ClCG07G013950 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G013950
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	50S ribosomal protein L34
Location	CG_Chr07: 30467257 .. 30474517 (-)
RNA-Seq Expression	ClCG07G013950
Synteny	ClCG07G013950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGCGTTCATTCTCCCCACCCCTCTTCTTTGCCTTCGATTTCTCCTTCTCCCACCTTTGCACAGCCGCACACCGCCGCTAACCCACCGGAAATTTTCTTTCTTTTCCCATCGCTCCCCTGCGGCAGCCACACCAACCTTACATTTTGCCGCACACTGTCACCAACCTCACTGCCACGCCCATCTTTGCTTTCTAAGGGTTAGTGAGCTCGTTCTTTTGCTCATGGCGTCCAAACTTCTGATTCGGACGGGAACCTCTTTGATAAATCGATTGCGATTAAGTTCAGCGCATCAGAATAACAGGATTTGGAGTAACCAAGCTCTGTCCCATGGCCATGGCGTTGAAGTCACTCCGATGCTTTTTCCTTCAGTCTCTAAGCACCAGACTGCTCGTCATTTGCAGCAGAATGACAACGAATCGTTGAGGAAGCTCGAATCGGAGGGCATTTTCTTTCCTTTTGGGCTTCCGTCGCTCCGGTTCTTCTTGCCCGATGGTATGCTATTTTTTTTTTCTTGCTCTGCTTGGACTGATATTAAACGTTAATTCATAACGTATGTGGATTCTGTTGCGTTTTAATTTTCCGTAGGAGTTTAAAAGTAGCTAATTTTTCACCATACATCTTTTTGTGGTAGTTTCTAATTTACATTAACTGCCTTATATAATCATAAGTTTGGAGTCTTAAGTGAAAGTGGGATTGTCAAGTGTTTCTGAATTGCATGACAGTTTGCCTCTCTTGAGGTTAAGAGAAACTTTAGGGTGCGAAAACTATTAGCCAGTCACTCAAGCTTCAGAGATGACTGCTCTATTAGTCTTGAGAACCTTGTCGGCAGTGAAGATACTTGCCTGCCAGCGTCTACCCTTCACTGTAATAATGCTGAGGGTGTCTATCTACTTATTCTGTAAGGAACTGACTTTGGTTCTGGAAAATATCATGTGAACCATGCTTGTCAGTTGAAAGTATGATATGGCAGCTCGATTTCTCGTATTTCTGGGTTATTTATTATTTTTTTGCCTTTCTTTTTGGGTTTTGCATGGGACTATGGGAGGATTAACACTGCCCATTCCATCTAGAGGCCTTACTCCATGGTCTTGGGCTCTAAGTGGTGTGTTATGTGCATCGGGTTCCATTTTCATTGTTTGATGGGGAAACGACAGAGGTCATACATTCCTTTCTTTAATCGGGGAGTTCAAGCATAGACTAGGGAGAACGGAAATTCGTTTATGGAGCCCCAACCTTTATGAGGGCTTTTCTTGTAGCTCCTTTCTTCGCTGCTTGTTGAACTCTTATCTTTTTAAAGAGTTTTCTTTTTGTTCTTTGGAAGGTGAACATCCCAAAAAAGGTGAAGTTCTTTGATTGACAGGTTATTCATGGAAGAATCGATAATCTTGATAGGCTCTCGAGGAAGACGCCTATGGTGGATGGTTTGTTTTGCTGAATATTTTGTTGAAGGCTGTTGGAGGACCTAGATCATTTACGTTGGCATTGTGATTATGCTTGGTTTCTATGGAATTACTTTGGTGTGTTTGGCCTTTAGCTTGCCCTACATAGAGTCTTTAGCGATATGATTGAGGAGTTCCTCCTCCATCTCCGTTTCAGTAGAAGGGGAGATTTTTATGGCAAGCCAAGGTTTGTTCTGTATTATAGGGACTTCGGGGAGAGAAACAATAGAATCTTCAAAAGGGTTGATGGAGAGTCTTTTGATATTTGGCCCTTGTGAGATTCCATGTTTCTCTTGAGGTGTTGGTGTCAAGCTCTTTTTGTAATTATTTGTGAGGAGTTATTTTGCTTGATTGGAGCCCCTTTTTGTAAGGTTGTGTTAGGATACCACCTAACAAGGAAACATTCATGAACAACACAGAAAACTCCAAGTACACTCAAATATGGAAATATAGGAAAATATGTTGTAATATTATAAGAAAGGTAACAAGATGATCTAGCCTTTTGAGAGGGTTAGTCTCTCCCAAATTCTCAAAGGAAATCTCACAAAATTCTTCGCACCTTATTCCAAACCCACTCCTTCTATTTATAACTAAAAGCTTTAACAATCTTACTACCTATTTACTAATTTTACCCTTCTAATAACCATACTAATATTCTATTAATAATCCTTTTGGGTTTTCACAGGTTGCTCCCTTTCGTGGGGTTTTATTATTATTATATTTTTAATGCCCTTACATTCTTTCATTCTTTTTCATTTTATCCAAAAGGAGGAAAAAAAAAGGTGATGTGTTCTATAAATATGCTTTAGAGAGTTTGGACCATGTACTTTGGAGCCATAACTTTGCCACCTTGATTTGGGGTGTTTTTCTGGAGAACTTAGGTGTTCCCTCAGCTAAATAGTGAGGAGTTTTGTACATAATAAGGTGAGGAGCTTTGTGGAAAACAGTCTTTCTTGCTATTTTGTGGTATATCTAACCTTGAGAGAAATTGGATGATCTTTATCCACACCTCAAGGACAAGGTGTGTTTTGTGGCGGGTTGATGATAGGATTAGGAAGTAGATAAAATATGGTAATTAGGAGGGTGGTACGTTGGGTGTTTCTTGGGGAGATCTAGCAACAAGAGAAGGTAGGCAAAATGTGGGAGTACTAGTTAGGGGTATATGGGTAAGATTAGTGTGGTATTAATAAGGGCTTAAGGGTAATTAAGGACCTTAGGGGGTGTGAGAATTTGGGTAGTGTCCTTTGTAGGACTTTGGGAGAAAGAGCCCTCTCAATAATTTCTTTACCAATATTACAATATGGGTATCTTTAGTGTTTTCTTGTATTTTTTGTGTCCGGCTACCTAACAAATTGGTATTAGAGCACGTTTCTTCTAGTTGCCTTCATTTTGACTATGGATTTGGATATGGAAGTGCCGATTGTGTGTTAAATAGGTTGTTGGAGGTACAAAGGAAGTTGGATCCAATACAAAAAGAGTTTAAGGATTTCAATGAACGATGCATGAAAGTGAGAGAAAGAGAACAAGAACGATTGACAACAATCGAGGCTGTGAAAGAAAATGAGAGTTTCCCTATTTCATTCACTCATTGAAATGTTTCTTTATTCAAGAAAAGAAAGAAAATGAAATCAAGGAAAAATCGATTGGATCAAAGATCAACCACAACCTTGTTTAGAAACTATCAAATTGTAAGTGCAATCGAATTTTGGCTGGAAGGTGTCGATCTTAGCTGAGGACACCTTCGAAAACGTGAGGGAAAACCAATCAAAGAGGCAAAAGAGAAGGAAGGAAAGAGGAATTGTTGGTGTAGACAGAGTCAAAAAGCAACAATGCGAGAGGAGGAAGAACCTACTGATGAACTAGTGGTCGGAGAGGCTAGGTAGCGTGTAGACGAAGGAACATTGGAGGAATAACCATTTGGTGGTCAAATGGTCAGTAGGGGAAAGCGACGTTGTGAGTTTCATGAAGAGAGGGTGAAGAGATTGGATAGGGACAACCATGAAGGAACCATCGAAGGAGATCACTACTGGCGACAAGTGTGGGTGTGTCCAAAGAAAAGGTCCCTAAGAAGACGGTGAGGCAAGATTCGTTTGCTAGCAAGTATCCATGGTGATAGGTTAGAAACTGAAGAAAAGAAAAGTCAGGAAGTTGGGGTTGGGTTGAAAAACTCTATCTCTATTCGGGTGACAACAAATTGTGTTGGAAAGGGATGGGGCTGTTGACTTCTTAATTATGGGCTGGGTAAGTTATGCTTCAATGGGCTGGATTTTAACCATGGAGATGAGGCCCATTCTCTTGCAAAGTCAGAAAACAAGATTGTTTTACAACATGGGTTTCCATTCAGGTTGTTCTTTGTTTTAAACCCAAGACCCACCCGTTATGGAAATACCGTTCTCATGAGAAGTAACTAATCCTAAACCGCACAGTGTTTTGCTCTTCATCCATGCTGCCAACCATTACAACTGGGCAAACAAACGCCAGTGACCATTGACACCATTTGCCACCGCCTGCACCTCCACCACTCGCCACCATCCGCCGCTCTTGATCGTTACAGTGCTGACCAACAATTTTCAGTTTCAGCTTCTGATGGGTATTAGATTACGTGATTTTGTTGTAAAAGAAATTTTCAGTTCGGCTTCTGATGGGTATTGGATTATGTGATTTTGTTGTAAAAAAAAGGTATTATTTGATTGTCACCCAATTTTGTGATCGTGTTTTGATAAGCACACTTTGAGCACAAGGTCTTTTCTGAAGGGTGGGGTAGTGTGGCAATACTAGTTAGGGGTATATGGGTAAGATTAGTATGATATTAGTAAGGGTTTAAGGGTAATTAGCAAGCGGTGCTTGGTTATAAATAGAGGTGTTAAGGACCTTAGGGGGTGAAAAATTTGGGTAGTGCCCTTAGTGGAACTTTGAGAGAAATATCCCTCTCAAGAGGCTATTATATTGTAATTTCTTTAGTGATATTGCAATATAGTTATCCTTAGTGTTCTTTTGTATTTTTTGCATCCGAGTTCCTAACACAGTGTTGTGATAGTTTAACTCTCATTTTCAGCCTTTTTGAGAGAGATCTCTCTTTAGCTTTCTCGATGGGTGTGCACTGCAAGTTGAGCATCTGAATAAAGAAAAACTTGTTTTAAGTAGTTTGTAAATATTTTGACCTTCCTGCATGGCTGTCCGAGTTATGATATATGGATTCCCTTCATTAAATTAAGCTTTGTAGATAACAATTCATTAAACTATCATCTCATTTTCAGATGATAGTTTAACCTGTCATTGCTTCTTTGTATTGTTATTTTTATCAAGGCACAATTTTTTTTTCTTTCTGCAGGAGATGCTTCTTCGACTCAAGAACCATTGCTCTTATTTCCTAAAAGGACTTTTCAACCTAGCATCATCAGGCGAAAAAGGAATCATGGATTTTTTGCCCGGTATCTCCATTGCCTTTTCTTCTTTTATGTAATGTTTTTAAAAGGAGAATTTATAATTTGCAAACAATGCTATTCTTTGCTTAAACATGCTCGGTAGAGGTTCAGGAAGAAACATGAGGAATCAATGAAATGAAAAAAGGATCCAAAACACTCCCGATCACCAATAGGTATAGAGGTATAGGTGGATTACAAGAATGATCGCCCATTTGAGATTAAAGAAGAAAGGCTAAGCACTTAAGGGATGTTTACATTTAGACCAATAAAGAAAGAGTATTAGAAGTAATCAAATCCACAACACTATAGAAGATGGAGTGATGATCATTGAAACCTCACTCATTCCTCTCACACCAGAAAATTCAAAAGAACATTTAGTTGAAAGTAAGCCAAAGGGTCTTCCTTTCTAAAAGGGTATCCCGCAAAAACACAAGCCAAAGAATTGAAAATAGTTACAGGCATGGCCAAATTCCACCCAGAAGCTTCTGACATAAAATTCCAATAGGGAAGTGCAAAAGGGAAACAACCAAAAAGATGCGCTAGAGATTTGGCATTCGTGTTACACATAACCCACCAAGAGGAAGAAAGAGAGAAATGAGGCATCCTTCTTTGAAGACGGTCTGCCATATTGTTCTCTACTACGACAGTTCTCATAGAAAAATTTTAATTTTCTGAGCATAAGGGTCTTTCTATATGTTCAAATAAAGATTTATTTATTTATTTTTATTTGTTGAAACATAAAAATTGTTGATGAGCTATTGACATGTACTAAATTTTCCATTAAGGAACTAATGGAATACTTCTTTGGGAGTATAAGAGGCCAACACCAAAAATCACTCATTTTAGTTAGATTGATGGTAGGAAGGTGGGAGACCAGCCCACACCTAAATTTCCTCATCTTGACTTCACCAAGACCCAAGTCCCGAGCAAGATGTATGAAGTTGCAACAATCTGCTATAATACCACTGGAGGCCCACTGGACAGCCTATATGACCGGGGAAAGGAAGATGCAATAACACCACAATCGAGCAATAAATCAGTCCAAAACGAAAGTATAATAACCATTGCCAATCCTCCTTTCGATACGATACTTAATCAATTGGGCAGTAGAGCATATGAATCTCCTTGGTGCCTTAGAATGAGTTCTAAATATACGAGCTGGGCTAACAAATCAGCCACTGCTTTATAATACTTGGCAATGGCCTTGATGATTTGGCGCCAAACAGTGTTTTCTTCAGGTAGAAACCTTCAGATCCCCCATTTATCAAGGACAGCATCATTCTTAGGCTTTATATCACCAATGCCTAGGCCACCCATGAATAAGGGAGGCTGAATTCTTAGTTAATATTTATGCAAGCCATCACCACTAGATCCCTCCACACACACCAAAAAAAAAAAAAAAAAAATCTTTAAAGAGCTTCTCCATGGATTTTGCAACCCTGTTAGAAAATGTGGCTGAATGACTGCATGCCAACCGCCCTTGGAGAATTACACAGATTTCCAATTATAAGGCTTCTGGTGAATTCTTTCATTGACCAGCTGCCAAATCATAGAACTACTCTTTCGAATACCACCCAAAATAAGAGCAAAATAGGTGGAAGGCCAAGTACCTAGCTTACATAGCTTACAATCAAATTTCCCATTCAAAAAGGATAATTCTGACCGATTAAAATAAGTGCCAACATTTCACTCTTGCCATAATTTATATTCAACCCTGAAGTAGCATCATATGTTGTCCCACCTTCCTTAATATTTAACTAGCTTATCTGCAATCGATTTGTGGCCTTTGTTTGGAGTAAAAAGAAAAGAAAAGTTACCAGGCCACGGAAATTAGTTTGGCTGGCTAAATTAGCTTAGAAGGGAATGTAATAATTCATTTCAAAATGTGCATTAAAATTCGCTTGTTCTTCTTTGAGCAGCAAAGCAACCAAGGGTGGACGGAAAGTTATTGCTCGAAGGATTGCAAAGGGTCGATCAAGAATAACTGCATAATGTTCATCTCAAGTCAGGTCCATTTGAATTCCCCTGCCAAAATCTTGTGTAGGCTACGTTAGTTTTTTCTTTAATTAACTCAAAAGAATTGCTATCACTGGCTGAATAACCCCCTTTCTTATTGGTAGTCTTCTTAGGCCTCGGAATACAGACTGTATAAACTTCTCTGTTTTTCAGAATTACCATGCATTAAACCTTCCATATTGAAGTTTCAGTTACTTTTATTTTTATTTCTTTCTTAACTTGGCTACAAAACAGTTTACTTTCGGTTCATGGTGGCTGCTGATGCTGCACAGAGCAAATAAACATAACTTAAGCGTGTGAAAGGTGCCAAAAGGAACAGAATGTGAGGTTTTAAGTCATTTTATGACTAAAGCCATTAACTTATCTGAATTCATGCTGGG

mRNA sequence

CTTGCGTTCATTCTCCCCACCCCTCTTCTTTGCCTTCGATTTCTCCTTCTCCCACCTTTGCACAGCCGCACACCGCCGCTAACCCACCGGAAATTTTCTTTCTTTTCCCATCGCTCCCCTGCGGCAGCCACACCAACCTTACATTTTGCCGCACACTGTCACCAACCTCACTGCCACGCCCATCTTTGCTTTCTAAGGGTTAGTGAGCTCGTTCTTTTGCTCATGGCGTCCAAACTTCTGATTCGGACGGGAACCTCTTTGATAAATCGATTGCGATTAAGTTCAGCGCATCAGAATAACAGGATTTGGAGTAACCAAGCTCTGTCCCATGGCCATGGCGTTGAAGTCACTCCGATGCTTTTTCCTTCAGTCTCTAAGCACCAGACTGCTCGTCATTTGCAGCAGAATGACAACGAATCGTTGAGGAAGCTCGAATCGGAGGGCATTTTCTTTCCTTTTGGGCTTCCGTCGCTCCGGTTCTTCTTGCCCGATGGAGATGCTTCTTCGACTCAAGAACCATTGCTCTTATTTCCTAAAAGGACTTTTCAACCTAGCATCATCAGGCGAAAAAGGAATCATGGATTTTTTGCCCGCAAAGCAACCAAGGGTGGACGGAAAGTTATTGCTCGAAGGATTGCAAAGGTTTACTTTCGGTTCATGGTGGCTGCTGATGCTGCACAGAGCAAATAAACATAACTTAAGCGTGTGAAAGGTGCCAAAAGGAACAGAATGTGAGGTTTTAAGTCATTTTATGACTAAAGCCATTAACTTATCTGAATTCATGCTGGG

Coding sequence (CDS)

CTTGCGTTCATTCTCCCCACCCCTCTTCTTTGCCTTCGATTTCTCCTTCTCCCACCTTTGCACAGCCGCACACCGCCGCTAACCCACCGGAAATTTTCTTTCTTTTCCCATCGCTCCCCTGCGGCAGCCACACCAACCTTACATTTTGCCGCACACTGTCACCAACCTCACTGCCACGCCCATCTTTGCTTTCTAAGGGTTAGTGAGCTCGTTCTTTTGCTCATGGCGTCCAAACTTCTGATTCGGACGGGAACCTCTTTGATAAATCGATTGCGATTAAGTTCAGCGCATCAGAATAACAGGATTTGGAGTAACCAAGCTCTGTCCCATGGCCATGGCGTTGAAGTCACTCCGATGCTTTTTCCTTCAGTCTCTAAGCACCAGACTGCTCGTCATTTGCAGCAGAATGACAACGAATCGTTGAGGAAGCTCGAATCGGAGGGCATTTTCTTTCCTTTTGGGCTTCCGTCGCTCCGGTTCTTCTTGCCCGATGGAGATGCTTCTTCGACTCAAGAACCATTGCTCTTATTTCCTAAAAGGACTTTTCAACCTAGCATCATCAGGCGAAAAAGGAATCATGGATTTTTTGCCCGCAAAGCAACCAAGGGTGGACGGAAAGTTATTGCTCGAAGGATTGCAAAGGTTTACTTTCGGTTCATGGTGGCTGCTGATGCTGCACAGAGCAAATAA

Protein sequence

LAFILPTPLLCLRFLLLPPLHSRTPPLTHRKFSFFSHRSPAAATPTLHFAAHCHQPHCHAHLCFLRVSELVLLLMASKLLIRTGTSLINRLRLSSAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFGLPSLRFFLPDGDASSTQEPLLLFPKRTFQPSIIRRKRNHGFFARKATKGGRKVIARRIAKVYFRFMVAADAAQSK

Homology

[Close]

BLAST of ClCG07G013950 vs. NCBI nr
Match: XP_004141160.2 (uncharacterized protein LOC101210601 [Cucumis sativus] >XP_031738493.1 uncharacterized protein LOC101210601 [Cucumis sativus] >KGN59796.1 hypothetical protein Csa_001175 [Cucumis sativus])

HSP 1 Score: 328.9 bits (842), Expect = 3.4e-86
Identity = 165/181 (91.16%), Postives = 171/181 (94.48%), Query Frame = 0


Query: 34  FFSHRSPAAATPTLHFAAHCHQPHCHAHLCFLRVSELVLLLMASKLLIRTGTSLINRLRL 93
           F   RSPAAATPT HFAAHCHQPHCHAHL FLRVSELVLLLMASKLLIRTG+SL+NRLRL
Sbjct: 36  FLLPRSPAAATPTFHFAAHCHQPHCHAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRL 95

Query: 94  SSAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPF 153
           SSAHQNNRIW +QALSHGHGVEVTPMLFPSVSKHQTA  LQQND ESLR+L+SEGIFFPF
Sbjct: 96  SSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPF 155

Query: 154 GLPSLRFFLPDGDASSTQEPLLLFPKRTFQPSIIRRKRNHGFFARKATKGGRKVIARRIA 213
           GLPSLRFFLPDGDASSTQEP+LLFPKRTFQPS IRRKRNHGFFARKATKGGRKVIARRIA
Sbjct: 156 GLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIA 215

Query: 214 K 215
           K
Sbjct: 216 K 216

[Close]

BLAST of ClCG07G013950 vs. NCBI nr
Match: XP_022955352.1 (uncharacterized protein LOC111457406 isoform X2 [Cucurbita moschata] >XP_022955353.1 uncharacterized protein LOC111457406 isoform X2 [Cucurbita moschata])

HSP 1 Score: 255.4 bits (651), Expect = 4.7e-64
Identity = 127/140 (90.71%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 75  MASKLLIRTGTSLINRLRLSSAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQ 134
           MASKLLIRTG SL+NRLRLSS HQNN IWS+Q+LS GHGV+VTPMLFPSVSKHQTA HLQ
Sbjct: 1   MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQ 60

Query: 135 QNDNESLRKLESEGIFFPFGLPSLRFFLPDGDASSTQEPLLLFPKRTFQPSIIRRKRNHG 194
           QND ESLRKLESEGIFFPFGLPSLRFFLPDGD SSTQEP+LLFPKRTFQPS IRRKRNHG
Sbjct: 61  QNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 195 FFARKATKGGRKVIARRIAK 215
           FFARKATKGGRKVIARRIAK
Sbjct: 121 FFARKATKGGRKVIARRIAK 140

[Close]

BLAST of ClCG07G013950 vs. NCBI nr
Match: XP_008447614.1 (PREDICTED: uncharacterized protein LOC103490028 [Cucumis melo])

HSP 1 Score: 255.0 bits (650), Expect = 6.2e-64
Identity = 127/140 (90.71%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 75  MASKLLIRTGTSLINRLRLSSAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQ 134
           MASKLLIRTG S +NRLRLSSAHQNNRIW +QALSHGHGVEVTPMLFPSVSKHQ A  LQ
Sbjct: 1   MASKLLIRTGNSFMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQIAHPLQ 60

Query: 135 QNDNESLRKLESEGIFFPFGLPSLRFFLPDGDASSTQEPLLLFPKRTFQPSIIRRKRNHG 194
           QND ESLR+L+SEGIFFPFGLPSLRFFLPDGDASSTQEP+LLFPKRTFQPS IRRKRNHG
Sbjct: 61  QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 195 FFARKATKGGRKVIARRIAK 215
           FFARKATKGGRKVIARRIAK
Sbjct: 121 FFARKATKGGRKVIARRIAK 140

[Close]

BLAST of ClCG07G013950 vs. NCBI nr
Match: KAG6581832.1 (hypothetical protein SDJN03_21834, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253.4 bits (646), Expect = 1.8e-63
Identity = 126/140 (90.00%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 75  MASKLLIRTGTSLINRLRLSSAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQ 134
           MASKLLIRTG SL+NRLRLSS HQNN IWS+Q+LS GHGV+VTPMLFPSVSKHQTA HLQ
Sbjct: 1   MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQ 60

Query: 135 QNDNESLRKLESEGIFFPFGLPSLRFFLPDGDASSTQEPLLLFPKRTFQPSIIRRKRNHG 194
           QND ESLRKLESEGIFFPFGLPSLRFFLPDG+ SSTQEP+LLFPKRTFQPS IRRKRNHG
Sbjct: 61  QNDTESLRKLESEGIFFPFGLPSLRFFLPDGNTSSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 195 FFARKATKGGRKVIARRIAK 215
           FFARKATKGGRKVIARRIAK
Sbjct: 121 FFARKATKGGRKVIARRIAK 140

[Close]

BLAST of ClCG07G013950 vs. NCBI nr
Match: XP_038904887.1 (uncharacterized protein LOC120091114 isoform X1 [Benincasa hispida])

HSP 1 Score: 253.4 bits (646), Expect = 1.8e-63
Identity = 129/140 (92.14%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 75  MASKLLIRTGTSLINRLRLSSAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQ 134
           MASKLLIRTG SLINRLRLSS HQ++RI SNQALS+GHGVEVTPMLFPSVSK QTA HLQ
Sbjct: 1   MASKLLIRTGNSLINRLRLSSTHQSHRICSNQALSYGHGVEVTPMLFPSVSKDQTAHHLQ 60

Query: 135 QNDNESLRKLESEGIFFPFGLPSLRFFLPDGDASSTQEPLLLFPKRTFQPSIIRRKRNHG 194
           QND ESLRKLE EGIFFPFGLPSLRFFLPDGDASSTQEP+LLFPKRTFQPSIIRRKRNHG
Sbjct: 61  QNDTESLRKLELEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSIIRRKRNHG 120

Query: 195 FFARKATKGGRKVIARRIAK 215
           FFARKATKGGRKVIARRIAK
Sbjct: 121 FFARKATKGGRKVIARRIAK 140

[Close]

BLAST of ClCG07G013950 vs. ExPASy Swiss-Prot
Match: A6W3V3 (50S ribosomal protein L34 OS=Marinomonas sp. (strain MWYL1) OX=400668 GN=rpmH PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.0e-08
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 179 KRTFQPSIIRRKRNHGFFARKATKGGRKVIARRIAK 215
           KRTFQPS+++RKRNHGF AR ATKGGR+VIARR A+
Sbjct: 2   KRTFQPSVLKRKRNHGFRARMATKGGRQVIARRRAR 37

[Close]

BLAST of ClCG07G013950 vs. ExPASy Swiss-Prot
Match: Q47U32 (50S ribosomal protein L34 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) OX=167879 GN=rpmH PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-07
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 179 KRTFQPSIIRRKRNHGFFARKATKGGRKVIARRIAK 215
           KRTFQPS+++RKRNHGF AR ATK GR VIARR AK
Sbjct: 2   KRTFQPSVLKRKRNHGFRARMATKNGRAVIARRRAK 37

[Close]

BLAST of ClCG07G013950 vs. ExPASy Swiss-Prot
Match: B4F0U4 (50S ribosomal protein L34 OS=Proteus mirabilis (strain HI4320) OX=529507 GN=rpmH PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.2e-07
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 179 KRTFQPSIIRRKRNHGFFARKATKGGRKVIARRIAKVYFRFMVAA 224
           KRTFQPS+++R RNHGF AR ATK GR+V+ARR AK   R  V++
Sbjct: 2   KRTFQPSVLKRNRNHGFRARMATKNGRQVLARRRAKGRARLTVSS 46

[Close]

BLAST of ClCG07G013950 vs. ExPASy Swiss-Prot
Match: P22836 (50S ribosomal protein L34 OS=Proteus mirabilis OX=584 GN=rpmH PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.2e-07
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 179 KRTFQPSIIRRKRNHGFFARKATKGGRKVIARRIAKVYFRFMVAA 224
           KRTFQPS+++R RNHGF AR ATK GR+V+ARR AK   R  V++
Sbjct: 2   KRTFQPSVLKRNRNHGFRARMATKNGRQVLARRRAKGRARLTVSS 46

[Close]

BLAST of ClCG07G013950 vs. ExPASy Swiss-Prot
Match: Q5QZK0 (50S ribosomal protein L34 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 GN=rpmH PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.5e-07
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 179 KRTFQPSIIRRKRNHGFFARKATKGGRKVIARRIAK 215
           KRTFQPS+++RKR+HGF AR ATK GRKV+ARR A+
Sbjct: 2   KRTFQPSVLKRKRSHGFRARMATKNGRKVLARRRAR 37

[Close]

BLAST of ClCG07G013950 vs. ExPASy TrEMBL
Match: A0A0A0LIB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G847215 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.6e-86
Identity = 165/181 (91.16%), Postives = 171/181 (94.48%), Query Frame = 0


Query: 34  FFSHRSPAAATPTLHFAAHCHQPHCHAHLCFLRVSELVLLLMASKLLIRTGTSLINRLRL 93
           F   RSPAAATPT HFAAHCHQPHCHAHL FLRVSELVLLLMASKLLIRTG+SL+NRLRL
Sbjct: 36  FLLPRSPAAATPTFHFAAHCHQPHCHAHLLFLRVSELVLLLMASKLLIRTGSSLMNRLRL 95

Query: 94  SSAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPF 153
           SSAHQNNRIW +QALSHGHGVEVTPMLFPSVSKHQTA  LQQND ESLR+L+SEGIFFPF
Sbjct: 96  SSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQTAHPLQQNDTESLRQLQSEGIFFPF 155

Query: 154 GLPSLRFFLPDGDASSTQEPLLLFPKRTFQPSIIRRKRNHGFFARKATKGGRKVIARRIA 213
           GLPSLRFFLPDGDASSTQEP+LLFPKRTFQPS IRRKRNHGFFARKATKGGRKVIARRIA
Sbjct: 156 GLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRIA 215

Query: 214 K 215
           K
Sbjct: 216 K 216

[Close]

BLAST of ClCG07G013950 vs. ExPASy TrEMBL
Match: A0A6J1GTQ0 (uncharacterized protein LOC111457406 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457406 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 2.3e-64
Identity = 127/140 (90.71%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 75  MASKLLIRTGTSLINRLRLSSAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQ 134
           MASKLLIRTG SL+NRLRLSS HQNN IWS+Q+LS GHGV+VTPMLFPSVSKHQTA HLQ
Sbjct: 1   MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQ 60

Query: 135 QNDNESLRKLESEGIFFPFGLPSLRFFLPDGDASSTQEPLLLFPKRTFQPSIIRRKRNHG 194
           QND ESLRKLESEGIFFPFGLPSLRFFLPDGD SSTQEP+LLFPKRTFQPS IRRKRNHG
Sbjct: 61  QNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 195 FFARKATKGGRKVIARRIAK 215
           FFARKATKGGRKVIARRIAK
Sbjct: 121 FFARKATKGGRKVIARRIAK 140

[Close]

BLAST of ClCG07G013950 vs. ExPASy TrEMBL
Match: A0A1S3BHV7 (uncharacterized protein LOC103490028 OS=Cucumis melo OX=3656 GN=LOC103490028 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 3.0e-64
Identity = 127/140 (90.71%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 75  MASKLLIRTGTSLINRLRLSSAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQ 134
           MASKLLIRTG S +NRLRLSSAHQNNRIW +QALSHGHGVEVTPMLFPSVSKHQ A  LQ
Sbjct: 1   MASKLLIRTGNSFMNRLRLSSAHQNNRIWGSQALSHGHGVEVTPMLFPSVSKHQIAHPLQ 60

Query: 135 QNDNESLRKLESEGIFFPFGLPSLRFFLPDGDASSTQEPLLLFPKRTFQPSIIRRKRNHG 194
           QND ESLR+L+SEGIFFPFGLPSLRFFLPDGDASSTQEP+LLFPKRTFQPS IRRKRNHG
Sbjct: 61  QNDTESLRQLQSEGIFFPFGLPSLRFFLPDGDASSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 195 FFARKATKGGRKVIARRIAK 215
           FFARKATKGGRKVIARRIAK
Sbjct: 121 FFARKATKGGRKVIARRIAK 140

[Close]

BLAST of ClCG07G013950 vs. ExPASy TrEMBL
Match: A0A6J1IXD9 (uncharacterized protein LOC111480019 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480019 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 4.3e-63
Identity = 126/140 (90.00%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 75  MASKLLIRTGTSLINRLRLSSAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQ 134
           MASKLLIRTG SL+NRLRLSS  QNN IWS+Q+LS GHGV+VTPMLFPSVSKHQTA HLQ
Sbjct: 1   MASKLLIRTGNSLMNRLRLSSTLQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQ 60

Query: 135 QNDNESLRKLESEGIFFPFGLPSLRFFLPDGDASSTQEPLLLFPKRTFQPSIIRRKRNHG 194
           QND ESLRKLESEGIFFPFGLPSLRFFLPDGD SSTQEP+LLFPKRTFQPS IRRKRNHG
Sbjct: 61  QNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPMLLFPKRTFQPSTIRRKRNHG 120

Query: 195 FFARKATKGGRKVIARRIAK 215
           FFARKATKGGRKVIARRIAK
Sbjct: 121 FFARKATKGGRKVIARRIAK 140

[Close]

BLAST of ClCG07G013950 vs. ExPASy TrEMBL
Match: A0A6J1DFJ1 (uncharacterized protein LOC111020350 OS=Momordica charantia OX=3673 GN=LOC111020350 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 1.3e-62
Identity = 123/140 (87.86%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 75  MASKLLIRTGTSLINRLRLSSAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQ 134
           MASKLLIR G S INRLRL+S  Q++RIWS+Q LSHGHGVEVTPMLFPSVSKHQT+ HLQ
Sbjct: 1   MASKLLIRIGNSFINRLRLNSTQQSHRIWSHQTLSHGHGVEVTPMLFPSVSKHQTSHHLQ 60

Query: 135 QNDNESLRKLESEGIFFPFGLPSLRFFLPDGDASSTQEPLLLFPKRTFQPSIIRRKRNHG 194
           QND ESLRKLESEG+FFPFGLPSLRFFLPDGDASS+QEP+LLFPKRTFQPSIIRRKRNHG
Sbjct: 61  QNDIESLRKLESEGVFFPFGLPSLRFFLPDGDASSSQEPMLLFPKRTFQPSIIRRKRNHG 120

Query: 195 FFARKATKGGRKVIARRIAK 215
           FFARKATKGGRKVI+RRIAK
Sbjct: 121 FFARKATKGGRKVISRRIAK 140

[Close]

BLAST of ClCG07G013950 vs. TAIR 10
Match: AT3G13882.1 (Ribosomal protein L34 )

HSP 1 Score: 144.8 bits (364), Expect = 8.4e-35
Identity = 84/143 (58.74%), Postives = 101/143 (70.63%), Query Frame = 0


Query: 75  MASKLLIRTGTSLINRL---RLSSAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTAR 134
           MA+K LIR+G SL+NR      ++  QNN   S Q ++   G E+ P  FPS+S  Q++ 
Sbjct: 1   MAAKTLIRSGASLMNRFLTKPTTNIVQNNLRSSFQYIA-PQGQEIPPYFFPSLSNLQSSL 60

Query: 135 HLQQNDNESLRKLESEGIFFPFGLPSLRFFLPDGDASSTQEPLLLFPKRTFQPSIIRRKR 194
             + ND  SL++L   G  +P GLPSL FFLP+ D SS  EPLLLFPKRTFQPS IRRKR
Sbjct: 61  ISRPNDTASLQELNERGFLYPSGLPSLEFFLPEVDPSS--EPLLLFPKRTFQPSTIRRKR 120

Query: 195 NHGFFARKATKGGRKVIARRIAK 215
           NHGFFARKATKGGR+VIARRIAK
Sbjct: 121 NHGFFARKATKGGRRVIARRIAK 140

[Close]

BLAST of ClCG07G013950 vs. TAIR 10
Match: AT3G13882.2 (Ribosomal protein L34 )

HSP 1 Score: 113.2 bits (282), Expect = 2.7e-25
Identity = 73/163 (44.79%), Postives = 86/163 (52.76%), Query Frame = 0


Query: 97  HQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFGLP 156
           +QNN   S Q ++   G E+ P  FPS+S  Q++   + ND  SL++L   G  +P GLP
Sbjct: 33  NQNNLRSSFQYIA-PQGQEIPPYFFPSLSNLQSSLISRPNDTASLQELNERGFLYPSGLP 92

Query: 157 SLRFFLP--------DGDASS-------------------------------------TQ 215
           SL FFLP        D   SS                                     + 
Sbjct: 93  SLEFFLPEVYAMQSLDARESSALYCSLALRLLVSAKLYIFAARWYLSNVFVFGNVVDPSS 152

The following BLAST results are available for this feature:

BLAST of ClCG07G013950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141160.2	3.4e-86	91.16	uncharacterized protein LOC101210601 [Cucumis sativus] >XP_031738493.1 uncharact...	[more]
XP_022955352.1	4.7e-64	90.71	uncharacterized protein LOC111457406 isoform X2 [Cucurbita moschata] >XP_0229553...	[more]
XP_008447614.1	6.2e-64	90.71	PREDICTED: uncharacterized protein LOC103490028 [Cucumis melo]	[more]
KAG6581832.1	1.8e-63	90.00	hypothetical protein SDJN03_21834, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038904887.1	1.8e-63	92.14	uncharacterized protein LOC120091114 isoform X1 [Benincasa hispida]	[more]

BLAST of ClCG07G013950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A6W3V3	5.0e-08	77.78	50S ribosomal protein L34 OS=Marinomonas sp. (strain MWYL1) OX=400668 GN=rpmH PE...	[more]
Q47U32	1.9e-07	77.78	50S ribosomal protein L34 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-68...	[more]
B4F0U4	4.2e-07	62.22	50S ribosomal protein L34 OS=Proteus mirabilis (strain HI4320) OX=529507 GN=rpmH...	[more]
P22836	4.2e-07	62.22	50S ribosomal protein L34 OS=Proteus mirabilis OX=584 GN=rpmH PE=3 SV=1	[more]
Q5QZK0	5.5e-07	72.22	50S ribosomal protein L34 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15...	[more]

BLAST of ClCG07G013950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIB6	1.6e-86	91.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G847215 PE=3 SV=1	[more]
A0A6J1GTQ0	2.3e-64	90.71	uncharacterized protein LOC111457406 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3BHV7	3.0e-64	90.71	uncharacterized protein LOC103490028 OS=Cucumis melo OX=3656 GN=LOC103490028 PE=...	[more]
A0A6J1IXD9	4.3e-63	90.00	uncharacterized protein LOC111480019 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1DFJ1	1.3e-62	87.86	uncharacterized protein LOC111020350 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of ClCG07G013950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13882.1	8.4e-35	58.74	Ribosomal protein L34	[more]
AT3G13882.2	2.7e-25	44.79	Ribosomal protein L34	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.3980		coord: 177..215 e-value: 4.4E-15 score: 57.3
None	No IPR available	PANTHER	PTHR14503:SF8	RIBOSOMAL PROTEIN L34	coord: 75..218
IPR000271	Ribosomal protein L34	TIGRFAM	TIGR01030	TIGR01030	coord: 179..214 e-value: 1.4E-13 score: 48.8
IPR000271	Ribosomal protein L34	PFAM	PF00468	Ribosomal_L34	coord: 179..214 e-value: 4.4E-15 score: 55.4
IPR000271	Ribosomal protein L34	PANTHER	PTHR14503	MITOCHONDRIAL RIBOSOMAL PROTEIN 34 FAMILY MEMBER	coord: 75..218
IPR020939	Ribosomal protein L34, conserved site	PROSITE	PS00784	RIBOSOMAL_L34	coord: 179..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G013950.1	ClCG07G013950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome