGGGGACTGTGATGGTTTCAATGCTACAGAACATCATGGAAATGTTGCATCAGCTAGGGACAAGCTAGAGGAAGATACTGATGTTTGGAACCATGGTAAAAGGTTCAAAGATAAGAGATGGAGAAATGGAACTTGGGATCTCAATATGTTTGTAAAGAATGGTAAGATGGATTGGGAAGGTGTCATCGTTGCAGAAGCAAAGAGGAGGAAGTTTCTTGAATTATATCCAGAACCAGCTACAGATCAAGAACCAGTGCTCTTTAGAAGCTCCATTATACCTTGGTGGACATGGCTCACCACCTCCTACCTCCCACAAGCCGAACTACTTAACGGTAGGGCAGCCATGATAGGTTTTTTCATGGCCTATTTAGTGGATGCATTAACAGGAATTGGAATAGTTGGGCAAAGTGGGAATTTCATATGCAAAGCAGCTCTTTTTCTAACAGTCATTGGTGTGTTGCTGTTTAGGCAAACTCAAGACATTGAGGGCTTAAGAAACATAGCTGAAGAAGCTACCTTTTATGACAAGCAATGGCAAGCTTCATGGCAAAACCAAAATCATAAATAG

Coding sequence (CDS)

ATGGCTTCAATTGCTATCTCTGCCTCATTCCCAAGAGCATCCACTTCAAATCATCATGTTTCCATGAAGAAACAACATGCTCATCAAGCTAGACCTGCCTATTCCTCAACGACGAAAAACCCGACACCAAAGGTAATTAGTACTCTCGACGTCGGGGACTGTGATGGTTTCAATGCTACAGAACATCATGGAAATGTTGCATCAGCTAGGGACAAGCTAGAGGAAGATACTGATGTTTGGAACCATGGTAAAAGGTTCAAAGATAAGAGATGGAGAAATGGAACTTGGGATCTCAATATGTTTGTAAAGAATGGTAAGATGGATTGGGAAGGTGTCATCGTTGCAGAAGCAAAGAGGAGGAAGTTTCTTGAATTATATCCAGAACCAGCTACAGATCAAGAACCAGTGCTCTTTAGAAGCTCCATTATACCTTGGTGGACATGGCTCACCACCTCCTACCTCCCACAAGCCGAACTACTTAACGGTAGGGCAGCCATGATAGGTTTTTTCATGGCCTATTTAGTGGATGCATTAACAGGAATTGGAATAGTTGGGCAAAGTGGGAATTTCATATGCAAAGCAGCTCTTTTTCTAACAGTCATTGGTGTGTTGCTGTTTAGGCAAACTCAAGACATTGAGGGCTTAAGAAACATAGCTGAAGAAGCTACCTTTTATGACAAGCAATGGCAAGCTTCATGGCAAAACCAAAATCATAAATAG

Protein sequence

MASIAISASFPRASTSNHHVSMKKQHAHQARPAYSSTTKNPTPKVISTLDVGDCDGFNATEHHGNVASARDKLEEDTDVWNHGKRFKDKRWRNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPEPATDQEPVLFRSSIIPWWTWLTTSYLPQAELLNGRAAMIGFFMAYLVDALTGIGIVGQSGNFICKAALFLTVIGVLLFRQTQDIEGLRNIAEEATFYDKQWQASWQNQNHK

Homology

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BLAST of ClCG07G017170 vs. NCBI nr
Match: XP_023551912.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399.8 bits (1026), Expect = 1.6e-107
Identity = 200/237 (84.39%), Postives = 213/237 (89.87%), Query Frame = 0


Query: 1   MASIAISASFPRASTSNHHVSMKKQHAHQARPAYSSTTKNPTPKVISTLDVGDCDGFNAT 60
           MASIAISASFPR+ TSN HVS  +QHA QARP +SS TKNPTP++I T DVGD D F+A 
Sbjct: 1   MASIAISASFPRSCTSN-HVSKNQQHARQARPTHSSMTKNPTPELIRTPDVGDRDAFDAP 60

Query: 61  EHHGNVASARDKLEEDTDVWNHGKRFKDKRWRNGTWDLNMFVKNGKMDWEGVIVAEAKRR 120
           + HGNVASA DKLEEDTD  NHGK F D+RW+NGTWDLNMFVKNGKMDWEGVIVAEAKRR
Sbjct: 61  KRHGNVASATDKLEEDTDDLNHGKTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRR 120

Query: 121 KFLELYPEPATDQEPVLFRSSIIPWWTWLTTSYLPQAELLNGRAAMIGFFMAYLVDALTG 180
           KFLELYPE AT+ EPVLFRSSIIPWW WLT SYLPQAELLNGRAAMIGFFMAYLVDALTG
Sbjct: 121 KFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYLVDALTG 180

Query: 181 IGIVGQSGNFICKAALFLTVIGVLLFRQTQDIEGLRNIAEEATFYDKQWQASWQNQN 238
           IGIVGQSGNFI K+ALF+TVIGVLLFRQTQDIEGLR +AEEATFYDKQWQASWQNQN
Sbjct: 181 IGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQNQN 236

[Close]

BLAST of ClCG07G017170 vs. NCBI nr
Match: XP_022984403.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 395.6 bits (1015), Expect = 3.1e-106
Identity = 201/238 (84.45%), Postives = 214/238 (89.92%), Query Frame = 0


Query: 1   MASIAISASFPRASTSNHHVSMKKQHAHQARPAYSSTTKNPTPKVISTLDVGDCD-GFNA 60
           MASIAISASF R+ TSN HVS K+QHA QARP YSS TKNPTP++I T DVG+ D  F+A
Sbjct: 47  MASIAISASFRRSCTSN-HVSKKQQHARQARPTYSSMTKNPTPELIRTPDVGNRDAAFDA 106

Query: 61  TEHHGNVASARDKLEEDTDVWNHGKRFKDKRWRNGTWDLNMFVKNGKMDWEGVIVAEAKR 120
            + HGNVASA DKLEEDTD  NHG+ F D+RW+NGTWDLNMFVKNGKMDWEGVIVAEAKR
Sbjct: 107 PKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 166

Query: 121 RKFLELYPEPATDQEPVLFRSSIIPWWTWLTTSYLPQAELLNGRAAMIGFFMAYLVDALT 180
           RKFLELYPE AT+QEPVLFRSSIIPWW WLT SYLPQAELLNGRAAMIGFFMAYLVDALT
Sbjct: 167 RKFLELYPETATNQEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALT 226

Query: 181 GIGIVGQSGNFICKAALFLTVIGVLLFRQTQDIEGLRNIAEEATFYDKQWQASWQNQN 238
           GIGIVGQSGNFI KAALF+TVIGVLLFRQTQDIEGLR +AEEATFYDKQWQASWQNQN
Sbjct: 227 GIGIVGQSGNFISKAALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQNQN 283

[Close]

BLAST of ClCG07G017170 vs. NCBI nr
Match: XP_022922577.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 386.7 bits (992), Expect = 1.4e-103
Identity = 195/237 (82.28%), Postives = 207/237 (87.34%), Query Frame = 0


Query: 1   MASIAISASFPRASTSNHHVSMKKQHAHQARPAYSSTTKNPTPKVISTLDVGDCDGFNAT 60
           MASIAISASFPR+ TSNH     KQ   QARP YSS TKNPTP++I T  VGD D  +A 
Sbjct: 1   MASIAISASFPRSCTSNH--VSNKQQRRQARPTYSSMTKNPTPELIKTPYVGDRDALDAP 60

Query: 61  EHHGNVASARDKLEEDTDVWNHGKRFKDKRWRNGTWDLNMFVKNGKMDWEGVIVAEAKRR 120
           + HGNVASA DKLEEDTD  NHG+ F D+RW+NGTWDLNMFVKNGKMDWEGVIVAEAKRR
Sbjct: 61  KRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRR 120

Query: 121 KFLELYPEPATDQEPVLFRSSIIPWWTWLTTSYLPQAELLNGRAAMIGFFMAYLVDALTG 180
           KFLELYPE AT+ EPVLFRSSIIPWW WLT SYLPQAELLNGRAAMIGFFMAYLVDALTG
Sbjct: 121 KFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTG 180

Query: 181 IGIVGQSGNFICKAALFLTVIGVLLFRQTQDIEGLRNIAEEATFYDKQWQASWQNQN 238
           IGIVGQSGNFI KAALF+TVIGVLLFRQT+DIEGLR +AEEATFYDKQWQASWQNQN
Sbjct: 181 IGIVGQSGNFISKAALFVTVIGVLLFRQTKDIEGLRKLAEEATFYDKQWQASWQNQN 235

[Close]

BLAST of ClCG07G017170 vs. NCBI nr
Match: XP_038875279.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 382.5 bits (981), Expect = 2.7e-102
Identity = 193/237 (81.43%), Postives = 203/237 (85.65%), Query Frame = 0


Query: 1   MASIAISASFPRASTSNHHVSMKKQHAHQARPAYSSTTKNPTPKVISTLDVGDCDGFNAT 60
           MASIAISAS PRASTSN HV +K               KNPT KVISTLDVGD DG  A 
Sbjct: 1   MASIAISASLPRASTSN-HVFVK---------------KNPTQKVISTLDVGDRDGVGAV 60

Query: 61  EHHGNVASARDKLEEDTDVWNHGKRFKDKRWRNGTWDLNMFVKNGKMDWEGVIVAEAKRR 120
           E HGNVASAR+K+EED D WNHG++F DKRW+NGTWDLNMFVKNGKMDWEGVIVAEAKRR
Sbjct: 61  ERHGNVASAREKVEEDNDDWNHGEKFTDKRWKNGTWDLNMFVKNGKMDWEGVIVAEAKRR 120

Query: 121 KFLELYPEPATDQEPVLFRSSIIPWWTWLTTSYLPQAELLNGRAAMIGFFMAYLVDALTG 180
           KFLELYPE AT+QEPVLFRSS+IPWW WLT SYLPQAELLNGRAAMIGFFMAY+VDALTG
Sbjct: 121 KFLELYPEAATNQEPVLFRSSVIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYIVDALTG 180

Query: 181 IGIVGQSGNFICKAALFLTVIGVLLFRQTQDIEGLRNIAEEATFYDKQWQASWQNQN 238
           IGIVGQSGNFICKAALF TVIGVLLFRQT+DIE LRNIAEEAT YDKQWQ SWQNQN
Sbjct: 181 IGIVGQSGNFICKAALFFTVIGVLLFRQTEDIESLRNIAEEATLYDKQWQTSWQNQN 221

[Close]

BLAST of ClCG07G017170 vs. NCBI nr
Match: XP_008453842.1 (PREDICTED: uncharacterized protein LOC103494445 [Cucumis melo] >KAA0044687.1 Chlorophyll A-B binding protein [Cucumis melo var. makuwa] >TYK16897.1 Chlorophyll A-B binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 371.3 bits (952), Expect = 6.2e-99
Identity = 195/243 (80.25%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MASIAISASFPRASTSNHHVSMKK--QHAHQARPAYSSTTKNPTPKVISTLDVGDCDGFN 60
           MASIAISAS PRA+  N HVSMKK  QHAH A+PAYSS TKNPTPKVISTLDVG+ D   
Sbjct: 1   MASIAISASLPRAANPN-HVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGA 60

Query: 61  ATE---HHGNVA-SARDKLEEDTDVW-NHGKRFKDKRWRNGTWDLNMFVKNGKMDWEGVI 120
           A +   H GNVA SA  K+EED D W N+G+RF DKRW+NGTWDLNMFVKNGKMDWEGVI
Sbjct: 61  AQQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVI 120

Query: 121 VAEAKRRKFLELYPEPATDQEPVLFRSSIIPWWTWLTTSYLPQAELLNGRAAMIGFFMAY 180
           V EAKRRKFLEL+PE AT++EPVLFRSSIIPWW WLT SYLPQAELLNGRAAMIGFFM Y
Sbjct: 121 VEEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 180

Query: 181 LVDALTGIGIVGQSGNFICKAALFLTVIGVLLFRQTQDIEGLRNIAEEATFYDKQWQASW 237
            VDALTGIGIVGQSGNFICK ALFLTVIGVLLFRQ++D+E LRNIAEEATFYDKQWQ+SW
Sbjct: 181 GVDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSW 240

[Close]

BLAST of ClCG07G017170 vs. ExPASy Swiss-Prot
Match: Q9SYX1 (Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.1 PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.7e-54
Identity = 95/153 (62.09%), Postives = 120/153 (78.43%), Query Frame = 0


Query: 85  RFKDKRWRNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPEPATDQEPVLFRSSIIP 144
           +F+D RW NGTWDL  F K+GK DW+ VIVAEAKRRK+LE  PE  ++ EPVLF +SIIP
Sbjct: 101 KFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIP 160

Query: 145 WWTWLTTSYLPQAELLNGRAAMIGFFMAYLVDALTGIGIVGQSGNFICKAALFLTVIGVL 204
           WW W+   +LP+AELLNGRAAMIGFFMAY VD+LTG+G+V Q GNF CK  LF+ V GVL
Sbjct: 161 WWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 220

Query: 205 LFRQTQDIEGLRNIAEEATFYDKQWQASWQNQN 238
             R+ +D++ L+N+ +E T YDKQWQA+W+N +
Sbjct: 221 FIRKNEDVDKLKNLFDETTLYDKQWQAAWKNDD 253

[Close]

BLAST of ClCG07G017170 vs. ExPASy Swiss-Prot
Match: Q6NKS4 (Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.2 PE=1 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 5.5e-50
Identity = 87/150 (58.00%), Postives = 117/150 (78.00%), Query Frame = 0


Query: 85  RFKDKRWRNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPEPATDQEPVLFRSSIIP 144
           ++++ +W NGTWDL  F K+GK DW+ VIV+EAKRRK+LE  PE  ++ E V+F +SIIP
Sbjct: 98  KYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIP 157

Query: 145 WWTWLTTSYLPQAELLNGRAAMIGFFMAYLVDALTGIGIVGQSGNFICKAALFLTVIGVL 204
           WW W+   +LP+AELLNGRAAMIGFFMAY VD+LTG+G+V Q GNF CK  LF+ V GVL
Sbjct: 158 WWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 217

Query: 205 LFRQTQDIEGLRNIAEEATFYDKQWQASWQ 235
             R+ +D++ L+++ +E T YDKQWQA+W+
Sbjct: 218 FIRKNEDLDKLKDLFDETTLYDKQWQAAWK 247

[Close]

BLAST of ClCG07G017170 vs. ExPASy TrEMBL
Match: A0A6J1JAE2 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482711 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.5e-106
Identity = 201/238 (84.45%), Postives = 214/238 (89.92%), Query Frame = 0


Query: 1   MASIAISASFPRASTSNHHVSMKKQHAHQARPAYSSTTKNPTPKVISTLDVGDCD-GFNA 60
           MASIAISASF R+ TSN HVS K+QHA QARP YSS TKNPTP++I T DVG+ D  F+A
Sbjct: 47  MASIAISASFRRSCTSN-HVSKKQQHARQARPTYSSMTKNPTPELIRTPDVGNRDAAFDA 106

Query: 61  TEHHGNVASARDKLEEDTDVWNHGKRFKDKRWRNGTWDLNMFVKNGKMDWEGVIVAEAKR 120
            + HGNVASA DKLEEDTD  NHG+ F D+RW+NGTWDLNMFVKNGKMDWEGVIVAEAKR
Sbjct: 107 PKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 166

Query: 121 RKFLELYPEPATDQEPVLFRSSIIPWWTWLTTSYLPQAELLNGRAAMIGFFMAYLVDALT 180
           RKFLELYPE AT+QEPVLFRSSIIPWW WLT SYLPQAELLNGRAAMIGFFMAYLVDALT
Sbjct: 167 RKFLELYPETATNQEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALT 226

Query: 181 GIGIVGQSGNFICKAALFLTVIGVLLFRQTQDIEGLRNIAEEATFYDKQWQASWQNQN 238
           GIGIVGQSGNFI KAALF+TVIGVLLFRQTQDIEGLR +AEEATFYDKQWQASWQNQN
Sbjct: 227 GIGIVGQSGNFISKAALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQNQN 283

[Close]

BLAST of ClCG07G017170 vs. ExPASy TrEMBL
Match: A0A6J1E3P1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430544 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 6.9e-104
Identity = 195/237 (82.28%), Postives = 207/237 (87.34%), Query Frame = 0


Query: 1   MASIAISASFPRASTSNHHVSMKKQHAHQARPAYSSTTKNPTPKVISTLDVGDCDGFNAT 60
           MASIAISASFPR+ TSNH     KQ   QARP YSS TKNPTP++I T  VGD D  +A 
Sbjct: 1   MASIAISASFPRSCTSNH--VSNKQQRRQARPTYSSMTKNPTPELIKTPYVGDRDALDAP 60

Query: 61  EHHGNVASARDKLEEDTDVWNHGKRFKDKRWRNGTWDLNMFVKNGKMDWEGVIVAEAKRR 120
           + HGNVASA DKLEEDTD  NHG+ F D+RW+NGTWDLNMFVKNGKMDWEGVIVAEAKRR
Sbjct: 61  KRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRR 120

Query: 121 KFLELYPEPATDQEPVLFRSSIIPWWTWLTTSYLPQAELLNGRAAMIGFFMAYLVDALTG 180
           KFLELYPE AT+ EPVLFRSSIIPWW WLT SYLPQAELLNGRAAMIGFFMAYLVDALTG
Sbjct: 121 KFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTG 180

Query: 181 IGIVGQSGNFICKAALFLTVIGVLLFRQTQDIEGLRNIAEEATFYDKQWQASWQNQN 238
           IGIVGQSGNFI KAALF+TVIGVLLFRQT+DIEGLR +AEEATFYDKQWQASWQNQN
Sbjct: 181 IGIVGQSGNFISKAALFVTVIGVLLFRQTKDIEGLRKLAEEATFYDKQWQASWQNQN 235

[Close]

BLAST of ClCG07G017170 vs. ExPASy TrEMBL
Match: A0A5D3CYT8 (Chlorophyll A-B binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00310 PE=4 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 3.0e-99
Identity = 195/243 (80.25%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MASIAISASFPRASTSNHHVSMKK--QHAHQARPAYSSTTKNPTPKVISTLDVGDCDGFN 60
           MASIAISAS PRA+  N HVSMKK  QHAH A+PAYSS TKNPTPKVISTLDVG+ D   
Sbjct: 1   MASIAISASLPRAANPN-HVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGA 60

Query: 61  ATE---HHGNVA-SARDKLEEDTDVW-NHGKRFKDKRWRNGTWDLNMFVKNGKMDWEGVI 120
           A +   H GNVA SA  K+EED D W N+G+RF DKRW+NGTWDLNMFVKNGKMDWEGVI
Sbjct: 61  AQQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVI 120

Query: 121 VAEAKRRKFLELYPEPATDQEPVLFRSSIIPWWTWLTTSYLPQAELLNGRAAMIGFFMAY 180
           V EAKRRKFLEL+PE AT++EPVLFRSSIIPWW WLT SYLPQAELLNGRAAMIGFFM Y
Sbjct: 121 VEEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 180

Query: 181 LVDALTGIGIVGQSGNFICKAALFLTVIGVLLFRQTQDIEGLRNIAEEATFYDKQWQASW 237
            VDALTGIGIVGQSGNFICK ALFLTVIGVLLFRQ++D+E LRNIAEEATFYDKQWQ+SW
Sbjct: 181 GVDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSW 240

[Close]

BLAST of ClCG07G017170 vs. ExPASy TrEMBL
Match: A0A1S3BXB8 (uncharacterized protein LOC103494445 OS=Cucumis melo OX=3656 GN=LOC103494445 PE=4 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 3.0e-99
Identity = 195/243 (80.25%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MASIAISASFPRASTSNHHVSMKK--QHAHQARPAYSSTTKNPTPKVISTLDVGDCDGFN 60
           MASIAISAS PRA+  N HVSMKK  QHAH A+PAYSS TKNPTPKVISTLDVG+ D   
Sbjct: 1   MASIAISASLPRAANPN-HVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGA 60

Query: 61  ATE---HHGNVA-SARDKLEEDTDVW-NHGKRFKDKRWRNGTWDLNMFVKNGKMDWEGVI 120
           A +   H GNVA SA  K+EED D W N+G+RF DKRW+NGTWDLNMFVKNGKMDWEGVI
Sbjct: 61  AQQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVI 120

Query: 121 VAEAKRRKFLELYPEPATDQEPVLFRSSIIPWWTWLTTSYLPQAELLNGRAAMIGFFMAY 180
           V EAKRRKFLEL+PE AT++EPVLFRSSIIPWW WLT SYLPQAELLNGRAAMIGFFM Y
Sbjct: 121 VEEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 180

Query: 181 LVDALTGIGIVGQSGNFICKAALFLTVIGVLLFRQTQDIEGLRNIAEEATFYDKQWQASW 237
            VDALTGIGIVGQSGNFICK ALFLTVIGVLLFRQ++D+E LRNIAEEATFYDKQWQ+SW
Sbjct: 181 GVDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSW 240

[Close]

BLAST of ClCG07G017170 vs. ExPASy TrEMBL
Match: A0A0A0KUF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025130 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.4e-96
Identity = 186/237 (78.48%), Postives = 202/237 (85.23%), Query Frame = 0


Query: 1   MASIAISASFPRASTSNHHVSMKKQHAHQARPAYSSTTKNPTPKVISTLDVGDCDGFNAT 60
           MASIAISAS PRAS SNH    KKQ  H A+P YSSTTKNPTPKVISTLDV + D   A 
Sbjct: 1   MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAAQ 60

Query: 61  EH-HGNVASARDKLEED-TDVW-NHGKRFKDKRWRNGTWDLNMFVKNGKMDWEGVIVAEA 120
           ++  GN ASA  K EED  D W N+G+RF DKRW+NGTWDLNMFV+NGKMDWEGVIV EA
Sbjct: 61  QYRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA 120

Query: 121 KRRKFLELYPEPATDQEPVLFRSSIIPWWTWLTTSYLPQAELLNGRAAMIGFFMAYLVDA 180
           KRRKFLE++PE AT+QEPV+FRSSIIPWW WLT SYLPQAELLNGRAAMIGFFM Y VDA
Sbjct: 121 KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA 180

Query: 181 LTGIGIVGQSGNFICKAALFLTVIGVLLFRQTQDIEGLRNIAEEATFYDKQWQASWQ 235
           LTG+GIVGQSGNFICK ALFLTVIGVLLFRQ++DIE LRNIAEEATFYDKQWQ+SWQ
Sbjct: 181 LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 237

[Close]

BLAST of ClCG07G017170 vs. TAIR 10
Match: AT4G17600.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-55
Identity = 95/153 (62.09%), Postives = 120/153 (78.43%), Query Frame = 0


Query: 85  RFKDKRWRNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPEPATDQEPVLFRSSIIP 144
           +F+D RW NGTWDL  F K+GK DW+ VIVAEAKRRK+LE  PE  ++ EPVLF +SIIP
Sbjct: 101 KFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIP 160

Query: 145 WWTWLTTSYLPQAELLNGRAAMIGFFMAYLVDALTGIGIVGQSGNFICKAALFLTVIGVL 204
           WW W+   +LP+AELLNGRAAMIGFFMAY VD+LTG+G+V Q GNF CK  LF+ V GVL
Sbjct: 161 WWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 220

Query: 205 LFRQTQDIEGLRNIAEEATFYDKQWQASWQNQN 238
             R+ +D++ L+N+ +E T YDKQWQA+W+N +
Sbjct: 221 FIRKNEDVDKLKNLFDETTLYDKQWQAAWKNDD 253

[Close]

BLAST of ClCG07G017170 vs. TAIR 10
Match: AT5G47110.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 199.1 bits (505), Expect = 3.9e-51
Identity = 87/150 (58.00%), Postives = 117/150 (78.00%), Query Frame = 0


Query: 85  RFKDKRWRNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPEPATDQEPVLFRSSIIP 144
           ++++ +W NGTWDL  F K+GK DW+ VIV+EAKRRK+LE  PE  ++ E V+F +SIIP
Sbjct: 98  KYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIP 157

Query: 145 WWTWLTTSYLPQAELLNGRAAMIGFFMAYLVDALTGIGIVGQSGNFICKAALFLTVIGVL 204
           WW W+   +LP+AELLNGRAAMIGFFMAY VD+LTG+G+V Q GNF CK  LF+ V GVL
Sbjct: 158 WWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 217

Query: 205 LFRQTQDIEGLRNIAEEATFYDKQWQASWQ 235
             R+ +D++ L+++ +E T YDKQWQA+W+
Sbjct: 218 FIRKNEDLDKLKDLFDETTLYDKQWQAAWK 247

The following BLAST results are available for this feature:

BLAST of ClCG07G017170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023551912.1	1.6e-107	84.39	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo...	[more]
XP_022984403.1	3.1e-106	84.45	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxi...	[more]
XP_022922577.1	1.4e-103	82.28	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita mosc...	[more]
XP_038875279.1	2.7e-102	81.43	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hisp...	[more]
XP_008453842.1	6.2e-99	80.25	PREDICTED: uncharacterized protein LOC103494445 [Cucumis melo] >KAA0044687.1 Chl...	[more]

BLAST of ClCG07G017170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYX1	1.7e-54	62.09	Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis ...	[more]
Q6NKS4	5.5e-50	58.00	Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis ...	[more]

BLAST of ClCG07G017170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JAE2	1.5e-106	84.45	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita ma...	[more]
A0A6J1E3P1	6.9e-104	82.28	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita mo...	[more]
A0A5D3CYT8	3.0e-99	80.25	Chlorophyll A-B binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BXB8	3.0e-99	80.25	uncharacterized protein LOC103494445 OS=Cucumis melo OX=3656 GN=LOC103494445 PE=...	[more]
A0A0A0KUF5	2.4e-96	78.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025130 PE=4 SV=1	[more]

BLAST of ClCG07G017170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17600.1	1.2e-55	62.09	Chlorophyll A-B binding family protein	[more]
AT5G47110.1	3.9e-51	58.00	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR14154:SF56	FACTOR, PUTATIVE-RELATED	coord: 14..237
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 14..237
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 137..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G017170.1	ClCG07G017170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005634	nucleus