ClCG07G000420 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACCAACGGCAACGCCTTTCCCTCTACCACACCCACATCAAGCTGCTTGGTTTCGACCTTAATTCCCTCAACCAAAATTCCTCTTCTTCTTCTTCCGATGCAGTTTCTTTCTCTCGCAATGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTCTCTCGTGACCTCAAACCTAACAGGTTTCTCAAATTTTCCGTCGACGATGGTACCGCTTGTGTCGGTTGCATCCTGTGGCTAAATCATCTCACATCGCCTTATTTTGCTTCCCGCCATCAGCCAGATGTTCGAATAATGGGAAATATGGCGACCCATTTCGCATCCCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGGGGGAAATTTAGCAGCTATAGGGGAGTGGTGCAGATTACGGTGTCAGATGTTGTGGTTGAGGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTTTAAAGTGTTATGACCTCTCCCCTGCACCCACTTAGCTGTAGATTCCAATGGTTTTAAAATGCTATCTCTAGCCTTGTGATTTTCCCTTTCTTTTTCTTTCTGAATGCAGAAAAGATTCCGCTTTTTGTTGTTTTCTTTTTCCTTCTTAAAGTTTAAGTTTACTGTACAAAATTTTCCACAACAGCTTGGCCTTTGAAATGATAATATAATAATATTGAAACTACGTTGCTACTACTGCCTGAGTTTACTGTTTAGTTTGATGAAAATTGCTCATGCTCAATGAGGAATTTAATGACATTTTTTCCCATCGGATATGATCAAAGGGATGGCGGGATTGTGAGTACTAAGTACTAACATTTTTATTTATAAATCAAACCATTTAAAGCTGCAAATATTAATAAATATATGTATATATCAACCCATACCATAGCTGCGACAAATTTTACCCACCCATTACATCAAGTAGCCGTGTAGATATTTGTTTATAGAACATGATTGGTAGATGTATGGGCCTTTACCTAAAGTTATAGGTTTGTTTTTTTTAGCTTTTTTCTTTGGGGGGTGGTTGTTCTGTGGGAGCTGATTCTTTTGGAGTGAAAGATCATTTTGAGAGAATGATATGGGTATTGGGGATTTTCTAGTTCCAACTTCCAAGCAGGATGGGCACAGGATGAACAATGGAAAGTCAGAATTAGAAACAAAAGAATGGCTTTATGACACTGATGAAAGGTAAATTCAAACTGCAAAGTTGAATCCTCTGGTGACTGCATACCCCAAAATCACTCCACTTTTGACCTCAGTCAATTCAAAATTATACTTCACTGAGATTTCTCTGTGATGTAGTCCTTTATGTTTCTAATTTGTTAGGTTTTAATAATTAAGTTGGTTTGTTGTTAGTTGAGTTATGTAATTAGGTTTAGGTAGTTTTAAAGATATTTACCATGTTTCAGCAGGTTGTAGGTTCCCTCTTCCAGCTCTTTAAGAGGCTGCTAGCTTTGTATAAATTCACAATTTTGATAAGAAATAAAGTTTCCTCTCTTGGTATATAACAATATGCTTGGCTTGCATTGATGCTCTCTCATTCCTAAGCTGTTCATTCAACTAATTCTCTGAACAAAGAGCATTTTCTTATTGTTGTTGTGAAAGATTTTTGTTCGATATGTTGTGGCCAGGCCATGAAGCACAAAATAGTGGAAGTTTCCATATATGCAACTGCTATATCTACTGACTTTGTCTTTTTCCTCTTTTGGAACTGATTCCTCTCTGCTTTTAGAATAGGGATGTCAAATGAAGTCAGCCACCCTCAAAACTTGATCAGTTTTACTCAAACTATTTTGGTTTGGTTGATTCAAGTTCAAATGAGTTGAATTCATATGGATGAACTTATCGATAGACAATGATGGGATAATTGATTTTAGATTTATGTTAGTATCAACTGAGCCTAGATATATAATTCTATTATCTGGTGAAGCAAATTGATTCCAAATTGTTTGTCATAATTTTGTGGCCTAGAATATAAAACAGTTGCAATATCTTTGCTTTGAATTTAAATGGCCTTCAGGTTAAGGCTAGCTCAGGTGGCTATAGAATACAGAGGTCGAGCTGGCTCTAACCTTCTTGATGGCTACGATGAAAAACAAAGAAGCCGGTGGACAAATTTCTCATGA ATGAACCAACGGCAACGCCTTTCCCTCTACCACACCCACATCAAGCTGCTTGGTTTCGACCTTAATTCCCTCAACCAAAATTCCTCTTCTTCTTCTTCCGATGCAGTTTCTTTCTCTCGCAATGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTCTCTCGTGACCTCAAACCTAACAGGTTTCTCAAATTTTCCGTCGACGATGGTACCGCTTGTGTCGGTTGCATCCTGTGGCTAAATCATCTCACATCGCCTTATTTTGCTTCCCGCCATCAGCCAGATGTTCGAATAATGGGAAATATGGCGACCCATTTCGCATCCCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGGGGGAAATTTAGCAGCTATAGGGGAGTGGTGCAGATTACGGTGTCAGATGTTGTGGTTGAGGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTAAGGCTAGCTCAGGTGGCTATAGAATACAGAGGTCGAGCTGGCTCTAACCTTCTTGATGGCTACGATGAAAAACAAAGAAGCCGGTGGACAAATTTCTCATGA ATGAACCAACGGCAACGCCTTTCCCTCTACCACACCCACATCAAGCTGCTTGGTTTCGACCTTAATTCCCTCAACCAAAATTCCTCTTCTTCTTCTTCCGATGCAGTTTCTTTCTCTCGCAATGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTCTCTCGTGACCTCAAACCTAACAGGTTTCTCAAATTTTCCGTCGACGATGGTACCGCTTGTGTCGGTTGCATCCTGTGGCTAAATCATCTCACATCGCCTTATTTTGCTTCCCGCCATCAGCCAGATGTTCGAATAATGGGAAATATGGCGACCCATTTCGCATCCCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGGGGGAAATTTAGCAGCTATAGGGGAGTGGTGCAGATTACGGTGTCAGATGTTGTGGTTGAGGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTAAGGCTAGCTCAGGTGGCTATAGAATACAGAGGTCGAGCTGGCTCTAACCTTCTTGATGGCTACGATGAAAAACAAAGAAGCCGGTGGACAAATTTCTCATGA MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRLAQVAIEYRGRAGSNLLDGYDEKQRSRWTNFS Homology
BLAST of ClCG07G000420 vs. NCBI nr
Match: XP_038887265.1 (CST complex subunit STN1 isoform X1 [Benincasa hispida]) HSP 1 Score: 304.3 bits (778), Expect = 7.4e-79 Identity = 158/191 (82.72%), Postives = 167/191 (87.43%), Query Frame = 0
BLAST of ClCG07G000420 vs. NCBI nr
Match: XP_038887266.1 (CST complex subunit STN1 isoform X2 [Benincasa hispida]) HSP 1 Score: 293.9 bits (751), Expect = 1.0e-75 Identity = 146/156 (93.59%), Postives = 152/156 (97.44%), Query Frame = 0
BLAST of ClCG07G000420 vs. NCBI nr
Match: XP_023553655.1 (CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553656.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553657.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 282.7 bits (722), Expect = 2.3e-72 Identity = 139/159 (87.42%), Postives = 147/159 (92.45%), Query Frame = 0
BLAST of ClCG07G000420 vs. NCBI nr
Match: XP_022963452.1 (LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata]) HSP 1 Score: 280.4 bits (716), Expect = 1.1e-71 Identity = 137/159 (86.16%), Postives = 147/159 (92.45%), Query Frame = 0
BLAST of ClCG07G000420 vs. NCBI nr
Match: XP_022967373.1 (CST complex subunit STN1 [Cucurbita maxima] >XP_022967374.1 CST complex subunit STN1 [Cucurbita maxima] >XP_022967375.1 CST complex subunit STN1 [Cucurbita maxima]) HSP 1 Score: 280.0 bits (715), Expect = 1.5e-71 Identity = 137/155 (88.39%), Postives = 145/155 (93.55%), Query Frame = 0
BLAST of ClCG07G000420 vs. ExPASy Swiss-Prot
Match: Q9LMK5 (CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 5.8e-34 Identity = 76/150 (50.67%), Postives = 100/150 (66.67%), Query Frame = 0
BLAST of ClCG07G000420 vs. ExPASy TrEMBL
Match: A0A6J1HFA9 (LOW QUALITY PROTEIN: CST complex subunit STN1 OS=Cucurbita moschata OX=3662 GN=LOC111463780 PE=4 SV=1) HSP 1 Score: 280.4 bits (716), Expect = 5.5e-72 Identity = 137/159 (86.16%), Postives = 147/159 (92.45%), Query Frame = 0
BLAST of ClCG07G000420 vs. ExPASy TrEMBL
Match: A0A6J1HUX0 (CST complex subunit STN1 OS=Cucurbita maxima OX=3661 GN=LOC111466921 PE=4 SV=1) HSP 1 Score: 280.0 bits (715), Expect = 7.2e-72 Identity = 137/155 (88.39%), Postives = 145/155 (93.55%), Query Frame = 0
BLAST of ClCG07G000420 vs. ExPASy TrEMBL
Match: A0A5D3E3H2 (CST complex subunit STN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001150 PE=4 SV=1) HSP 1 Score: 276.2 bits (705), Expect = 1.0e-70 Identity = 140/161 (86.96%), Postives = 147/161 (91.30%), Query Frame = 0
BLAST of ClCG07G000420 vs. ExPASy TrEMBL
Match: A0A1S3BLT5 (CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1) HSP 1 Score: 276.2 bits (705), Expect = 1.0e-70 Identity = 140/161 (86.96%), Postives = 147/161 (91.30%), Query Frame = 0
BLAST of ClCG07G000420 vs. ExPASy TrEMBL
Match: A0A0A0LNV0 (OB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 9.8e-69 Identity = 137/161 (85.09%), Postives = 146/161 (90.68%), Query Frame = 0
BLAST of ClCG07G000420 vs. TAIR 10
Match: AT1G07130.1 (Nucleic acid-binding, OB-fold-like protein ) HSP 1 Score: 145.6 bits (366), Expect = 4.1e-35 Identity = 76/150 (50.67%), Postives = 100/150 (66.67%), Query Frame = 0
BLAST of ClCG07G000420 vs. TAIR 10
Match: AT2G24490.1 (replicon protein A2 ) HSP 1 Score: 42.7 bits (99), Expect = 3.7e-04 Identity = 30/123 (24.39%), Postives = 53/123 (43.09%), Query Frame = 0
BLAST of ClCG07G000420 vs. TAIR 10
Match: AT2G24490.2 (replicon protein A2 ) HSP 1 Score: 42.7 bits (99), Expect = 3.7e-04 Identity = 30/123 (24.39%), Postives = 53/123 (43.09%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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