ClCG07G013490 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G013490
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Mediator of RNA polymerase II transcription subunit 6
Location	CG_Chr07: 29916166 .. 29919168 (-)
RNA-Seq Expression	ClCG07G013490
Synteny	ClCG07G013490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACTCCACCACCCCCGACGGCCCCGCCAGGGATCGGGAATTTTGAGGATGGGCCGCTGCCGGCAGCGCCTCAGCCTCCAGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTCTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTATTTCGCCTTGTCCCCTTTCTACGACTGGGCTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTCTCTCAACTCTCGTATGATTTCTCGTCTTCTATTTCTTTTTTTTTTTTTTATTTCTGTTAATAGGATTCGTCTTTTCTATTAATAGTTTTCTTCTTCTAATTGATTGTATGTATGGCAAATGTTTTCTTTTTCTCCTATACTTGGATAATTCAACCATGTTCTTCATTTGTTTTTGTTCAAGTGAGATGTCCAAAATTTGTGATGGGATTCTTAAGACGTTGTTAATGGATTATAATAAGTTATGTTAATTGTAACACTAGGTTTCAATTTTCATTTAGGCATTACCATGATGGGTAATCTTCTGTTCAACAGAAAAATGACAGGTATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAGAGGGATGGCCCTGAGAAAGTCACACCGATGCTGACTTACTATATCTTGGATGGTTCAATTTACCAGGCGCCTCAGCTTTGCAATGTTTTTGCTGCCCGAGTTGTGAGATTGTCATACTTATCACTGCCATTTATTTGGTGCAATCTTAGTTTTTTTTTTAGCTGATAATTGGTGCATTTGGATCATTTCGTAGTTCCATTTAGTAAATTATCATAGTGGGTAACATCTCTTCAACTGTAAACTTAATTGTTGGGTTCCTTTTCTTTTTCCCCTATGCTTTGAAATTAATGTAGAATTTGTTTTAAAATGTATGTCTATTCTGTATTCGGCCTCTCTCTTGCTCTGTTTTATTGTAGTCTTACGTTGAGTTTCCATCATACTGCAGAGTCGGGCATTANAGCTGATAATTGGTGCATTTGGATCATTTCGTAGTTCCATTTAGTAAATTATCATAGTGGGTAACATCTCTTCAACTGTAAACTTAATTGTTGGGTTCCTTTTCTTTTTCCCCTATGCTTTGAAATTAATGTAGAATTTGTTTTAAAATGTATGGCTATTCTGTATTCGGCCTCTCTCTTGCTCTGTTTTATTGTAGTCTTACGTTGAGTTTCCATCATACTGCAGAGTCGGGCATTATATTACATATCAAAGGCCTTTACCACTGCTTCTTCAAAGTTGGAGAAGATAGGATATGGTATCTAGCTATTGGTGATATATTTTATGCACTTACTATTTTTAGTTATAAGTAAAAGATAATTATTGATCAATTATTTTACGCACTCGCGCTTTTGTTATCTTATCTTAACACGTGTTGTTTTTAAAATTTTAGTTAAGTCATACTACTTTAGAGATTAACTTTTTTTTATTGTTACTAATGAAGAATTGGAGACTCCTTGACACTAAAAAAACAAGGGAGACAAACTCTATGATGGCCATTCAGGGTTTAGATAGTTGACATTTATAACACCCAATAGGCTTTATGAATGTTCTTTTGAATTCAGACTTCATTCTGAAATCAAATTTTGGGTCTTATATGGAATAGTTCATTCTGATAAGAAATGTAGAATACACTACAAAGATACAATGTAGCACATTGCCTAATTGCCTCTGATAATCTTTAACTTTCTCCTTTCAGCTTTGCAACTTCAATTTTATTAACTATTTTCTCATTTCTGGTTCAGTTGATTCTGAAAATGAGAGTGAAGGAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCCTTACAGCGCAAGGTAATTTTTTAAATATCATGAATCATCTACTCTCAAAGGACATATTGGTAATGCATGAGCTTTATCTTTTCTATTATAGAAGATGATATTGTGTTTGTGTATATGCTGCAAAGAGCTAGTTTATCAAATGTCTTGTATTAAGAAGATAGTGGTGAGAATTTGGATGCAGTTTTTCTCGGGTCATAATCTCACCAGATGAAATTTTCTGCTTTTAAACAACATGTATGTATAGTTGTTGAACTTCTACAAATTATGTTTTTCATATTGTGTCTTCTAATGGATGACCTATATTTCAAATCAATGAAATTGTTTTCACTTATAAGGTCAATATTTTAAAATAAATGATTTTTTTTACGTACAGAATTTGGAGTACATGAATATTAAATTTGATGTGTATAATAACATTAACATTTACAAATCCTCCATCAGAGCTGGAGTTTGTAAAAGCTGTTGGAAATCCTTGTCTGTATTAATATGGGGGTTCCTTATGTCGATTCTTTAGCTGATTGTATAAATGAGTGTTATTAAGTACTCATATGATTTCTCTAAGGGGTATATTTATTCGAGTGAATCTTTCAAATACAGTTTTAGATTGAAGTCCTTGTCGCATTTCATTCAATAACAACAGAATTTTTATGAAGTCTCATCAGTTTATTTAAGATTCGAACAACATTACCACACCTAATCTAACCACTCATAAACCACTTACCTGACTCATCCTGAATGGACAACAATTGACTTAGGCTTCAAATCTGTATAAATTCATATATATTGTATCTGTAATTAATTGAAATTAATCCAATTGAACTTGTAAAACAATTAAATTATCTTGGGAGATAAGCTAGCGGTCAATTTCGAATATATTTTGTCTCTCTAATGCTTTGGCTGAAGATCCTCATGGCAAATTTTCTTGTTAACACTTTTGCAGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGCTATGCTCCTGCTCCCACAGCAGAAACAGAGAAAGGCCCTGAAAATCAGCTAGGAGAATCACAACAGCCTCCAGCTGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGA

mRNA sequence

ATGGCAACTCCACCACCCCCGACGGCCCCGCCAGGGATCGGGAATTTTGAGGATGGGCCGCTGCCGGCAGCGCCTCAGCCTCCAGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTCTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTATTTCGCCTTGTCCCCTTTCTACGACTGGGCTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTCTCTCAACTCTCAAAAATGACAGGTATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAGAGGGATGGCCCTGAGAAAGTCACACCGATGCTGACTTACTATATCTTGGATGGTTCAATTTACCAGGCGCCTCAGCTTTGCAATGTTTTTGCTGCCCGAGTTTTCCATTTAGTAAATTATCATAGTGGTCTTACGTTGAGTTTCCATCATACTGCAGAGTCGGGCATTATATTACATATCAAAGGCCTTTACCACTGCTTCTTCAAAGTTGGAGAAGATAGGATATGGTATCTAGCTATTGGTGATATATTTTATGCACTTACTATTTTTAGTTATAAACTTCATTCTGAAATCAAATTTTGGGTCTTATATGGAATAGTTCATTCTGATAAGAAATTTGATTCTGAAAATGAGAGTGAAGGAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCCTTACAGCGCAAGAAGATGATATTGTGTTTGTGTATATGCTGCAAAGAGCTAGTTTATCAAATGTCTTGTATTAAGAAGATAGTGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGCTATGCTCCTGCTCCCACAGCAGAAACAGAGAAAGGCCCTGAAAATCAGCTAGGAGAATCACAACAGCCTCCAGCTGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGA

Coding sequence (CDS)

ATGGCAACTCCACCACCCCCGACGGCCCCGCCAGGGATCGGGAATTTTGAGGATGGGCCGCTGCCGGCAGCGCCTCAGCCTCCAGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTCTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTATTTCGCCTTGTCCCCTTTCTACGACTGGGCTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTCTCTCAACTCTCAAAAATGACAGGTATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAGAGGGATGGCCCTGAGAAAGTCACACCGATGCTGACTTACTATATCTTGGATGGTTCAATTTACCAGGCGCCTCAGCTTTGCAATGTTTTTGCTGCCCGAGTTTTCCATTTAGTAAATTATCATAGTGGTCTTACGTTGAGTTTCCATCATACTGCAGAGTCGGGCATTATATTACATATCAAAGGCCTTTACCACTGCTTCTTCAAAGTTGGAGAAGATAGGATATGGTATCTAGCTATTGGTGATATATTTTATGCACTTACTATTTTTAGTTATAAACTTCATTCTGAAATCAAATTTTGGGTCTTATATGGAATAGTTCATTCTGATAAGAAATTTGATTCTGAAAATGAGAGTGAAGGAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCCTTACAGCGCAAGAAGATGATATTGTGTTTGTGTATATGCTGCAAAGAGCTAGTTTATCAAATGTCTTGTATTAAGAAGATAGTGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGCTATGCTCCTGCTCCCACAGCAGAAACAGAGAAAGGCCCTGAAAATCAGCTAGGAGAATCACAACAGCCTCCAGCTGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGA

Protein sequence

MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIFSYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF

Homology

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BLAST of ClCG07G013490 vs. NCBI nr
Match: XP_038896808.1 (mediator of RNA polymerase II transcription subunit 6 [Benincasa hispida])

HSP 1 Score: 424.1 bits (1089), Expect = 1.1e-114
Identity = 234/333 (70.27%), Postives = 235/333 (70.57%), Query Frame = 0


Query: 1   MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPPTAPPGIGNFE GPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKV 180
           LTYYILDGSIYQAPQLCNVFAARV   + Y                              
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYY------------------------------ 180

Query: 181 GEDRIWYLAIGDIFYALTIFSYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETIN 240
                       I  A T  S KL          G V      DSENE E VKPAKETIN
Sbjct: 181 ------------ISKAFTTASSKLEK-------IGYV------DSENEGEEVKPAKETIN 240

Query: 241 FKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT 300
           FKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPAPT
Sbjct: 241 FKEVKRVDHILASLQRK------------------------LPPAPPPPPFPEGYAPAPT 254

Query: 301 AETEKGPENQLGESQQPPADPIIDQGPAKRMKF 334
           AETEKGPEN LGESQQPPADPIIDQGPAKRMKF
Sbjct: 301 AETEKGPENPLGESQQPPADPIIDQGPAKRMKF 254

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BLAST of ClCG07G013490 vs. NCBI nr
Match: XP_004149176.2 (mediator of RNA polymerase II transcription subunit 6 [Cucumis sativus] >KGN58013.1 hypothetical protein Csa_011693 [Cucumis sativus])

HSP 1 Score: 415.6 bits (1067), Expect = 4.0e-112
Identity = 231/333 (69.37%), Postives = 233/333 (69.97%), Query Frame = 0


Query: 1   MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPPTAPPG GNFE GPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKV 180
           LTYYILDGSIYQAPQLC+VFAARV   + Y                              
Sbjct: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYY------------------------------ 180

Query: 181 GEDRIWYLAIGDIFYALTIFSYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETIN 240
                       I  A T  S KL          G V      DSENESE VKPAKETIN
Sbjct: 181 ------------ISKAFTTASSKLEK-------IGYV------DSENESEEVKPAKETIN 240

Query: 241 FKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT 300
           FKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPA T
Sbjct: 241 FKEVKRVDHILASLQRK------------------------LPPAPPPPPFPEGYAPAAT 254

Query: 301 AETEKGPENQLGESQQPPADPIIDQGPAKRMKF 334
           AETEKGPENQ GESQQP ADPIIDQGPAKRMKF
Sbjct: 301 AETEKGPENQQGESQQPSADPIIDQGPAKRMKF 254

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BLAST of ClCG07G013490 vs. NCBI nr
Match: XP_008447572.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo] >KAA0050863.1 mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo var. makuwa] >TYK08489.1 mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 414.1 bits (1063), Expect = 1.2e-111
Identity = 231/334 (69.16%), Postives = 234/334 (70.06%), Query Frame = 0


Query: 1   MATPPPP-TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPP TAPPG GNFE GP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFK 180
           MLTYYILDGSIYQAPQLCNVFAARV   + Y                             
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYY----------------------------- 180

Query: 181 VGEDRIWYLAIGDIFYALTIFSYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETI 240
                        I  A T  S KL          G V      DSENESE VKPAKETI
Sbjct: 181 -------------ISKAFTTASSKLEK-------IGYV------DSENESEEVKPAKETI 240

Query: 241 NFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAP 300
           NFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPAP
Sbjct: 241 NFKEVKRVDHILASLQRK------------------------LPPAPPPPPFPEGYAPAP 255

Query: 301 TAETEKGPENQLGESQQPPADPIIDQGPAKRMKF 334
           TA+TEKGPENQ GESQQP ADPIIDQGPAKRMKF
Sbjct: 301 TADTEKGPENQQGESQQPSADPIIDQGPAKRMKF 255

[Close]

BLAST of ClCG07G013490 vs. NCBI nr
Match: XP_022148297.1 (mediator of RNA polymerase II transcription subunit 6 [Momordica charantia])

HSP 1 Score: 403.7 bits (1036), Expect = 1.6e-108
Identity = 225/333 (67.57%), Postives = 226/333 (67.87%), Query Frame = 0


Query: 1   MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPP APPGI NFE GP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDW CNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKV 180
           LTYYILDGSIYQAPQLCNVFAARV   + Y                              
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYY------------------------------ 180

Query: 181 GEDRIWYLAIGDIFYALTIFSYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETIN 240
                       I  A T  S KL          G V      DSENESE VKP KETIN
Sbjct: 181 ------------ISKAFTTASSKLEK-------IGYV------DSENESEEVKPGKETIN 240

Query: 241 FKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT 300
           FKEVKRVDHILASLQRK                        LPPAPPPPPFPEGY PAPT
Sbjct: 241 FKEVKRVDHILASLQRK------------------------LPPAPPPPPFPEGYVPAPT 254

Query: 301 AETEKGPENQLGESQQPPADPIIDQGPAKRMKF 334
           AE EKGPENQ  E QQP ADPIIDQGPAKRMKF
Sbjct: 301 AEVEKGPENQPAELQQPSADPIIDQGPAKRMKF 254

[Close]

BLAST of ClCG07G013490 vs. NCBI nr
Match: XP_023524903.1 (mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo] >XP_023524905.1 mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo] >KAG7036453.1 Mediator of RNA polymerase II transcription subunit 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 389.0 bits (998), Expect = 4.0e-104
Identity = 220/333 (66.07%), Postives = 224/333 (67.27%), Query Frame = 0


Query: 1   MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPP    PPGIGNFE GP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPP----PPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKV 180
           LTYYILDGSIYQAPQLCNVFAARV   + Y                              
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYY------------------------------ 180

Query: 181 GEDRIWYLAIGDIFYALTIFSYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETIN 240
                       I  A T  S KL          G V      DSENESE VKPAK TI+
Sbjct: 181 ------------ISKAFTTASSKLEK-------IGYV------DSENESEEVKPAKGTID 240

Query: 241 FKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT 300
           FKEVKRVD ILASLQRK                        LPPAPPPPPFPEGY PAP 
Sbjct: 241 FKEVKRVDRILASLQRK------------------------LPPAPPPPPFPEGYVPAPA 250

Query: 301 AETEKGPENQLGESQQPPADPIIDQGPAKRMKF 334
           +E EKGPE+Q GE QQP ADPIIDQGPAKRMKF
Sbjct: 301 SEAEKGPESQQGELQQPAADPIIDQGPAKRMKF 250

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BLAST of ClCG07G013490 vs. ExPASy Swiss-Prot
Match: F4IXJ7 (Mediator of RNA polymerase II transcription subunit 6 OS=Arabidopsis thaliana OX=3702 GN=MED6 PE=1 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.8e-76
Identity = 176/329 (53.50%), Postives = 202/329 (61.40%), Query Frame = 0


Query: 8   TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWAC 67
           TA    GN  D  +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD  C
Sbjct: 10  TADTFNGNAAD-QIPPPLQPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTC 69

Query: 68  NNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILD 127
           NNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILD
Sbjct: 70  NNEILRRRSIHPLDLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILD 129

Query: 128 GSIYQAPQLCNVFAARVFHLV-NYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIW 187
           GSIYQAPQLC+VFAARV   + N     T      A S +    + L  C   +    + 
Sbjct: 130 GSIYQAPQLCSVFAARVSRTIYNISKAFT-----DAASKLETIRQDLQVCLVAI----VL 189

Query: 188 YLAIGDIFYALTIFSYKLHSEIKFWVLYGIVHSDKKFDSENESEGV--KPAKETINFKEV 247
            L++    Y L IF    + E     +YG   +   FD+EN++E    KPA ET++ KE+
Sbjct: 190 SLSVNLGSYFLLIFKLMANGE----QVYGF--NKFLFDTENQNEPAESKPASETVDLKEM 249

Query: 248 KRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPTAETE 307
           KRVD IL SL RK                        L P PPPPPFPEGY        +
Sbjct: 250 KRVDVILTSLYRK------------------------LAPPPPPPPFPEGYVSQEALGEK 298

Query: 308 KGPENQLGESQQPPADPIIDQGPAKRMKF 334
           +    Q GESQ P  DPIIDQGPAKRMKF
Sbjct: 310 EELGTQGGESQPPQVDPIIDQGPAKRMKF 298

[Close]

BLAST of ClCG07G013490 vs. ExPASy Swiss-Prot
Match: Q54PN3 (Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum OX=44689 GN=med6 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.1e-23
Identity = 55/122 (45.08%), Postives = 76/122 (62.30%), Query Frame = 0


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTG 90
           D+T + +RD LWL  YPL+   +  YF+ S FYD  CNNEQL+M+    LDLS L  M G
Sbjct: 65  DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDG 124

Query: 91  IEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLVNY 150
           +EY L + +EP  F+  KQ R  P  V     YY+++G+IYQAP+L  VF +RV   +++
Sbjct: 125 LEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISH 183

Query: 151 HS 153
            S
Sbjct: 185 LS 183

[Close]

BLAST of ClCG07G013490 vs. ExPASy Swiss-Prot
Match: O75586 (Mediator of RNA polymerase II transcription subunit 6 OS=Homo sapiens OX=9606 GN=MED6 PE=1 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 5.4e-19
Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 0


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWACNNEQLRMRSIHPLDLSQLSKM 90
           ++ GI + D  W+    L+   V DYF+   +PFYD  CNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 91  TGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLV 150
            GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L +V  +RV   V
Sbjct: 69  VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 124

[Close]

BLAST of ClCG07G013490 vs. ExPASy Swiss-Prot
Match: Q921D4 (Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus OX=10090 GN=Med6 PE=1 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 5.4e-19
Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 0


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWACNNEQLRMRSIHPLDLSQLSKM 90
           ++ GI + D  W+    L+   V DYF+   +PFYD  CNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 91  TGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLV 150
            GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L +V  +RV   V
Sbjct: 69  VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 124

[Close]

BLAST of ClCG07G013490 vs. ExPASy Swiss-Prot
Match: Q5RD94 (Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii OX=9601 GN=MED6 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.4e-19
Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 0


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWACNNEQLRMRSIHPLDLSQLSKM 90
           ++ GI + D  W+    L+   V DYF+   +PFYD  CNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 91  TGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVFHLV 150
            GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L +V  +RV   V
Sbjct: 69  VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 124

[Close]

BLAST of ClCG07G013490 vs. ExPASy TrEMBL
Match: A0A0A0L8C2 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_3G434940 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.9e-112
Identity = 231/333 (69.37%), Postives = 233/333 (69.97%), Query Frame = 0


Query: 1   MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPPTAPPG GNFE GPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKV 180
           LTYYILDGSIYQAPQLC+VFAARV   + Y                              
Sbjct: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYY------------------------------ 180

Query: 181 GEDRIWYLAIGDIFYALTIFSYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETIN 240
                       I  A T  S KL          G V      DSENESE VKPAKETIN
Sbjct: 181 ------------ISKAFTTASSKLEK-------IGYV------DSENESEEVKPAKETIN 240

Query: 241 FKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT 300
           FKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPA T
Sbjct: 241 FKEVKRVDHILASLQRK------------------------LPPAPPPPPFPEGYAPAAT 254

Query: 301 AETEKGPENQLGESQQPPADPIIDQGPAKRMKF 334
           AETEKGPENQ GESQQP ADPIIDQGPAKRMKF
Sbjct: 301 AETEKGPENQQGESQQPSADPIIDQGPAKRMKF 254

[Close]

BLAST of ClCG07G013490 vs. ExPASy TrEMBL
Match: A0A5D3CDR8 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00160 PE=3 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 5.6e-112
Identity = 231/334 (69.16%), Postives = 234/334 (70.06%), Query Frame = 0


Query: 1   MATPPPP-TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPP TAPPG GNFE GP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFK 180
           MLTYYILDGSIYQAPQLCNVFAARV   + Y                             
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYY----------------------------- 180

Query: 181 VGEDRIWYLAIGDIFYALTIFSYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETI 240
                        I  A T  S KL          G V      DSENESE VKPAKETI
Sbjct: 181 -------------ISKAFTTASSKLEK-------IGYV------DSENESEEVKPAKETI 240

Query: 241 NFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAP 300
           NFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPAP
Sbjct: 241 NFKEVKRVDHILASLQRK------------------------LPPAPPPPPFPEGYAPAP 255

Query: 301 TAETEKGPENQLGESQQPPADPIIDQGPAKRMKF 334
           TA+TEKGPENQ GESQQP ADPIIDQGPAKRMKF
Sbjct: 301 TADTEKGPENQQGESQQPSADPIIDQGPAKRMKF 255

[Close]

BLAST of ClCG07G013490 vs. ExPASy TrEMBL
Match: A0A1S3BHR9 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo OX=3656 GN=LOC103489986 PE=3 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 5.6e-112
Identity = 231/334 (69.16%), Postives = 234/334 (70.06%), Query Frame = 0


Query: 1   MATPPPP-TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPP TAPPG GNFE GP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFK 180
           MLTYYILDGSIYQAPQLCNVFAARV   + Y                             
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYY----------------------------- 180

Query: 181 VGEDRIWYLAIGDIFYALTIFSYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETI 240
                        I  A T  S KL          G V      DSENESE VKPAKETI
Sbjct: 181 -------------ISKAFTTASSKLEK-------IGYV------DSENESEEVKPAKETI 240

Query: 241 NFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAP 300
           NFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPAP
Sbjct: 241 NFKEVKRVDHILASLQRK------------------------LPPAPPPPPFPEGYAPAP 255

Query: 301 TAETEKGPENQLGESQQPPADPIIDQGPAKRMKF 334
           TA+TEKGPENQ GESQQP ADPIIDQGPAKRMKF
Sbjct: 301 TADTEKGPENQQGESQQPSADPIIDQGPAKRMKF 255

[Close]

BLAST of ClCG07G013490 vs. ExPASy TrEMBL
Match: A0A6J1D4P7 (Mediator of RNA polymerase II transcription subunit 6 OS=Momordica charantia OX=3673 GN=LOC111016983 PE=3 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 7.6e-109
Identity = 225/333 (67.57%), Postives = 226/333 (67.87%), Query Frame = 0


Query: 1   MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPP APPGI NFE GP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDW CNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKV 180
           LTYYILDGSIYQAPQLCNVFAARV   + Y                              
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYY------------------------------ 180

Query: 181 GEDRIWYLAIGDIFYALTIFSYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETIN 240
                       I  A T  S KL          G V      DSENESE VKP KETIN
Sbjct: 181 ------------ISKAFTTASSKLEK-------IGYV------DSENESEEVKPGKETIN 240

Query: 241 FKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT 300
           FKEVKRVDHILASLQRK                        LPPAPPPPPFPEGY PAPT
Sbjct: 241 FKEVKRVDHILASLQRK------------------------LPPAPPPPPFPEGYVPAPT 254

Query: 301 AETEKGPENQLGESQQPPADPIIDQGPAKRMKF 334
           AE EKGPENQ  E QQP ADPIIDQGPAKRMKF
Sbjct: 301 AEVEKGPENQPAELQQPSADPIIDQGPAKRMKF 254

[Close]

BLAST of ClCG07G013490 vs. ExPASy TrEMBL
Match: A0A6J1G911 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111452031 PE=3 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 4.3e-104
Identity = 220/333 (66.07%), Postives = 224/333 (67.27%), Query Frame = 0


Query: 1   MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPP    PPGIGNFE GP  AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPP----PPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKV 180
           LTYYILDGSIYQAPQLCNVFAARV   + Y                              
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYY------------------------------ 180

Query: 181 GEDRIWYLAIGDIFYALTIFSYKLHSEIKFWVLYGIVHSDKKFDSENESEGVKPAKETIN 240
                       I  A T  S KL          G V      DSENESE VKPAKETI+
Sbjct: 181 ------------ISKAFTTASSKLEK-------IGYV------DSENESEEVKPAKETID 240

Query: 241 FKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPT 300
           FKEVKRVD ILASLQRK                        LPPAPPPPPFPEGY PAP 
Sbjct: 241 FKEVKRVDRILASLQRK------------------------LPPAPPPPPFPEGYVPAPA 250

Query: 301 AETEKGPENQLGESQQPPADPIIDQGPAKRMKF 334
           +E EKGPE+Q GE QQP ADPIIDQGPAKRMKF
Sbjct: 301 SEAEKGPESQQGELQQPAADPIIDQGPAKRMKF 250

[Close]

BLAST of ClCG07G013490 vs. TAIR 10
Match: AT3G21350.2 (RNA polymerase transcriptional regulation mediator-related )

HSP 1 Score: 287.0 bits (733), Expect = 2.0e-77
Identity = 176/329 (53.50%), Postives = 202/329 (61.40%), Query Frame = 0


Query: 8   TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWAC 67
           TA    GN  D  +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD  C
Sbjct: 10  TADTFNGNAAD-QIPPPLQPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTC 69

Query: 68  NNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILD 127
           NNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILD
Sbjct: 70  NNEILRRRSIHPLDLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILD 129

Query: 128 GSIYQAPQLCNVFAARVFHLV-NYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIW 187
           GSIYQAPQLC+VFAARV   + N     T      A S +    + L  C   +    + 
Sbjct: 130 GSIYQAPQLCSVFAARVSRTIYNISKAFT-----DAASKLETIRQDLQVCLVAI----VL 189

Query: 188 YLAIGDIFYALTIFSYKLHSEIKFWVLYGIVHSDKKFDSENESEGV--KPAKETINFKEV 247
            L++    Y L IF    + E     +YG   +   FD+EN++E    KPA ET++ KE+
Sbjct: 190 SLSVNLGSYFLLIFKLMANGE----QVYGF--NKFLFDTENQNEPAESKPASETVDLKEM 249

Query: 248 KRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPTAETE 307
           KRVD IL SL RK                        L P PPPPPFPEGY        +
Sbjct: 250 KRVDVILTSLYRK------------------------LAPPPPPPPFPEGYVSQEALGEK 298

Query: 308 KGPENQLGESQQPPADPIIDQGPAKRMKF 334
           +    Q GESQ P  DPIIDQGPAKRMKF
Sbjct: 310 EELGTQGGESQPPQVDPIIDQGPAKRMKF 298

[Close]

BLAST of ClCG07G013490 vs. TAIR 10
Match: AT3G21350.1 (RNA polymerase transcriptional regulation mediator-related )

HSP 1 Score: 272.3 bits (695), Expect = 5.1e-73
Identity = 167/328 (50.91%), Postives = 188/328 (57.32%), Query Frame = 0


Query: 8   TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWAC 67
           TA    GN  D  +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD  C
Sbjct: 10  TADTFNGNAAD-QIPPPLQPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTC 69

Query: 68  NNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILD 127
           NNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILD
Sbjct: 70  NNEILRRRSIHPLDLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILD 129

Query: 128 GSIYQAPQLCNVFAARVFHLVNYHSGLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWY 187
           GSIYQAPQLC+VFAARV                                           
Sbjct: 130 GSIYQAPQLCSVFAARVSR----------------------------------------- 189

Query: 188 LAIGDIFYALTIFSYKLHSEIKFWVLYGIVHSDKKFDSENESEGV--KPAKETINFKEVK 247
             I +I  A T  + KL              + ++ D+EN++E    KPA ET++ KE+K
Sbjct: 190 -TIYNISKAFTDAASKL-------------ETIRQVDTENQNEPAESKPASETVDLKEMK 249

Query: 248 RVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPTAETEK 307
           RVD IL SL RK                        L P PPPPPFPEGY        ++
Sbjct: 250 RVDVILTSLYRK------------------------LAPPPPPPPFPEGYVSQEALGEKE 257

Query: 308 GPENQLGESQQPPADPIIDQGPAKRMKF 334
               Q GESQ P  DPIIDQGPAKRMKF
Sbjct: 310 ELGTQGGESQPPQVDPIIDQGPAKRMKF 257

The following BLAST results are available for this feature:

BLAST of ClCG07G013490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896808.1	1.1e-114	70.27	mediator of RNA polymerase II transcription subunit 6 [Benincasa hispida]	[more]
XP_004149176.2	4.0e-112	69.37	mediator of RNA polymerase II transcription subunit 6 [Cucumis sativus] >KGN5801...	[more]
XP_008447572.1	1.2e-111	69.16	PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cuc...	[more]
XP_022148297.1	1.6e-108	67.57	mediator of RNA polymerase II transcription subunit 6 [Momordica charantia]	[more]
XP_023524903.1	4.0e-104	66.07	mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pep...	[more]

BLAST of ClCG07G013490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IXJ7	2.8e-76	53.50	Mediator of RNA polymerase II transcription subunit 6 OS=Arabidopsis thaliana OX...	[more]
Q54PN3	2.1e-23	45.08	Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium ...	[more]
O75586	5.4e-19	42.98	Mediator of RNA polymerase II transcription subunit 6 OS=Homo sapiens OX=9606 GN...	[more]
Q921D4	5.4e-19	42.98	Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus OX=10090 G...	[more]
Q5RD94	5.4e-19	42.98	Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii OX=9601 GN...	[more]

BLAST of ClCG07G013490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8C2	1.9e-112	69.37	Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis sativus OX=3659...	[more]
A0A5D3CDR8	5.6e-112	69.16	Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo var. makuw...	[more]
A0A1S3BHR9	5.6e-112	69.16	Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1D4P7	7.6e-109	67.57	Mediator of RNA polymerase II transcription subunit 6 OS=Momordica charantia OX=...	[more]
A0A6J1G911	4.3e-104	66.07	Mediator of RNA polymerase II transcription subunit 6 OS=Cucurbita moschata OX=3...	[more]

BLAST of ClCG07G013490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21350.2	2.0e-77	53.50	RNA polymerase transcriptional regulation mediator-related	[more]
AT3G21350.1	5.1e-73	50.91	RNA polymerase transcriptional regulation mediator-related	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007018	Mediator complex, subunit Med6	PFAM	PF04934	Med6	coord: 35..148 e-value: 4.2E-37 score: 126.9
IPR007018	Mediator complex, subunit Med6	PANTHER	PTHR13104	MED-6-RELATED	coord: 17..258 coord: 280..333
IPR038566	Mediator complex, subunit Med6 superfamily	GENE3D	3.10.450.580	Mediator complex, subunit Med6	coord: 29..155 e-value: 1.3E-40 score: 140.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 288..333
None	No IPR available	PANTHER	PTHR13104:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6	coord: 17..258 coord: 280..333

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G013490.2	ClCG07G013490.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0003712	transcription coregulator activity