ClCG06G018000 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G018000
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Protein of unknown function (DUF 3339)
Location	CG_Chr06: 31042298 .. 31042507 (+)
RNA-Seq Expression	ClCG06G018000
Synteny	ClCG06G018000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATTGGGGACCGGTGGTTATAGCGGTGGTGCTCTTTGTCCTGCTCAGTCCAGGCCTTCTCTTTCAGATCCCAGCCAGAGGAAGAGTCGTTGAATTTGGAAATATGCAGACGAGTGGGGCTTCCATTTTAGTCCACGCCATCATCTTCTTCGGCCTCATCACTATCTTCCTCATCGCCATCGGCGTTCACATCTACACTGGCTAA

mRNA sequence

ATGGCAGATTGGGGACCGGTGGTTATAGCGGTGGTGCTCTTTGTCCTGCTCAGTCCAGGCCTTCTCTTTCAGATCCCAGCCAGAGGAAGAGTCGTTGAATTTGGAAATATGCAGACGAGTGGGGCTTCCATTTTAGTCCACGCCATCATCTTCTTCGGCCTCATCACTATCTTCCTCATCGCCATCGGCGTTCACATCTACACTGGCTAA

Coding sequence (CDS)

ATGGCAGATTGGGGACCGGTGGTTATAGCGGTGGTGCTCTTTGTCCTGCTCAGTCCAGGCCTTCTCTTTCAGATCCCAGCCAGAGGAAGAGTCGTTGAATTTGGAAATATGCAGACGAGTGGGGCTTCCATTTTAGTCCACGCCATCATCTTCTTCGGCCTCATCACTATCTTCCTCATCGCCATCGGCGTTCACATCTACACTGGCTAA

Protein sequence

MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLIAIGVHIYTG

Homology

[Close]

BLAST of ClCG06G018000 vs. NCBI nr
Match: XP_022921425.1 (uncharacterized protein LOC111429708 [Cucurbita moschata])

HSP 1 Score: 129.8 bits (325), Expect = 9.1e-27
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
           MADWGPV+IAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAII+FGLITIFL+
Sbjct: 76  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 135

Query: 61  AIGVHIYTG 70
           AIGVHIYTG
Sbjct: 136 AIGVHIYTG 144

[Close]

BLAST of ClCG06G018000 vs. NCBI nr
Match: XP_022987136.1 (uncharacterized protein LOC111484778 [Cucurbita maxima])

HSP 1 Score: 129.8 bits (325), Expect = 9.1e-27
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPV+IAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAII+FGLITIFL+
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of ClCG06G018000 vs. NCBI nr
Match: XP_023515465.1 (uncharacterized protein LOC111779615 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 65/69 (94.20%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPV+IAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAII+FGLITIFL+
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 60

Query: 61 AIGVHIYTG 70
          AIGVH+YTG
Sbjct: 61 AIGVHVYTG 69

[Close]

BLAST of ClCG06G018000 vs. NCBI nr
Match: OIW00263.1 (hypothetical protein TanjilG_27514 [Lupinus angustifolius])

HSP 1 Score: 129.0 bits (323), Expect = 1.5e-26
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPVVIAVVLFVLLSPGLLFQIP RGRVVEFGNMQTSGASILVHAII+FGLITIFLI
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQIPGRGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of ClCG06G018000 vs. NCBI nr
Match: XP_004138041.1 (uncharacterized protein LOC101212373 [Cucumis sativus] >XP_008464420.1 PREDICTED: uncharacterized protein LOC103502312 [Cucumis melo] >KAA0057764.1 putative transmembrane protein [Cucumis melo var. makuwa] >KGN63475.1 hypothetical protein Csa_013057 [Cucumis sativus] >TYJ98445.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 1.5e-26
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPV+IAVVLFVLLSPGLLFQIPA+GRVVEFGNMQTSGASILVHAII+FGLITIFLI
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of ClCG06G018000 vs. ExPASy TrEMBL
Match: A0A6J1JDA3 (uncharacterized protein LOC111484778 OS=Cucurbita maxima OX=3661 GN=LOC111484778 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.4e-27
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPV+IAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAII+FGLITIFL+
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of ClCG06G018000 vs. ExPASy TrEMBL
Match: A0A6J1E5M1 (uncharacterized protein LOC111429708 OS=Cucurbita moschata OX=3662 GN=LOC111429708 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.4e-27
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
           MADWGPV+IAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAII+FGLITIFL+
Sbjct: 76  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 135

Query: 61  AIGVHIYTG 70
           AIGVHIYTG
Sbjct: 136 AIGVHIYTG 144

[Close]

BLAST of ClCG06G018000 vs. ExPASy TrEMBL
Match: A0A5A7URK5 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00460 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.5e-27
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPV+IAVVLFVLLSPGLLFQIPA+GRVVEFGNMQTSGASILVHAII+FGLITIFLI
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of ClCG06G018000 vs. ExPASy TrEMBL
Match: A0A4P1R3A0 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_27514 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.5e-27
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPVVIAVVLFVLLSPGLLFQIP RGRVVEFGNMQTSGASILVHAII+FGLITIFLI
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQIPGRGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of ClCG06G018000 vs. ExPASy TrEMBL
Match: A0A0A0LNK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001470 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.5e-27
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPV+IAVVLFVLLSPGLLFQIPA+GRVVEFGNMQTSGASILVHAII+FGLITIFLI
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of ClCG06G018000 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-28
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPVV+AV+LFVLL+PGLLFQIPARGRVVEFGNMQTSGASILVH IIFFGLITIF I
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIGVHIYTG 70
          AI +HIYTG
Sbjct: 61 AIRLHIYTG 69

[Close]

BLAST of ClCG06G018000 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 120.6 bits (301), Expect = 5.1e-28
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLI 60
          MADWGPV+IAV+LFV+LSPGLLFQIPA GRVVEFGNMQTSGASILVHAIIFFGLITIF I
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AIGVHIYTG 70
          AI VHIY+G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of ClCG06G018000 vs. TAIR 10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 99.0 bits (245), Expect = 1.6e-21
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 2  ADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLIA 61
          ADWGPV++AV LF+LLSPGLLFQ+PAR RV+EFGNM TSG SILVHAII+F ++TI +IA
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIA 62

Query: 62 IGVHIY 68
          I +HI+
Sbjct: 63 IQIHIH 68

[Close]

BLAST of ClCG06G018000 vs. TAIR 10
Match: AT3G01940.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 97.1 bits (240), Expect = 6.1e-21
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 2  ADWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLIA 61
          ADWGPV +AVVLFV+LSPGLLFQ+PAR RV+E GNM TSG SILVHAI+FF +ITI +IA
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 62 IGVHIY 68
          I +HI+
Sbjct: 64 IQIHIH 69

[Close]

BLAST of ClCG06G018000 vs. TAIR 10
Match: AT3G27027.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 94.4 bits (233), Expect = 3.9e-20
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 3  DWGPVVIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIFFGLITIFLIAI 62
          DWGPV++AV LF+LLSPGLLFQ+PAR RVVEFGNM TSG +ILVHA I+F ++TI +IAI
Sbjct: 4  DWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILVIAI 63

Query: 63 GVHIY 68
           +HI+
Sbjct: 64 QIHIH 68

The following BLAST results are available for this feature:

BLAST of ClCG06G018000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921425.1	9.1e-27	95.65	uncharacterized protein LOC111429708 [Cucurbita moschata]	[more]
XP_022987136.1	9.1e-27	95.65	uncharacterized protein LOC111484778 [Cucurbita maxima]	[more]
XP_023515465.1	1.2e-26	94.20	uncharacterized protein LOC111779615 [Cucurbita pepo subsp. pepo]	[more]
OIW00263.1	1.5e-26	97.10	hypothetical protein TanjilG_27514 [Lupinus angustifolius]	[more]
XP_004138041.1	1.5e-26	95.65	uncharacterized protein LOC101212373 [Cucumis sativus] >XP_008464420.1 PREDICTED...	[more]

BLAST of ClCG06G018000 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG06G018000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JDA3	4.4e-27	95.65	uncharacterized protein LOC111484778 OS=Cucurbita maxima OX=3661 GN=LOC111484778...	[more]
A0A6J1E5M1	4.4e-27	95.65	uncharacterized protein LOC111429708 OS=Cucurbita moschata OX=3662 GN=LOC1114297...	[more]
A0A5A7URK5	7.5e-27	95.65	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A4P1R3A0	7.5e-27	97.10	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_27514 PE=4 S...	[more]
A0A0A0LNK0	7.5e-27	95.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001470 PE=4 SV=1	[more]

BLAST of ClCG06G018000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48660.1	1.8e-28	89.86	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	5.1e-28	89.86	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	1.6e-21	72.73	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	6.1e-21	74.24	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	3.9e-20	70.77	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 e-value: 9.3E-37 score: 125.0
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..69
None	No IPR available	PANTHER	PTHR33128:SF73	BNAA06G16390D PROTEIN	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G018000.1	ClCG06G018000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane