ClCG07G011950 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G011950
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Transaldolase
Location	CG_Chr07: 28245029 .. 28245677 (-)
RNA-Seq Expression	ClCG07G011950
Synteny	ClCG07G011950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATTTCCAAGCTGTCCACTTCCATCTCTGCTCCTTCTCTATCCTCCTCTGTTAACCCGCGATCTTCCCTCTCCTCCAGCTCCTTCATCGCCTTCCGCCCCTCTTCTGACTTCTTCACCAAGCTCTCCGCGTCTAAATTGTCCCTTCACAGAGCTTCCGGTTTGAAGGGTTCCTTGGTGTACGTTTCTTTTTTTTTTTTTTTGTTGGTTTTGTGTGATTTTGATCGGTGGTTTGACGATTTTTCATTTTGGGTTTCTTTCTGTTTTTCTGGGGAGATCTGTTTGATGCTTATGTTTTGTCGACTTCTGCTTCGGTTTCTATGTATTTGATTTTGTTTTTCTGGTGATGGGTTTTTGATCATCTTATTTCAATTTTGTGCTCTCTTTTCTGGGTTAATGATGATTTATTTCTTGCTGTTTGAAAGACTGGTGTGGTAGAACTGCATTAGTAGGATCTGTAATTTCTCGCTGATTCTTAGATCTTAGTGTATCATCGTCTTGAATTGTTGGTTTGCTTTTCAGCTTGATGAATCTATCGTAGAATAGGATTGGTTTAATCCTTCTATAGAAGTTGCTTCTTGGATTTCTAGCTAATTTCTTACTGTGATTCAGTGTTCAGTTCTTGGAAATGATAATGATCTGA

mRNA sequence

ATGGCTTCCATTTCCAAGCTGTCCACTTCCATCTCTGCTCCTTCTCTATCCTCCTCTGTTAACCCGCGATCTTCCCTCTCCTCCAGCTCCTTCATCGCCTTCCGCCCCTCTTCTGACTTCTTCACCAAGCTCTCCGCGTCTAAATTGTCCCTTCACAGAGCTTCCGGTTTGAAGGGTTCCTTGGTTGTTCAGTTCTTGGAAATGATAATGATCTGA

Coding sequence (CDS)

ATGGCTTCCATTTCCAAGCTGTCCACTTCCATCTCTGCTCCTTCTCTATCCTCCTCTGTTAACCCGCGATCTTCCCTCTCCTCCAGCTCCTTCATCGCCTTCCGCCCCTCTTCTGACTTCTTCACCAAGCTCTCCGCGTCTAAATTGTCCCTTCACAGAGCTTCCGGTTTGAAGGGTTCCTTGGTTGTTCAGTTCTTGGAAATGATAATGATCTGA

Protein sequence

MASISKLSTSISAPSLSSSVNPRSSLSSSSFIAFRPSSDFFTKLSASKLSLHRASGLKGSLVVQFLEMIMI

Homology

[Close]

BLAST of ClCG07G011950 vs. NCBI nr
Match: KAA0044500.1 (transaldolase [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 4.8e-15
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 1  MASISKLSTSISAPSLSSSVNPRSSLSSSSFIAFRPSSDFFTKLSASKLSLHRASGLKGS 60
          MASISKLSTSIS+P+LSSSVNPRSSLSS SF+AFRPSSDFFTK SAS+LS+ R S LKGS
Sbjct: 1  MASISKLSTSISSPTLSSSVNPRSSLSSKSFVAFRPSSDFFTKFSASRLSVQRGSDLKGS 60

Query: 61 LVVQ 65
          LVV+
Sbjct: 61 LVVR 64

[Close]

BLAST of ClCG07G011950 vs. NCBI nr
Match: XP_008454148.1 (PREDICTED: transaldolase [Cucumis melo] >TYK29628.1 transaldolase [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 4.8e-15
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 1  MASISKLSTSISAPSLSSSVNPRSSLSSSSFIAFRPSSDFFTKLSASKLSLHRASGLKGS 60
          MASISKLSTSIS+P+LSSSVNPRSSLSS SF+AFRPSSDFFTK SAS+LS+ R S LKGS
Sbjct: 1  MASISKLSTSISSPTLSSSVNPRSSLSSKSFVAFRPSSDFFTKFSASRLSVQRGSDLKGS 60

Query: 61 LVVQ 65
          LVV+
Sbjct: 61 LVVR 64

[Close]

BLAST of ClCG07G011950 vs. NCBI nr
Match: XP_038877000.1 (transaldolase [Benincasa hispida])

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 54/64 (84.38%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1  MASISKLSTSISAPSLSSSVNPRSSLSSSSFIAFRPSSDFFTKLSASKLSLHRASGLKGS 60
          MASISKLSTSISAPSLSSSV  RSSLSS SFIAFRPSSDFFTK+SAS+LS+ R S LKGS
Sbjct: 1  MASISKLSTSISAPSLSSSVKSRSSLSSKSFIAFRPSSDFFTKVSASRLSVQRGSDLKGS 60

Query: 61 LVVQ 65
          LVV+
Sbjct: 61 LVVR 64

[Close]

BLAST of ClCG07G011950 vs. NCBI nr
Match: XP_022955732.1 (uncharacterized protein LOC111457643 [Cucurbita moschata] >KAG7018395.1 tal [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1  MASISKLSTSISAPSLSSSVNPRSSLSSSSFIAFRPSSDFFTKLSASKLSLHRASGLKGS 60
          MASIS LSTSISAPSLSSSVNPRSSLSS SFIAFRPSSDFF K+SAS+LS+ R S L+GS
Sbjct: 1  MASISNLSTSISAPSLSSSVNPRSSLSSKSFIAFRPSSDFFIKVSASRLSVRRGSDLRGS 60

Query: 61 LVVQ 65
          LVV+
Sbjct: 61 LVVR 64

[Close]

BLAST of ClCG07G011950 vs. NCBI nr
Match: KAG6581976.1 (hypothetical protein SDJN03_21978, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1  MASISKLSTSISAPSLSSSVNPRSSLSSSSFIAFRPSSDFFTKLSASKLSLHRASGLKGS 60
          MASIS LSTSISAPSLSSSVNPRSSLSS SFIAFRPSSDFF K+SAS+LS+ R S L+GS
Sbjct: 1  MASISNLSTSISAPSLSSSVNPRSSLSSKSFIAFRPSSDFFIKVSASRLSVRRGSDLRGS 60

Query: 61 LVVQ 65
          LVV+
Sbjct: 61 LVVR 64

[Close]

BLAST of ClCG07G011950 vs. ExPASy TrEMBL
Match: A0A5D3E1I6 (Transaldolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G002400 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.3e-15
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 1  MASISKLSTSISAPSLSSSVNPRSSLSSSSFIAFRPSSDFFTKLSASKLSLHRASGLKGS 60
          MASISKLSTSIS+P+LSSSVNPRSSLSS SF+AFRPSSDFFTK SAS+LS+ R S LKGS
Sbjct: 1  MASISKLSTSISSPTLSSSVNPRSSLSSKSFVAFRPSSDFFTKFSASRLSVQRGSDLKGS 60

Query: 61 LVVQ 65
          LVV+
Sbjct: 61 LVVR 64

[Close]

BLAST of ClCG07G011950 vs. ExPASy TrEMBL
Match: A0A5A7TMS5 (Transaldolase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002390 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.3e-15
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 1  MASISKLSTSISAPSLSSSVNPRSSLSSSSFIAFRPSSDFFTKLSASKLSLHRASGLKGS 60
          MASISKLSTSIS+P+LSSSVNPRSSLSS SF+AFRPSSDFFTK SAS+LS+ R S LKGS
Sbjct: 1  MASISKLSTSISSPTLSSSVNPRSSLSSKSFVAFRPSSDFFTKFSASRLSVQRGSDLKGS 60

Query: 61 LVVQ 65
          LVV+
Sbjct: 61 LVVR 64

[Close]

BLAST of ClCG07G011950 vs. ExPASy TrEMBL
Match: A0A1S3BYP7 (Transaldolase OS=Cucumis melo OX=3656 GN=LOC103494637 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.3e-15
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 1  MASISKLSTSISAPSLSSSVNPRSSLSSSSFIAFRPSSDFFTKLSASKLSLHRASGLKGS 60
          MASISKLSTSIS+P+LSSSVNPRSSLSS SF+AFRPSSDFFTK SAS+LS+ R S LKGS
Sbjct: 1  MASISKLSTSISSPTLSSSVNPRSSLSSKSFVAFRPSSDFFTKFSASRLSVQRGSDLKGS 60

Query: 61 LVVQ 65
          LVV+
Sbjct: 61 LVVR 64

[Close]

BLAST of ClCG07G011950 vs. ExPASy TrEMBL
Match: A0A6J1GUF1 (Transaldolase OS=Cucurbita moschata OX=3662 GN=LOC111457643 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1  MASISKLSTSISAPSLSSSVNPRSSLSSSSFIAFRPSSDFFTKLSASKLSLHRASGLKGS 60
          MASIS LSTSISAPSLSSSVNPRSSLSS SFIAFRPSSDFF K+SAS+LS+ R S L+GS
Sbjct: 1  MASISNLSTSISAPSLSSSVNPRSSLSSKSFIAFRPSSDFFIKVSASRLSVRRGSDLRGS 60

Query: 61 LVVQ 65
          LVV+
Sbjct: 61 LVVR 64

[Close]

BLAST of ClCG07G011950 vs. ExPASy TrEMBL
Match: A0A0A0KX30 (Transaldolase OS=Cucumis sativus OX=3659 GN=Csa_4G007670 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.4e-14
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1  MASISKLSTSISAPSLSSSVNPRSSLSSSSFIAFRPSSDFFTKLSASKLSLHRASGLKGS 60
          MASISKLST IS+P+LSSS NPRSSLSS+SF+AFRPSSDFFTKLSAS+LS+ R S LKGS
Sbjct: 1  MASISKLSTPISSPTLSSSFNPRSSLSSNSFLAFRPSSDFFTKLSASRLSVQRGSDLKGS 60

Query: 61 LVVQ 65
          L V+
Sbjct: 61 LFVR 64

The following BLAST results are available for this feature:

BLAST of ClCG07G011950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044500.1	4.8e-15	82.81	transaldolase [Cucumis melo var. makuwa]	[more]
XP_008454148.1	4.8e-15	82.81	PREDICTED: transaldolase [Cucumis melo] >TYK29628.1 transaldolase [Cucumis melo ...	[more]
XP_038877000.1	2.4e-14	84.38	transaldolase [Benincasa hispida]	[more]
XP_022955732.1	2.4e-14	82.81	uncharacterized protein LOC111457643 [Cucurbita moschata] >KAG7018395.1 tal [Cuc...	[more]
KAG6581976.1	2.4e-14	82.81	hypothetical protein SDJN03_21978, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG07G011950 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG07G011950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1I6	2.3e-15	82.81	Transaldolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G002400...	[more]
A0A5A7TMS5	2.3e-15	82.81	Transaldolase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002390 ...	[more]
A0A1S3BYP7	2.3e-15	82.81	Transaldolase OS=Cucumis melo OX=3656 GN=LOC103494637 PE=3 SV=1	[more]
A0A6J1GUF1	1.2e-14	82.81	Transaldolase OS=Cucurbita moschata OX=3662 GN=LOC111457643 PE=3 SV=1	[more]
A0A0A0KX30	4.4e-14	79.69	Transaldolase OS=Cucumis sativus OX=3659 GN=Csa_4G007670 PE=3 SV=1	[more]

BLAST of ClCG07G011950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G011950.1	ClCG07G011950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0009809	lignin biosynthetic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009749	response to glucose
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0004801	transaldolase activity