ClCG07G006780 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G006780
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CG_Chr07: 13618498 .. 13620533 (+)
RNA-Seq Expression	ClCG07G006780
Synteny	ClCG07G006780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTTCTCTTTTAGAATGTATCAAAGCAAGACTCTTGATGAAAATTTAGATGAGTTCAAGAAATTGACCAATGCCTTCAATCAGGAGCGGAAAGTGAGGCTTCAGGCTGCTATTCTCATTAATTCGATCCATGATTCCTACAAAGAAGTAAAAACAACTTACAGTACGGAAGGGAAAATATCACTGTGAATTCAGTCATTACAACATTAAAGAGCAAAGAGTTAGAGCTGAAAACAGAGAACAAGATCTCTAGTGGAGCAGAATCTCTCTGTTCAAAGGGAAACAATCATTTCAAAAGAAGCCACAACAATAAAAGCCAAAGAATGAATAAAGACAAGTCTGTGTGAAAGTGCTTCATATGCCACAAAGGACATTTCAAAAGAAATTATCCTGAAAGGGGAAAAAAATTAGAAGAGAAGACAACAGAAGATATAGGCCTTATGGCAAAGAAGATACCAACAGAAATAGAGACTTCAGAAGAGAGGATCCTAGAAGGGTGAGAGAGCATGGAAGAAACCATGGATCTGTTGGAGATGAGGCTTTCAAATACCCAAAAGTTCATGGAACTTGAGATTGAGGAGGAAGATTGGGTTTTAGACTCATGATGCACTTACCACATGACAGCCAAAAGGGACTGGTTTGTTGAATACAAATCAAAAGTGGGAGACTCAGTCTACATGGACAATAATCATGAGTGTGAGATTATTAGTACAGGCTCAATGTTATTGAAGCTCTCAGACAACAGGGAGGTTCTCCTTAAAGGAGTGAGACATGCTCCAAAATTAAATAGAAACCTCATCTCTTTAGGTATGCTTGATGATTTAGGCTGCTCTATTCATGCTGAGAAGGGGTGCTTGGAAATATTGAAACATGGCAGGGCAATACTCACAGCAAAAAAGAGAGAACGGTTGTATATTGTGATAAATGTGAATAGACCGAAATATGCATTGATATCTTACTCTGAAAGGAATAGTGAATTAGAATTGTGGCATCAAAGACTCTCACACATCAGTGAAAGGGGCCTAGATGAATTGCTAAAGTAAGGGCTAATTCAAGCTCGAGGTCACTAAAGGACTTAGCTTCTGAGAGCATTGCACTTATGGCAAGTCAAAGCGGCAAAAATTCTCGAAAGGAGAACACTTTTCAAGAGCAATACTTGACTATGTACATGGAGATCTTTGGGGACCAGCTGAAAATCTATCTTGGGAGGTTCCAAGTATTTTCTATCCCTAATGGATGATTATTCAAGAAAAGTTTGGACCCATCCTTTACGATCCAAAGATCAGACTTTTGAATACTTTAAAATCTGGAAAAACGAGGTTGAAACTCAAACTGAGAAGAATATTAAATACCCGAGAACTTATAACGGTCTAGAGTTCCTAAGTAATGAATTTAACTCTCTATGCAATGAGTTTGACATATCTAGACACAAAACAATGGCTTACACTCCCCAACAAAATGGGGTTGTTGAAAGGATGAACAGAACCTTGATAGAAACAGTACAATGCATGATTTTTTAAGCAAAAATTTCTAAAAATTTATAGGTCGAAGCATTAGCCACTGCCACCTACACAGTAAATAGAGTCCTATGTGTTTCTATTGAGATGAAGACCCTTGAAAAAAGATGGACTGGTGTATCTCCTAATCTTTCTCATCTAAGAACTTTTGGGTGTATCGCCTATGTTTATATAAAACAAGGAAAAACAGAACCAAGGGCTCTCAAATGTATGTTCATAGGCTAACATGAAGGAGTAAAAGACTACTAGTTCTAGGATTTCACCAAAAACAGAAGCTTAATTAACAAATATGTTGTCTTCAAGGAGAATGAACTTTTTATGGAATAGGAAAAAAATGAAGCAGCCTATTGAACAAAAACAGAGTAAATCTTCTACAAGCTATCAAGTAGAACTTCACTCAAGGAAATCATCACAAATCCTAACCCTGGTAATGATCAATTAGCTGAAACTTTACATAGCTCTCAATCTCAAGAAGGAGTATACGGAGAGCTTCTTTCCATGACGCACAAAAGATGA

mRNA sequence

ATGCTTTTCTCTTTTAGAATGTATCAAAGCAAGACTCTTGATGAAAATTTAGATGAGTTCAAGAAATTGACCAATGCCTTCAATCAGGAGCGGAAAGTGAGGCTTCAGGCTGCTATTCTCATTAATTCGATCCATGATTCCTACAAAGAAAGCAAAGAGTTAGAGCTGAAAACAGAGAACAAGATCTCTAGTGGAGCAGAATCTCTCTGTTCAAAGGGAAACAATCATTTCAAAAGAAGCCACAACAATAAAAGCCAAAGAATGAATAAAGACAAAAATTATCCTGAAAGGGGAAAAAAATTAGAAGAGAAGACAACAGAAGATATAGGCCTTATGGCAAAGAAGATACCAACAGAAATAGAGACTTCAGAAGAGAGGATCCTAGAAGGGGACTGGTTTGTTGAATACAAATCAAAAGTGGGAGACTCAGTCTACATGGACAATAATCATGAGTGTGAGATTATTAGTACAGGCTCAATGTTATTGAAGCTCTCAGACAACAGGGAGGTTCTCCTTAAAGGAGTGAGACATGCTCCAAAATTAAATAGAAACCTCATCTCTTTAGGTATGCTTGATGATTTAGGCTGCTCTATTCATGCTGAGAAGGGGTGCTTGGAAATATTGAAACATGGCAGGGCAATACTCACAGCAAAAAAGAGAGAACGGTTGTATATTGTGATAAATGTGAATAGACCGAAATATGCATTGATATCTTACTCTGAAAGGAATATAAGGGCTAATTCAAGCTCGAGGTCACTAAAGGACTTAGCTTCTGAGAGCATTGCACTTATGGCAAGTCAAAGCGGCAAAAATTCTCGAAAGGAGAACACTTTTCAAGAGCAATACTTGACTATGTACATGGAGATCTTTGGGGACCAGCTGAAAATCTATCTTGGGAGGTTCCAAACTTTTGAATACTTTAAAATCTGGAAAAACGAGGTTGAAACTCAAACTGAGAAGAATATTAAATACCCGAGAACTTATAACGGTCTAGAGTTCCTAAGTAATGAATTTAACTCTCTATGCAATGAGTTTGACATATCTAGACACAAAACAATGGCTTACACTCCCCAACAAAATGGGGTTGTTGAAAGGATGAACAGAACCTTGATAGAAACAGTCGAAGCATTAGCCACTGCCACCTACACAGTAAATAGAGTCCTATGTGTTTCTATTGAGATGAAGACCCTTGAAAAAAGATGGACTGGTGAAATCATCACAAATCCTAACCCTGGTAATGATCAATTAGCTGAAACTTTACATAGCTCTCAATCTCAAGAAGGAGTATACGGAGAGCTTCTTTCCATGACGCACAAAAGATGA

Coding sequence (CDS)

ATGCTTTTCTCTTTTAGAATGTATCAAAGCAAGACTCTTGATGAAAATTTAGATGAGTTCAAGAAATTGACCAATGCCTTCAATCAGGAGCGGAAAGTGAGGCTTCAGGCTGCTATTCTCATTAATTCGATCCATGATTCCTACAAAGAAAGCAAAGAGTTAGAGCTGAAAACAGAGAACAAGATCTCTAGTGGAGCAGAATCTCTCTGTTCAAAGGGAAACAATCATTTCAAAAGAAGCCACAACAATAAAAGCCAAAGAATGAATAAAGACAAAAATTATCCTGAAAGGGGAAAAAAATTAGAAGAGAAGACAACAGAAGATATAGGCCTTATGGCAAAGAAGATACCAACAGAAATAGAGACTTCAGAAGAGAGGATCCTAGAAGGGGACTGGTTTGTTGAATACAAATCAAAAGTGGGAGACTCAGTCTACATGGACAATAATCATGAGTGTGAGATTATTAGTACAGGCTCAATGTTATTGAAGCTCTCAGACAACAGGGAGGTTCTCCTTAAAGGAGTGAGACATGCTCCAAAATTAAATAGAAACCTCATCTCTTTAGGTATGCTTGATGATTTAGGCTGCTCTATTCATGCTGAGAAGGGGTGCTTGGAAATATTGAAACATGGCAGGGCAATACTCACAGCAAAAAAGAGAGAACGGTTGTATATTGTGATAAATGTGAATAGACCGAAATATGCATTGATATCTTACTCTGAAAGGAATATAAGGGCTAATTCAAGCTCGAGGTCACTAAAGGACTTAGCTTCTGAGAGCATTGCACTTATGGCAAGTCAAAGCGGCAAAAATTCTCGAAAGGAGAACACTTTTCAAGAGCAATACTTGACTATGTACATGGAGATCTTTGGGGACCAGCTGAAAATCTATCTTGGGAGGTTCCAAACTTTTGAATACTTTAAAATCTGGAAAAACGAGGTTGAAACTCAAACTGAGAAGAATATTAAATACCCGAGAACTTATAACGGTCTAGAGTTCCTAAGTAATGAATTTAACTCTCTATGCAATGAGTTTGACATATCTAGACACAAAACAATGGCTTACACTCCCCAACAAAATGGGGTTGTTGAAAGGATGAACAGAACCTTGATAGAAACAGTCGAAGCATTAGCCACTGCCACCTACACAGTAAATAGAGTCCTATGTGTTTCTATTGAGATGAAGACCCTTGAAAAAAGATGGACTGGTGAAATCATCACAAATCCTAACCCTGGTAATGATCAATTAGCTGAAACTTTACATAGCTCTCAATCTCAAGAAGGAGTATACGGAGAGCTTCTTTCCATGACGCACAAAAGATGA

Protein sequence

MLFSFRMYQSKTLDENLDEFKKLTNAFNQERKVRLQAAILINSIHDSYKESKELELKTENKISSGAESLCSKGNNHFKRSHNNKSQRMNKDKNYPERGKKLEEKTTEDIGLMAKKIPTEIETSEERILEGDWFVEYKSKVGDSVYMDNNHECEIISTGSMLLKLSDNREVLLKGVRHAPKLNRNLISLGMLDDLGCSIHAEKGCLEILKHGRAILTAKKRERLYIVINVNRPKYALISYSERNIRANSSSRSLKDLASESIALMASQSGKNSRKENTFQEQYLTMYMEIFGDQLKIYLGRFQTFEYFKIWKNEVETQTEKNIKYPRTYNGLEFLSNEFNSLCNEFDISRHKTMAYTPQQNGVVERMNRTLIETVEALATATYTVNRVLCVSIEMKTLEKRWTGEIITNPNPGNDQLAETLHSSQSQEGVYGELLSMTHKR

Homology

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BLAST of ClCG07G006780 vs. NCBI nr
Match: KAA0054988.1 (hypothetical protein E6C27_scaffold43052G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 2.3e-43
Identity = 168/464 (36.21%), Postives = 224/464 (48.28%), Query Frame = 0


Query: 18  DEFKKLTNAFNQERK---VRLQAAILINSIHDSYKE----------------------SK 77
           +EFKKLTNAFNQ  +      +AAILINSIHD+YKE                      S+
Sbjct: 84  NEFKKLTNAFNQTGEKLGAESEAAILINSIHDTYKEVKIALKYGREIITVNLVITALKSE 143

Query: 78  ELELKTENKISSGAESLCSKGNNHFKRSHNNKSQRMNKDK---------------NYPER 137
           ELELKTENK S+ AESL  KG N F R ++NK+QR ++DK               N P+R
Sbjct: 144 ELELKTENKTSNAAESLFPKGKNSF-RKNSNKNQRSSRDKPALKCFICHKGHFKRNCPDR 203

Query: 138 GKKL---EEKTTEDIGLMAKKIPTEIETSEERILEGDWFVEYKSKVGDSVYMDNNHECEI 197
           GK     E +     G          +  + R   G         VG+  +       E+
Sbjct: 204 GKNFRRDENRRYRPYGREDFNRNRNYQREDRR--RGREHGRDHGPVGNEAF----EYTEL 263

Query: 198 IST---GSMLLKLSDNREVLLKG-------------VRHAPKLNRNLISLGMLDDLGCSI 257
           ++T    +M +K  +   VL  G              RH PKL RNLISLGMLDDLGC I
Sbjct: 264 LTTTNKRTMEIKTEEEDWVLDSGCTYHMTSKKNWLSARHVPKLKRNLISLGMLDDLGCFI 323

Query: 258 HAEKGCLEILKHGRAILTAKKRERLYIVINVNRPKYALISYSERNIRANSSSRSLKDLAS 317
           + E+G +++ + GR IL ++K E LY V NV +PKYALIS +E+        + L  ++ 
Sbjct: 324 YIERGFMKVERQGRVILNSRKVEDLYTVKNVIKPKYALISETEKENELELWHQRLSHISE 383

Query: 318 ESIALMASQSGKNSR--KENTFQEQYLTMYMEIFGDQLKIYLGRFQTFEYFKIWKNEVET 377
           + +  +       +R  K   F E        IFG   ++           K  K E  T
Sbjct: 384 KGLTELQKHGLIQTRGVKRLGFCEHC------IFGKSKRL-----------KFSKGEHHT 443

Query: 378 QTEKNIKYPRTYNGLEFLSNEF--NSLCNEFDISRHKTMAYTPQQNGVVERMNRTLIETV 404
           +             L+++  +    +  + +  SRH+T+AYTPQQNGV ERMNRTL+E V
Sbjct: 444 KAT-----------LDYVHGDLWGPARTHSWGGSRHRTVAYTPQQNGVAERMNRTLMERV 503

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BLAST of ClCG07G006780 vs. NCBI nr
Match: KAA0039651.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] >TYJ95535.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 182.6 bits (462), Expect = 7.5e-42
Identity = 120/292 (41.10%), Postives = 161/292 (55.14%), Query Frame = 0


Query: 106 TEDIGLMAKKIPTEIETSEERILEGD---------------------WFVEYKSKVGDSV 165
           TEDI LMA+K   E E  +E+I E +                     WFV+YKS+ GDSV
Sbjct: 3   TEDIDLMAEKTSIETEIIKEKIKEEEENMEVITGLVDVPYHITSKKNWFVDYKSQEGDSV 62

Query: 166 YMDNNHECEIISTGSMLLKLSDNREVLLKGVRHAPKLNRNLISLGMLDDLGCSIHAEKGC 225
           YM NN +CEII  GS+LLKLS+NREVLLKGVRH PKL RNLISLGMLDDLGC I+ E+G 
Sbjct: 63  YMGNNQDCEIIGIGSVLLKLSNNREVLLKGVRHVPKLKRNLISLGMLDDLGCFIYIERGF 122

Query: 226 LEILKHGRAILTAKKRERLYIVINVNRPKYALISYSERNIRANSSSRSLKDLASESIALM 285
           +++ + G+ IL ++K E LY V NV +PKYALIS +E+  +     R L  ++ + +  +
Sbjct: 123 MKVERQGKVILNSRKVEGLYTVKNVIKPKYALISETEKGNKLELWHRRLSHISEKGLTEL 182

Query: 286 ASQSGKNSR--KENTFQEQYLTMYMEIFGDQLKIYLGRFQTFEYFKIWKNEVETQTEKNI 345
             Q    +R  K   F E  +                 F   +  K  K E  ++     
Sbjct: 183 QKQGLIQARGVKNLGFCEDCI-----------------FSKSKRLKFSKGEHHSKVT--- 242

Query: 346 KYPRTYNGLEFLSNEF--NSLCNEFDISRHKTMAYTPQQNGVVERMNRTLIE 373
                   L+++  +    +  N +  SRH+T+AYTPQQNGV E MNRTL+E
Sbjct: 243 --------LDYVHGDLCGPARTNSWGGSRHRTVAYTPQQNGVAEMMNRTLME 266

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BLAST of ClCG07G006780 vs. NCBI nr
Match: KAA0045569.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 9.8e-42
Identity = 159/429 (37.06%), Postives = 194/429 (45.22%), Query Frame = 0


Query: 7   MYQSKTLDENLDEFKKLTNAFNQERK---VRLQAAILINSIHDSYKESKELELKTENKIS 66
           M ++K LDENLDEFKKLTNA NQ  +      +AAILIN IHD+YKE K + L+ +N   
Sbjct: 55  MEENKNLDENLDEFKKLTNALNQTEEKMGAESEAAILINLIHDTYKEVK-IALEGKNFRR 114

Query: 67  SGAESLCSKGNNHFKRSHNNKSQRMNKDKNY-PERGKKLEE--KTTEDIGLMAKKIPTEI 126
                    G   F ++ N + +   K + +  + G    E  K TE +    +K   EI
Sbjct: 115 DKNIRYRPYGRKDFNQNRNYQREDRRKGREHGSDHGPVGNEAFKYTEALAATNEK-AMEI 174

Query: 127 ETSEER-ILEG----------DWFVEYKSKVGDSVYMDNNHECEIISTGSMLLKLSDNRE 186
           ET EE  +L+           +WFV+YKS+  DS+YM NN +CEII  G +LLKLS+NRE
Sbjct: 175 ETEEEDWVLDSRCTYHMTSKKNWFVDYKSQAEDSIYMGNNQDCEII--GLVLLKLSNNRE 234

Query: 187 VLLKGVRHAPKLNRNLISLGMLDDLGCSIHAEKGCLEILKHGRAILTAKKRERLYIVINV 246
           VLLKGVRH PKL RNLISLG         H  K  L+ + HG     A+           
Sbjct: 235 VLLKGVRHVPKLKRNLISLGE--------HRSKATLDYV-HGDLWGPARTHS-------- 294

Query: 247 NRPKYALISYSERNIRANSSSRSLKDLASESIALMASQSGKNSRKENTFQEQYLTMYMEI 306
                                                                       
Sbjct: 295 ------------------------------------------------------------ 354

Query: 307 FGDQLKIYLGRFQTFEYFKIWKNEVETQTEKNIKYPRTYNGLEFLSNEFNSLCNEFDISR 366
                               W               RT N LEFLSN+FN LCNEF IS+
Sbjct: 355 --------------------WGGS------------RTDNALEFLSNDFNFLCNEFGISK 370

Query: 367 HKTMAYTPQQNGVVERMNRTLIETV---------------EALATATYTVNRVLCVSIEM 404
           H  +AYTPQQN V ERMNRTL+E V               EALA ATYTVNR LCVSI+ 
Sbjct: 415 HIIVAYTPQQNKVAERMNRTLMERVKCMILEAKISEHFWAEALAIATYTVNRSLCVSIDA 370

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BLAST of ClCG07G006780 vs. NCBI nr
Match: KAA0062924.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] >TYK16419.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-40
Identity = 118/275 (42.91%), Postives = 157/275 (57.09%), Query Frame = 0


Query: 146 MDNNHECEIISTGSMLLKLSDNREVLLKGVRHAPKLNRNLISLGMLDDLGCSIHAEKGCL 205
           M NN  CEII   S+LLKLS+NREVLLKGVRH PKL R+LISLGM+DDLGC I+ EKG +
Sbjct: 1   MGNNRYCEIIGVSSVLLKLSNNREVLLKGVRHVPKLKRHLISLGMIDDLGCFIYIEKGSM 60

Query: 206 EILKHGRAILTAKKRERLYIVINVNRPKYALISYSERNIRANSSSRSLKDLASESIALMA 265
           ++ + GR IL ++K E LYIV NV +PKYALIS +E+        R L  ++ + +  + 
Sbjct: 61  KVERQGRVILNSRKVEGLYIVKNVIKPKYALISETEKGNELELWHRRLSHISEKGLTELQ 120

Query: 266 SQSGKNSRKENTFQEQYLTMYMEIFGDQLKIYLGRFQTFEYFKIWKNEVETQTEKNIKYP 325
            Q    +R+            ++ FG       G+ +  ++ K   +   T         
Sbjct: 121 KQRLIQARE------------VKRFGFCEHCIFGKSKRLKFSKGQHHSKAT--------- 180

Query: 326 RTYNGLEFLSNEF--NSLCNEFDISRHKTMAYTPQQNGVVERMNRTLIETV--------- 385
                L ++  +    +  + +  SRH+T+AYT QQNGV ERMNRTL+E V         
Sbjct: 181 -----LGYVHGDLWGPARTHSWRGSRHRTVAYTLQQNGVAERMNRTLMERVRCMISEAKI 240

Query: 386 ------EALATATYTVNRVLCVSIEMKTLEKRWTG 404
                 EALATATYTVNR  CVSI+MKT E+RWTG
Sbjct: 241 SENFWAEALATATYTVNRSPCVSIDMKTPEERWTG 249

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BLAST of ClCG07G006780 vs. NCBI nr
Match: KAA0056038.1 (hypothetical protein E6C27_scaffold319G001970 [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 3.5e-39
Identity = 117/273 (42.86%), Postives = 132/273 (48.35%), Query Frame = 0


Query: 146 MDNNHECEIISTGSMLLKLSDNREVLLKGVRHAPKLNRNLISLGMLDDLGCSIHAEKGCL 205
           M NN +CEII   S+LLKLS+NREVLLK VRH PKL RNLISLG                
Sbjct: 1   MGNNQDCEIIGVSSVLLKLSNNREVLLKEVRHVPKLKRNLISLG---------------- 60

Query: 206 EILKHGRAILTAKKRERLYIVINVNRPKYALISYSERNIRANSSSRSLKDLASESIALMA 265
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 266 SQSGKNSRKENTFQEQYLTMYMEIFGDQLKIYLGRFQTFEYFKIWKNEVETQTEKNIKYP 325
                         E +   YM IFGDQL++ LG  Q          +VETQTE+ IK+ 
Sbjct: 121 --------------EHHSKAYMVIFGDQLELILGVDQV---------KVETQTERKIKFL 174

Query: 326 RTYNGLEFLSNEFNSLCNEFDISRHKTMAYTPQQNGVVERMNRTLIETV----------- 385
           RT NGLEFLSN+FN LCNEF ISRH+T+AYTPQQNGV ERMNRTL+E V           
Sbjct: 181 RTDNGLEFLSNDFNFLCNEFGISRHRTVAYTPQQNGVAERMNRTLMERVRCMVSDAKISE 174

Query: 386 ----EALATATYTVNRVLCVSIEMKTLEKRWTG 404
               EALATATYTVNR  CVSI+MKT E+RWTG
Sbjct: 241 NFWAEALATATYTVNRSPCVSIDMKTPEERWTG 174

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BLAST of ClCG07G006780 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.4e-14
Identity = 89/338 (26.33%), Postives = 140/338 (41.42%), Query Frame = 0


Query: 131 DWFVEYKSKVGDSVYMDNNHECEIISTGSMLLKLSDNREVLLKGVRHAPKLNRNLISLGM 190
           D F  Y +    +V M N    +I   G + +K +    ++LK VRH P L  NLIS   
Sbjct: 309 DLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIA 368

Query: 191 LDDLGCSIH-------AEKGCLEILKH-GRAILTAKKRERLYIVINVNRPKYALISYSER 250
           LD  G   +         KG L I K   R  L     E     +N  + + ++  + +R
Sbjct: 369 LDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKR 428

Query: 251 NIRANSSSRSLKDLASESIALMASQS----------GKNSRK------------------ 310
               + S + L+ LA +S+   A  +          GK  R                   
Sbjct: 429 --MGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYS 488

Query: 311 --------ENTFQEQYLTMYMEIFGDQLKIYL--GRFQTFEYFKIWKNEVETQTEKNIKY 370
                   E+    +Y   +++    +L +Y+   + Q F+ F+ +   VE +T + +K 
Sbjct: 489 DVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKR 548

Query: 371 PRTYNGLEFLSNEFNSLCNEFDISRHKTMAYTPQQNGVVERMNRTLIETV---------- 408
            R+ NG E+ S EF   C+   I   KT+  TPQ NGV ERMNRT++E V          
Sbjct: 549 LRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLP 608

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BLAST of ClCG07G006780 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 60.5 bits (145), Expect = 5.6e-08
Identity = 104/457 (22.76%), Postives = 185/457 (40.48%), Query Frame = 0


Query: 11  KTLDENLDEFKKLTNAFNQERKVRLQAAILINSI---HDSYKESKELELKTENKISSGAE 70
           K  +++ D  KK+ NA         +  +  N +      +K + + ++K  +    G E
Sbjct: 182 KIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHH---CGRE 241

Query: 71  SLCSKGNNHFKRSHNNKSQRMNKDKNYPERGKKLEEKTTEDIGLMAKKI-PTEIETSEER 130
               K   H+KR  NNK++         E  K+++  T+  I  M K++  T +  +   
Sbjct: 242 GHIKKDCFHYKRILNNKNK---------ENEKQVQTATSHGIAFMVKEVNNTSVMDNCGF 301

Query: 131 ILE---GDWFVEYKSKVGDSVYMDNNHECEIISTGSM-------LLKLSDNREVLLKGVR 190
           +L+    D  +  +S   DSV +    +  +   G         +++L ++ E+ L+ V 
Sbjct: 302 VLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDVL 361

Query: 191 HAPKLNRNLISLGMLDDLGCSIHAEKGCLEILKHGRAILTAKKRERLYIVINVNRPKYAL 250
              +   NL+S+  L + G SI  +K  + I K+G  ++  K    L  V  +N   Y++
Sbjct: 362 FCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNG--LMVVKNSGMLNNVPVINFQAYSI 421

Query: 251 ISYSERNIR------ANSSSRSL-----KDLASESIALMASQ----------SGKNSR-- 310
            +  + N R       + S   L     K++ S+   L   +          +GK +R  
Sbjct: 422 NAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLP 481

Query: 311 ----KENTF----------------------QEQYLTMYMEIFGDQLKIYLGRFQT--FE 370
               K+ T                        + Y  ++++ F      YL ++++  F 
Sbjct: 482 FKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFS 541

Query: 371 YFKIWKNEVETQTEKNIKYPRTYNGLEFLSNEFNSLCNEFDISRHKTMAYTPQQNGVVER 388
            F+ +  + E      + Y    NG E+LSNE    C +  IS H T+ +TPQ NGV ER
Sbjct: 542 MFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSER 601

[Close]

BLAST of ClCG07G006780 vs. ExPASy TrEMBL
Match: A0A5A7UJ23 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G001360 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-43
Identity = 168/464 (36.21%), Postives = 224/464 (48.28%), Query Frame = 0


Query: 18  DEFKKLTNAFNQERK---VRLQAAILINSIHDSYKE----------------------SK 77
           +EFKKLTNAFNQ  +      +AAILINSIHD+YKE                      S+
Sbjct: 84  NEFKKLTNAFNQTGEKLGAESEAAILINSIHDTYKEVKIALKYGREIITVNLVITALKSE 143

Query: 78  ELELKTENKISSGAESLCSKGNNHFKRSHNNKSQRMNKDK---------------NYPER 137
           ELELKTENK S+ AESL  KG N F R ++NK+QR ++DK               N P+R
Sbjct: 144 ELELKTENKTSNAAESLFPKGKNSF-RKNSNKNQRSSRDKPALKCFICHKGHFKRNCPDR 203

Query: 138 GKKL---EEKTTEDIGLMAKKIPTEIETSEERILEGDWFVEYKSKVGDSVYMDNNHECEI 197
           GK     E +     G          +  + R   G         VG+  +       E+
Sbjct: 204 GKNFRRDENRRYRPYGREDFNRNRNYQREDRR--RGREHGRDHGPVGNEAF----EYTEL 263

Query: 198 IST---GSMLLKLSDNREVLLKG-------------VRHAPKLNRNLISLGMLDDLGCSI 257
           ++T    +M +K  +   VL  G              RH PKL RNLISLGMLDDLGC I
Sbjct: 264 LTTTNKRTMEIKTEEEDWVLDSGCTYHMTSKKNWLSARHVPKLKRNLISLGMLDDLGCFI 323

Query: 258 HAEKGCLEILKHGRAILTAKKRERLYIVINVNRPKYALISYSERNIRANSSSRSLKDLAS 317
           + E+G +++ + GR IL ++K E LY V NV +PKYALIS +E+        + L  ++ 
Sbjct: 324 YIERGFMKVERQGRVILNSRKVEDLYTVKNVIKPKYALISETEKENELELWHQRLSHISE 383

Query: 318 ESIALMASQSGKNSR--KENTFQEQYLTMYMEIFGDQLKIYLGRFQTFEYFKIWKNEVET 377
           + +  +       +R  K   F E        IFG   ++           K  K E  T
Sbjct: 384 KGLTELQKHGLIQTRGVKRLGFCEHC------IFGKSKRL-----------KFSKGEHHT 443

Query: 378 QTEKNIKYPRTYNGLEFLSNEF--NSLCNEFDISRHKTMAYTPQQNGVVERMNRTLIETV 404
           +             L+++  +    +  + +  SRH+T+AYTPQQNGV ERMNRTL+E V
Sbjct: 444 KAT-----------LDYVHGDLWGPARTHSWGGSRHRTVAYTPQQNGVAERMNRTLMERV 503

[Close]

BLAST of ClCG07G006780 vs. ExPASy TrEMBL
Match: A0A5D3BAM8 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00260 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.6e-42
Identity = 120/292 (41.10%), Postives = 161/292 (55.14%), Query Frame = 0


Query: 106 TEDIGLMAKKIPTEIETSEERILEGD---------------------WFVEYKSKVGDSV 165
           TEDI LMA+K   E E  +E+I E +                     WFV+YKS+ GDSV
Sbjct: 3   TEDIDLMAEKTSIETEIIKEKIKEEEENMEVITGLVDVPYHITSKKNWFVDYKSQEGDSV 62

Query: 166 YMDNNHECEIISTGSMLLKLSDNREVLLKGVRHAPKLNRNLISLGMLDDLGCSIHAEKGC 225
           YM NN +CEII  GS+LLKLS+NREVLLKGVRH PKL RNLISLGMLDDLGC I+ E+G 
Sbjct: 63  YMGNNQDCEIIGIGSVLLKLSNNREVLLKGVRHVPKLKRNLISLGMLDDLGCFIYIERGF 122

Query: 226 LEILKHGRAILTAKKRERLYIVINVNRPKYALISYSERNIRANSSSRSLKDLASESIALM 285
           +++ + G+ IL ++K E LY V NV +PKYALIS +E+  +     R L  ++ + +  +
Sbjct: 123 MKVERQGKVILNSRKVEGLYTVKNVIKPKYALISETEKGNKLELWHRRLSHISEKGLTEL 182

Query: 286 ASQSGKNSR--KENTFQEQYLTMYMEIFGDQLKIYLGRFQTFEYFKIWKNEVETQTEKNI 345
             Q    +R  K   F E  +                 F   +  K  K E  ++     
Sbjct: 183 QKQGLIQARGVKNLGFCEDCI-----------------FSKSKRLKFSKGEHHSKVT--- 242

Query: 346 KYPRTYNGLEFLSNEF--NSLCNEFDISRHKTMAYTPQQNGVVERMNRTLIE 373
                   L+++  +    +  N +  SRH+T+AYTPQQNGV E MNRTL+E
Sbjct: 243 --------LDYVHGDLCGPARTNSWGGSRHRTVAYTPQQNGVAEMMNRTLME 266

[Close]

BLAST of ClCG07G006780 vs. ExPASy TrEMBL
Match: A0A5A7TWF0 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00700 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.8e-42
Identity = 159/429 (37.06%), Postives = 194/429 (45.22%), Query Frame = 0


Query: 7   MYQSKTLDENLDEFKKLTNAFNQERK---VRLQAAILINSIHDSYKESKELELKTENKIS 66
           M ++K LDENLDEFKKLTNA NQ  +      +AAILIN IHD+YKE K + L+ +N   
Sbjct: 55  MEENKNLDENLDEFKKLTNALNQTEEKMGAESEAAILINLIHDTYKEVK-IALEGKNFRR 114

Query: 67  SGAESLCSKGNNHFKRSHNNKSQRMNKDKNY-PERGKKLEE--KTTEDIGLMAKKIPTEI 126
                    G   F ++ N + +   K + +  + G    E  K TE +    +K   EI
Sbjct: 115 DKNIRYRPYGRKDFNQNRNYQREDRRKGREHGSDHGPVGNEAFKYTEALAATNEK-AMEI 174

Query: 127 ETSEER-ILEG----------DWFVEYKSKVGDSVYMDNNHECEIISTGSMLLKLSDNRE 186
           ET EE  +L+           +WFV+YKS+  DS+YM NN +CEII  G +LLKLS+NRE
Sbjct: 175 ETEEEDWVLDSRCTYHMTSKKNWFVDYKSQAEDSIYMGNNQDCEII--GLVLLKLSNNRE 234

Query: 187 VLLKGVRHAPKLNRNLISLGMLDDLGCSIHAEKGCLEILKHGRAILTAKKRERLYIVINV 246
           VLLKGVRH PKL RNLISLG         H  K  L+ + HG     A+           
Sbjct: 235 VLLKGVRHVPKLKRNLISLGE--------HRSKATLDYV-HGDLWGPARTHS-------- 294

Query: 247 NRPKYALISYSERNIRANSSSRSLKDLASESIALMASQSGKNSRKENTFQEQYLTMYMEI 306
                                                                       
Sbjct: 295 ------------------------------------------------------------ 354

Query: 307 FGDQLKIYLGRFQTFEYFKIWKNEVETQTEKNIKYPRTYNGLEFLSNEFNSLCNEFDISR 366
                               W               RT N LEFLSN+FN LCNEF IS+
Sbjct: 355 --------------------WGGS------------RTDNALEFLSNDFNFLCNEFGISK 370

Query: 367 HKTMAYTPQQNGVVERMNRTLIETV---------------EALATATYTVNRVLCVSIEM 404
           H  +AYTPQQN V ERMNRTL+E V               EALA ATYTVNR LCVSI+ 
Sbjct: 415 HIIVAYTPQQNKVAERMNRTLMERVKCMILEAKISEHFWAEALAIATYTVNRSLCVSIDA 370

[Close]

BLAST of ClCG07G006780 vs. ExPASy TrEMBL
Match: A0A5D3D1S7 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002150 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.3e-41
Identity = 118/275 (42.91%), Postives = 157/275 (57.09%), Query Frame = 0


Query: 146 MDNNHECEIISTGSMLLKLSDNREVLLKGVRHAPKLNRNLISLGMLDDLGCSIHAEKGCL 205
           M NN  CEII   S+LLKLS+NREVLLKGVRH PKL R+LISLGM+DDLGC I+ EKG +
Sbjct: 1   MGNNRYCEIIGVSSVLLKLSNNREVLLKGVRHVPKLKRHLISLGMIDDLGCFIYIEKGSM 60

Query: 206 EILKHGRAILTAKKRERLYIVINVNRPKYALISYSERNIRANSSSRSLKDLASESIALMA 265
           ++ + GR IL ++K E LYIV NV +PKYALIS +E+        R L  ++ + +  + 
Sbjct: 61  KVERQGRVILNSRKVEGLYIVKNVIKPKYALISETEKGNELELWHRRLSHISEKGLTELQ 120

Query: 266 SQSGKNSRKENTFQEQYLTMYMEIFGDQLKIYLGRFQTFEYFKIWKNEVETQTEKNIKYP 325
            Q    +R+            ++ FG       G+ +  ++ K   +   T         
Sbjct: 121 KQRLIQARE------------VKRFGFCEHCIFGKSKRLKFSKGQHHSKAT--------- 180

Query: 326 RTYNGLEFLSNEF--NSLCNEFDISRHKTMAYTPQQNGVVERMNRTLIETV--------- 385
                L ++  +    +  + +  SRH+T+AYT QQNGV ERMNRTL+E V         
Sbjct: 181 -----LGYVHGDLWGPARTHSWRGSRHRTVAYTLQQNGVAERMNRTLMERVRCMISEAKI 240

Query: 386 ------EALATATYTVNRVLCVSIEMKTLEKRWTG 404
                 EALATATYTVNR  CVSI+MKT E+RWTG
Sbjct: 241 SENFWAEALATATYTVNRSPCVSIDMKTPEERWTG 249

[Close]

BLAST of ClCG07G006780 vs. ExPASy TrEMBL
Match: A0A5A7ULT2 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001970 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-39
Identity = 117/273 (42.86%), Postives = 132/273 (48.35%), Query Frame = 0


Query: 146 MDNNHECEIISTGSMLLKLSDNREVLLKGVRHAPKLNRNLISLGMLDDLGCSIHAEKGCL 205
           M NN +CEII   S+LLKLS+NREVLLK VRH PKL RNLISLG                
Sbjct: 1   MGNNQDCEIIGVSSVLLKLSNNREVLLKEVRHVPKLKRNLISLG---------------- 60

Query: 206 EILKHGRAILTAKKRERLYIVINVNRPKYALISYSERNIRANSSSRSLKDLASESIALMA 265
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 266 SQSGKNSRKENTFQEQYLTMYMEIFGDQLKIYLGRFQTFEYFKIWKNEVETQTEKNIKYP 325
                         E +   YM IFGDQL++ LG  Q          +VETQTE+ IK+ 
Sbjct: 121 --------------EHHSKAYMVIFGDQLELILGVDQV---------KVETQTERKIKFL 174

Query: 326 RTYNGLEFLSNEFNSLCNEFDISRHKTMAYTPQQNGVVERMNRTLIETV----------- 385
           RT NGLEFLSN+FN LCNEF ISRH+T+AYTPQQNGV ERMNRTL+E V           
Sbjct: 181 RTDNGLEFLSNDFNFLCNEFGISRHRTVAYTPQQNGVAERMNRTLMERVRCMVSDAKISE 174

Query: 386 ----EALATATYTVNRVLCVSIEMKTLEKRWTG 404
               EALATATYTVNR  CVSI+MKT E+RWTG
Sbjct: 241 NFWAEALATATYTVNRSPCVSIDMKTPEERWTG 174

The following BLAST results are available for this feature:

BLAST of ClCG07G006780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054988.1	2.3e-43	36.21	hypothetical protein E6C27_scaffold43052G001360 [Cucumis melo var. makuwa]	[more]
KAA0039651.1	7.5e-42	41.10	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]...	[more]
KAA0045569.1	9.8e-42	37.06	putative retroelement pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0062924.1	1.1e-40	42.91	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]...	[more]
KAA0056038.1	3.5e-39	42.86	hypothetical protein E6C27_scaffold319G001970 [Cucumis melo var. makuwa]	[more]

BLAST of ClCG07G006780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.4e-14	26.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	5.6e-08	22.76	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of ClCG07G006780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJ23	1.1e-43	36.21	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BAM8	3.6e-42	41.10	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A5A7TWF0	4.8e-42	37.06	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3D1S7	5.3e-41	42.91	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A5A7ULT2	1.7e-39	42.86	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of ClCG07G006780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 296..408 e-value: 1.1E-16 score: 63.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..103
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 327..419 score: 10.430224
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 279..406

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G006780.1	ClCG07G006780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding