ClCG07G012540 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG07G012540
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr07: 28960946 .. 28962471 (-)
RNA-Seq ExpressionClCG07G012540
SyntenyClCG07G012540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTTGAATATTCAGCTAGACATGGGCTTGAATGGTGGGAAATTGACTTTGGTTGGTATGTTATTATATTTCTTCAAGCCATTGGAGTAGCCACTAACGTCAAAGTACCTTCTCAAACCCACAAGAAGAAGTTGGCGATGGATGAAAAAAAAAATCATATGAAAGCCTTCCAAAGTGATATCCTTTTACATAGGGATTAATATACACACTTCATGAATGTTTTAAAATGACACAAAATTATGGAGTTATCTCAAAAGAATAAATAAATATACTGTTACCAATTGAATATGAGTTAGATATATGCTCATATTGACACTTATATATAAATTAGTTACTATCTGTAAAAGAGATAAAAGTGTTATCAAACCATATACATTGGTAATATAGAATGAATATGTAATATTTAATGTTACAAACTTATTATTATGCTTCAATTTTCCTGAGAACATTTCAATTTTATTGAAAATTAGAAAGAGATCTTGCTTTCTTTAGTGAACAAACATAATTAACTAGCATTCGAACAGAGGCAAGGTGTGAGAAATCTTAGTCTATTGAATTCATAGTTTGTTTTGTTCTTGTGTAATTTGAGAAGTGTCTGGCAATTTAGGTTATCTTTTATGCTTTCAAATTTATAAAGTTTAAAACTATTTTCGAATTATTTGTTTTAAATAATATAAATTCTAAAAATAACTTTTTTTTTTTTAATGTTTTCTATGTATCAGATTTTAAGTTTTAAAATTTAAAATGTAGAAATATATTAAAAAGGTTAAAAAAAATATTTAGAAATATAGTATTTATGTTATAAACTCATTTCATTTATATCTAGATTATCTAAAAGGAGATTAAAAGGAGAAACATTGGATTTCCACTTTGTCCCTTTTAATTGATAGTTATAGGGATATATTATGTCATTTGTGTAATAAAGATTAAACAATTTGTTAGAGTTTTGTAGTTGGTAATGTTTCTTTAAGGTTAATTGTGTTGTTATGTGTTAGTGTAGGCTTGCCTCTGTAGTTGTCTCGTGGAATGTCTTAACATTTATGGTTTCNTATGTTCATGATCATTTGCACTTCTAAAGCAATATTTGACTTTAGGTTGGATTTTTTTCTTTTTATTATACTTATTAGGTTGATAAGATATGACTTAATCTACAAGTTATTTTTTCTTCTCTTTTGAAAGGATAATCTATAAGTTAAAAGCTTATTTAATTCTAATTTTCATTAGATGATTTATAGAGTACAAACCTATTTGAGATAATTAGGTGTGACTACTGATCTATCTACCTCTCGTACTTTGTCCAAAGCCTACGTAGAATAGTAAAGATATTGGGAAAAATATCATTATTATTGTCGAAAATCACATTTAGATTGGTAGGAAAGAAAAAGATGAGAAATCAAATTCTTTGTCTTGCAGGCTGTAAGGTTCGTAGTACTCTTGCACATAACATTTTTGGTGAATTCCGTATGTCATATATGGGAAAACGACCTTGGAAAACAAACGATTTGTCAACAAACAATTGGTAA

mRNA sequence

ATGCCTTTGAATATTCAGCTAGACATGGGCTTGAATGGTGGGAAATTGACTTTGGTTGGCTGTAAGGTTCGTAGTACTCTTGCACATAACATTTTTGGTGAATTCCGTATGTCATATATGGGAAAACGACCTTGGAAAACAAACGATTTGTCAACAAACAATTGGTAA

Coding sequence (CDS)

ATGCCTTTGAATATTCAGCTAGACATGGGCTTGAATGGTGGGAAATTGACTTTGGTTGGCTGTAAGGTTCGTAGTACTCTTGCACATAACATTTTTGGTGAATTCCGTATGTCATATATGGGAAAACGACCTTGGAAAACAAACGATTTGTCAACAAACAATTGGTAA

Protein sequence

MPLNIQLDMGLNGGKLTLVGCKVRSTLAHNIFGEFRMSYMGKRPWKTNDLSTNNW
Homology
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BLAST of ClCG07G012540 vs. NCBI nr
Match: KAG6575958.1 (Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.1 bits (131), Expect = 2.3e-04
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 0 

Query: 22  KVRSTLAHNIFGEFRMSYMGKRPWKTNDLSTNNW 56
           +VRS LA+NI+G+F + Y+GK+PW T DLS NNW
Sbjct: 129 EVRSELAYNIYGQFGLPYLGKQPWNTGDLSKNNW 162

The following BLAST results are available for this feature:
BLAST of ClCG07G012540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6575958.12.3e-0461.76Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic, partia... [more]
BLAST of ClCG07G012540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG07G012540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG07G012540 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G012540.1ClCG07G012540.1mRNA