ClCG06G017270 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G017270
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	LOB domain-containing protein
Location	CG_Chr06: 30476051 .. 30479027 (-)
RNA-Seq Expression	ClCG06G017270
Synteny	ClCG06G017270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGTTCGGTAGGGTTGTGTGAGCCTAGCCTAGTTGAAATGTACAGGTGCGCCTACTAAGTTTTAACTAGATTGATATATTCTTAACACATTTATCATATCTCGTAACCACAACAAGATCATTATAGAGAAGAGCTAGAGAAAAGCTTAGAAAGAGAAACATGTTGACAAGAAGGCTAGAGAGAAGCTTAAGAAATTGCTATATATAAACTCTCGAACCATATTGGCACCTTTGCATATATACTATATGATATTTCTCTCTAATAATAAAATTTTTCATTTGTGCGTCAATCTTTACTGGTTTTTTTAGTACAACAATTGTAGAAAGTAGGGATTGAACTTCCTACCTATAGAATGGAAAATCATGCCAATTATTATTAAGCTAAGCTAACTTTGGCCCATCTTTACTGTTTATACTTTCATTTTTTTTTTTCTAATCAATTTCATTTCTGTCACAATACATACACAGTTTGAATCTTTTCACTCTCTAGATGGTAGTATGTGAATTGAAAATGGTATAATCTTGAGAATTGAGTTATTAATTAAACAAAAATAAATATAATGATAGGTATATGTGTAATGGAGTGCATGAAAAAAAAAAAAAAAAAAGAATGGAATAAAAATGGGAGACAATCCCACAACCCTGATATTATTATTGGATGCAGGGTCATAGTCATTCTTTTGTTAGTGTACCCACCATTTATTATCCTTGTCTTTTGCCTCCATTCCCTTCTCTCTGCTTCTTCCCATCCACTAAATATACTCTTCTGCCATCTTTCACTCCCACTCAATACCCTCATTTTCTTTTTCCTTCTCTCTCTTTTTTTCTCTCTTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCCAATTAGGGTTTTGCTTCACTCTTCTTCATCAGATCAGCTCTTAAACCAAACCTCAAAAATTTTTAGTTTATCAAAAGGAAAGGAAGAAAAGGGGTTTAAAGCTTTCTTACTTGAAAGGTAATTAAAAGGAACTTCCTTTTTTGGTGGGTTTTTGTTGTTTTATTTATATATGCATTTTTTGAATTGATTCCAAAGGAAAAAAGCAAAGACCTAGATCACACAAAGAGAGGTAAGTTTATGTAGCTCTCTTTGTTTTGTTTGTACAAGTAAAAAAAAAAAAAAAAGAAAAAAAAATCCAAGAAAAATAATAAAGGGTTATGTTGAGTTTTGTTTGTTCTTATCATTTATTTATTTATTTATTTATATAGGTTAGTAAAAAGGCTAAAGAGAGAAATTAATGTAGACCCTTTGAACGGTATATGGGGATAGGTAGAGCTTAATTTAGGGCTTTCTCTTACCCACTGTGTTATATTATTATTATTATTATTATTATTATTTTTGACGTGTGTGTGTGTATGTTAAAAAAGAATATATAATATAATAAAATAATTTCTGATGACTTTTACTTTGTTTTTTCACCAGTAGTCATGTGTCTCATCTTCTTCACCTGAATTGCAGAATATATGAAGCCTGTCTTTGTAGCTGCTTTGCACGCAACCTCTACTTTCTTCTCAATTTACACTTTTCAAAGAAAATAGAAACAAATAATTCATGGGTTAATTATTATAATTAAGTTGGAAAAATCTAAATCTATTAAAACAATGGAGGAAGAAAATGATTATATTAAGAAACTTAAAACACCCTAAATGAAGAGATCTAACCCTTTCAATCCCAACATATCTTAGGGAATAATAAGTCATCACTTACCATCTTAAAGGTCAATGGTTGAATTCTCCACTTTCGAGAAAAAAAAGTTTCGAACAGAGATGAAATTATTAGGAAAATTAGATAGATATATAATTGAGTAAAGGACATGCATGGAAAGAACAAATAATATATATATCTGCAATTTAGGCAGATGTTTCTGCAAATTTGATTTAGGGTGTTGTACGTGTGTCTGTCCAAGGGAGATTTTTGTTTCTTTTTTTAATAAGTGCGCACGCGTTTGAAAGAAAGAAAGAGATCTAGATTCTGAACATAAATTAAACTTGGGATCAGCTACAAAATTTTAAATAACTTTCCTCTTCTGAATTTCATCTGACCTTGTTCTAGAAATTCCTTTACTTTTACTGATCTCCACACACACACACATAAACCTAAAAGAAGGTTCTTTTAATAAATAAAGAACGGGAGATTCGAACCACAAACCTTTTTGTTAAAACATTTTTATTCTAGTTATCCTAAGCTCCCTCTAGCCTTCTATGGAAGATATACAAAATTGGAACATCATAAAGTACTATTAATTGGGTTTAATCTTTAATGTCTTGGTTGACTTGTTTGAGGAATTAATTAAAACTTTAAGGTAAAAGAATGGGGAAAAAATTAAAGAGCATATATATACATAGATTCGTTAAGAAATTGAGTGATGTTCTTACTTTGATTGGTTAGGGCAAGGATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCTGGTTGCATTTTTGCTCCTTATTTCCCACCGGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAAATCTTTGGGGCCAGCAATGTCACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGAGAGGATGCTGTGAACTCTCTTGCCTATGAGGCTGAGGCCCGAGTTCGGGACCCAGTCTACGGTTGCGTTGGAGCCATCTCCTTCCTCCAAAGGCAAGTTCAAAGGCTCCAAAAGGAACTAGACGCTGCGAATGCTGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCAAGTGGTTCAGCCCAACCTTGGCGCTCGCCCGAGAGCGTTAGATCAATATCACACAAGTTCATCAACAAGTGGATATTATAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCATTGCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGAGGAGGAGATGGCAATATTTGA

mRNA sequence

ATGGTGGGTTCGGTAGGGTTGTGTGAGCCTAGCCTAGTTGAAATGTACAGGGTTTTGCTTCACTCTTCTTCATCAGATCAGCTCTTAAACCAAACCTCAAAAATTTTTAGTTTATCAAAAGGAAAGGAAGAAAAGGGGTTTAAAGCTTTCTTACTTGAAAGGGCAAGGATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCTGGTTGCATTTTTGCTCCTTATTTCCCACCGGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAAATCTTTGGGGCCAGCAATGTCACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGAGAGGATGCTGTGAACTCTCTTGCCTATGAGGCTGAGGCCCGAGTTCGGGACCCAGTCTACGGTTGCGTTGGAGCCATCTCCTTCCTCCAAAGGCAAGTTCAAAGGCTCCAAAAGGAACTAGACGCTGCGAATGCTGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCAAGTGGTTCAGCCCAACCTTGGCGCTCGCCCGAGAGCGTTAGATCAATATCACACAAGTTCATCAACAAGTGGATATTATAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCATTGCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGAGGAGGAGATGGCAATATTTGA

Coding sequence (CDS)

ATGGTGGGTTCGGTAGGGTTGTGTGAGCCTAGCCTAGTTGAAATGTACAGGGTTTTGCTTCACTCTTCTTCATCAGATCAGCTCTTAAACCAAACCTCAAAAATTTTTAGTTTATCAAAAGGAAAGGAAGAAAAGGGGTTTAAAGCTTTCTTACTTGAAAGGGCAAGGATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCTGGTTGCATTTTTGCTCCTTATTTCCCACCGGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAAATCTTTGGGGCCAGCAATGTCACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGAGAGGATGCTGTGAACTCTCTTGCCTATGAGGCTGAGGCCCGAGTTCGGGACCCAGTCTACGGTTGCGTTGGAGCCATCTCCTTCCTCCAAAGGCAAGTTCAAAGGCTCCAAAAGGAACTAGACGCTGCGAATGCTGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCAAGTGGTTCAGCCCAACCTTGGCGCTCGCCCGAGAGCGTTAGATCAATATCACACAAGTTCATCAACAAGTGGATATTATAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCATTGCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGAGGAGGAGATGGCAATATTTGA

Protein sequence

MVGSVGLCEPSLVEMYRVLLHSSSSDQLLNQTSKIFSLSKGKEEKGFKAFLLERARMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSQVVQPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEGGGDGNI

Homology

[Close]

BLAST of ClCG06G017270 vs. NCBI nr
Match: XP_038880086.1 (protein LATERAL ORGAN BOUNDARIES-like [Benincasa hispida])

HSP 1 Score: 371.3 bits (952), Expect = 6.2e-99
Identity = 181/185 (97.84%), Postives = 182/185 (98.38%), Query Frame = 0


Query: 57  MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 116
           MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 117 HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 176
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120

Query: 177 AGVSQVVQPNLGARPRALDQYHT-SSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEGG 236
           AGV+QVVQPNLGARPRALDQYHT SSSTSGYYNQHLPAFPMAY LPWNENSSGNNINEGG
Sbjct: 121 AGVNQVVQPNLGARPRALDQYHTSSSSTSGYYNQHLPAFPMAYSLPWNENSSGNNINEGG 180

Query: 237 GDGNI 241
           GD NI
Sbjct: 181 GDANI 185

[Close]

BLAST of ClCG06G017270 vs. NCBI nr
Match: KAG6589428.1 (Protein LATERAL ORGAN BOUNDARIES, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 369.4 bits (947), Expect = 2.4e-98
Identity = 183/199 (91.96%), Postives = 189/199 (94.97%), Query Frame = 0


Query: 42  KEEKGFKAFLLERARMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKI 101
           + +K FKAF LE  RMASSSSYNSPCAACKFLRRKCM GCIFAPYFPPEEPQKFANVHKI
Sbjct: 17  ERKKDFKAFSLE--RMASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKI 76

Query: 102 FGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDA 161
           FGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDA
Sbjct: 77  FGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDA 136

Query: 162 ANADLIRFACNEIPNAGVSQVVQPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYPLP 221
           ANADLIR+ACNEIPNAGVS VVQP+ GARPRALDQ+HTSSST GYYNQHLPAFPMAYPLP
Sbjct: 137 ANADLIRYACNEIPNAGVSHVVQPSPGARPRALDQFHTSSST-GYYNQHLPAFPMAYPLP 196

Query: 222 WNENSSGNNINEGGGDGNI 241
           WNENS GN+INEGGGDGNI
Sbjct: 197 WNENSPGNDINEGGGDGNI 212

[Close]

BLAST of ClCG06G017270 vs. NCBI nr
Match: XP_023515750.1 (protein LATERAL ORGAN BOUNDARIES-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 361.7 bits (927), Expect = 4.9e-96
Identity = 176/184 (95.65%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 57  MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 116
           MASSSSYNSPCAACKFLRRKCM GCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 117 HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 176
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIR+ACNEIPN
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120

Query: 177 AGVSQVVQPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEGGG 236
           AGVS VVQP+ GARPRALDQYHTSSST GYYNQHLPAFPMAYPLPWNENS GN+INEGGG
Sbjct: 121 AGVSHVVQPSPGARPRALDQYHTSSST-GYYNQHLPAFPMAYPLPWNENSPGNDINEGGG 180

Query: 237 DGNI 241
           DGNI
Sbjct: 181 DGNI 183

[Close]

BLAST of ClCG06G017270 vs. NCBI nr
Match: XP_022922073.1 (protein LATERAL ORGAN BOUNDARIES-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 360.5 bits (924), Expect = 1.1e-95
Identity = 181/221 (81.90%), Postives = 190/221 (85.97%), Query Frame = 0


Query: 20  LHSSSSDQLLNQTSKIFSLSKGKEEKGFKAFLLERARMASSSSYNSPCAACKFLRRKCMP 79
           LHS    +  N+  +    +  K        +    RMASSSSYNSPCAACKFLRRKCM 
Sbjct: 29  LHSEKEKEKKNRNKETVYATSFKR-------IQREGRMASSSSYNSPCAACKFLRRKCMS 88

Query: 80  GCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVY 139
           GCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVY
Sbjct: 89  GCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVY 148

Query: 140 GCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSQVVQPNLGARPRALDQYHT 199
           GCVGAISFLQRQVQRLQKELDAANADLIR+ACNEIPNAGVS VVQP+ GARPRALDQ+HT
Sbjct: 149 GCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPNAGVSHVVQPSPGARPRALDQFHT 208

Query: 200 SSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEGGGDGNI 241
           SSST GYYNQHLPAFPMAYPLPWNENS GN+INEGGGDGNI
Sbjct: 209 SSST-GYYNQHLPAFPMAYPLPWNENSPGNDINEGGGDGNI 241

[Close]

BLAST of ClCG06G017270 vs. NCBI nr
Match: XP_022922076.1 (LOB domain-containing protein 25-like isoform X2 [Cucurbita moschata] >XP_022922077.1 LOB domain-containing protein 25-like isoform X2 [Cucurbita moschata] >XP_022922078.1 LOB domain-containing protein 25-like isoform X2 [Cucurbita moschata] >KAG7023106.1 Protein LATERAL ORGAN BOUNDARIES [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 360.1 bits (923), Expect = 1.4e-95
Identity = 175/184 (95.11%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 57  MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 116
           MASSSSYNSPCAACKFLRRKCM GCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 117 HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 176
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIR+ACNEIPN
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120

Query: 177 AGVSQVVQPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEGGG 236
           AGVS VVQP+ GARPRALDQ+HTSSST GYYNQHLPAFPMAYPLPWNENS GN+INEGGG
Sbjct: 121 AGVSHVVQPSPGARPRALDQFHTSSST-GYYNQHLPAFPMAYPLPWNENSPGNDINEGGG 180

Query: 237 DGNI 241
           DGNI
Sbjct: 181 DGNI 183

[Close]

BLAST of ClCG06G017270 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 8.0e-57
Identity = 121/188 (64.36%), Postives = 133/188 (70.74%), Query Frame = 0


Query: 58  ASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPH 117
           +SS+SYNSPCAACKFLRRKCMPGCIFAPYFPPEEP KFANVHKIFGASNVTKLLNELLPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 118 QREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNA 177
           QREDAVNSLAYEAEARVRDPVYGCVGAIS+LQRQV RLQKELDAANADL  +  +     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 178 GVSQVV------QPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYP--LPWNENSSGN 237
               VV      QP    +   L+  +  S  S   NQ       +Y   LPWN     N
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWN-----N 182

[Close]

BLAST of ClCG06G017270 vs. ExPASy Swiss-Prot
Match: Q8L8Q3 (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)

HSP 1 Score: 188.3 bits (477), Expect = 9.8e-47
Identity = 87/111 (78.38%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 60  SSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQR 119
           S+  NSPCAACKFLRRKC   C+FAPYFPPEEP KFANVH+IFGASNV+K+L+E+ PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 120 EDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFA 171
           EDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV RLQ+EL+  NADL+R+A
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]

BLAST of ClCG06G017270 vs. ExPASy Swiss-Prot
Match: O04479 (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.1e-45
Identity = 95/176 (53.98%), Postives = 121/176 (68.75%), Query Frame = 0


Query: 59  SSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQ 118
           +SSS NSPCAACKFLRRKC P C+FAPYFPP++PQKFANVHK+FGASNVTKLLNEL P Q
Sbjct: 2   ASSSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQ 61

Query: 119 REDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAG 178
           REDAVNSLAYEA+ R+RDPVYGCVG IS LQ Q+++LQ +L  A ++L ++      + G
Sbjct: 62  REDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY-----QSLG 121

Query: 179 VSQVVQPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEG 235
           +      +LG    A     T+++   +Y+ H   FP        +  +GNN + G
Sbjct: 122 ILAATHQSLGINLLAGAADGTATAVRDHYHHH-QFFPREQMFGGLDVPAGNNYDGG 171

[Close]

BLAST of ClCG06G017270 vs. ExPASy Swiss-Prot
Match: Q32SG3 (LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-40
Identity = 81/154 (52.60%), Postives = 107/154 (69.48%), Query Frame = 0


Query: 55  ARMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNEL 114
           A  A+     SPCAACKFLRRKC P C+FAPYFPP+ PQKF +VH++FGASNVTKLLNEL
Sbjct: 22  AAAAAVCGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNEL 81

Query: 115 LPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEI 174
            P QREDAVNSLAYEA+ R+RDPVYGCVG IS LQ  +++LQ++L  A  +L ++     
Sbjct: 82  HPFQREDAVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAA 141

Query: 175 PNAGVSQVVQPNLGARPRALDQYHTSSSTSGYYN 209
            +A  +          P+A+ ++  ++  +G +N
Sbjct: 142 ASASTAP-------TGPQAMAEFIGNAMPNGAHN 168

[Close]

BLAST of ClCG06G017270 vs. ExPASy Swiss-Prot
Match: A2WXT0 (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.1e-40
Identity = 79/129 (61.24%), Postives = 95/129 (73.64%), Query Frame = 0


Query: 65  SPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVN 124
           SPCAACKFLRRKC P C+FAPYFPP+ PQKF +VH++FGASNVTKLLNEL P+QREDAVN
Sbjct: 37  SPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVN 96

Query: 125 SLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSQVVQ 184
           SLAYEA+ R+RDPVYGCV  IS LQR +++LQ++L  A  +L ++       A  S    
Sbjct: 97  SLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAAASASTG 156

Query: 185 PNLGARPRA 194
            N G    A
Sbjct: 157 TNNGPHSMA 165

[Close]

BLAST of ClCG06G017270 vs. ExPASy TrEMBL
Match: A0A6J1E5J8 (protein LATERAL ORGAN BOUNDARIES-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430134 PE=3 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 5.3e-96
Identity = 181/221 (81.90%), Postives = 190/221 (85.97%), Query Frame = 0


Query: 20  LHSSSSDQLLNQTSKIFSLSKGKEEKGFKAFLLERARMASSSSYNSPCAACKFLRRKCMP 79
           LHS    +  N+  +    +  K        +    RMASSSSYNSPCAACKFLRRKCM 
Sbjct: 29  LHSEKEKEKKNRNKETVYATSFKR-------IQREGRMASSSSYNSPCAACKFLRRKCMS 88

Query: 80  GCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVY 139
           GCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVY
Sbjct: 89  GCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVY 148

Query: 140 GCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSQVVQPNLGARPRALDQYHT 199
           GCVGAISFLQRQVQRLQKELDAANADLIR+ACNEIPNAGVS VVQP+ GARPRALDQ+HT
Sbjct: 149 GCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPNAGVSHVVQPSPGARPRALDQFHT 208

Query: 200 SSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEGGGDGNI 241
           SSST GYYNQHLPAFPMAYPLPWNENS GN+INEGGGDGNI
Sbjct: 209 SSST-GYYNQHLPAFPMAYPLPWNENSPGNDINEGGGDGNI 241

[Close]

BLAST of ClCG06G017270 vs. ExPASy TrEMBL
Match: A0A6J1E272 (LOB domain-containing protein 25-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430134 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.9e-96
Identity = 175/184 (95.11%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 57  MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 116
           MASSSSYNSPCAACKFLRRKCM GCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 117 HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 176
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIR+ACNEIPN
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120

Query: 177 AGVSQVVQPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEGGG 236
           AGVS VVQP+ GARPRALDQ+HTSSST GYYNQHLPAFPMAYPLPWNENS GN+INEGGG
Sbjct: 121 AGVSHVVQPSPGARPRALDQFHTSSST-GYYNQHLPAFPMAYPLPWNENSPGNDINEGGG 180

Query: 237 DGNI 241
           DGNI
Sbjct: 181 DGNI 183

[Close]

BLAST of ClCG06G017270 vs. ExPASy TrEMBL
Match: A0A6J1JDL4 (LOB domain-containing protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC111485830 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 9.1e-96
Identity = 175/184 (95.11%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 57  MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 116
           MASSSSYNSPCAACKFLRRKCM GCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 117 HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 176
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIR+ACNEIPN
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPN 120

Query: 177 AGVSQVVQPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEGGG 236
           AGVS VVQP+ GARPRALDQYHTSSST GYY+QHLPAFPMAYPLPWNENS GN+INEGGG
Sbjct: 121 AGVSHVVQPSPGARPRALDQYHTSSST-GYYSQHLPAFPMAYPLPWNENSPGNDINEGGG 180

Query: 237 DGNI 241
           DGNI
Sbjct: 181 DGNI 183

[Close]

BLAST of ClCG06G017270 vs. ExPASy TrEMBL
Match: A0A0A0LU81 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G004170 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.6e-92
Identity = 176/186 (94.62%), Postives = 180/186 (96.77%), Query Frame = 0


Query: 57  MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 116
           MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 117 HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 176
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120

Query: 177 AGVS-QVVQP-NLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEG 236
           AGVS QVVQP +LG+RPRALDQYHT SST+GYYN HLPAF MAYPLPWNEN+SGNNINEG
Sbjct: 121 AGVSHQVVQPSSLGSRPRALDQYHT-SSTTGYYN-HLPAFSMAYPLPWNENTSGNNINEG 180

Query: 237 GGDGNI 241
           G DGNI
Sbjct: 181 GRDGNI 184

[Close]

BLAST of ClCG06G017270 vs. ExPASy TrEMBL
Match: A0A5A7URN9 (Protein LATERAL ORGAN BOUNDARIES OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001150 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.1e-92
Identity = 178/187 (95.19%), Postives = 181/187 (96.79%), Query Frame = 0


Query: 57  MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 116
           MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP
Sbjct: 1   MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 60

Query: 117 HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 176
           HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN
Sbjct: 61  HQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPN 120

Query: 177 AGVS-QVVQPNLGA-RPR-ALDQYHTSSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINE 236
           AGVS QVVQP+LG+ RPR ALDQYHT SSTSGYYN HLPAFPMAYPLPWNEN+SGNNINE
Sbjct: 121 AGVSHQVVQPSLGSTRPRAALDQYHT-SSTSGYYN-HLPAFPMAYPLPWNENASGNNINE 180

Query: 237 GGGDGNI 241
           GG DGNI
Sbjct: 181 GGRDGNI 185

[Close]

BLAST of ClCG06G017270 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 221.9 bits (564), Expect = 5.7e-58
Identity = 121/188 (64.36%), Postives = 133/188 (70.74%), Query Frame = 0


Query: 58  ASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPH 117
           +SS+SYNSPCAACKFLRRKCMPGCIFAPYFPPEEP KFANVHKIFGASNVTKLLNELLPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 118 QREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNA 177
           QREDAVNSLAYEAEARVRDPVYGCVGAIS+LQRQV RLQKELDAANADL  +  +     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 178 GVSQVV------QPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYP--LPWNENSSGN 237
               VV      QP    +   L+  +  S  S   NQ       +Y   LPWN     N
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWN-----N 182

[Close]

BLAST of ClCG06G017270 vs. TAIR 10
Match: AT5G63090.3 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 221.9 bits (564), Expect = 5.7e-58
Identity = 121/188 (64.36%), Postives = 133/188 (70.74%), Query Frame = 0


Query: 58  ASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPH 117
           +SS+SYNSPCAACKFLRRKCMPGCIFAPYFPPEEP KFANVHKIFGASNVTKLLNELLPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 118 QREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNA 177
           QREDAVNSLAYEAEARVRDPVYGCVGAIS+LQRQV RLQKELDAANADL  +  +     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 178 GVSQVV------QPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYP--LPWNENSSGN 237
               VV      QP    +   L+  +  S  S   NQ       +Y   LPWN     N
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWN-----N 182

[Close]

BLAST of ClCG06G017270 vs. TAIR 10
Match: AT5G63090.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 221.9 bits (564), Expect = 5.7e-58
Identity = 121/188 (64.36%), Postives = 133/188 (70.74%), Query Frame = 0


Query: 58  ASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPH 117
           +SS+SYNSPCAACKFLRRKCMPGCIFAPYFPPEEP KFANVHKIFGASNVTKLLNELLPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 118 QREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNA 177
           QREDAVNSLAYEAEARVRDPVYGCVGAIS+LQRQV RLQKELDAANADL  +  +     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 178 GVSQVV------QPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYP--LPWNENSSGN 237
               VV      QP    +   L+  +  S  S   NQ       +Y   LPWN     N
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWN-----N 182

[Close]

BLAST of ClCG06G017270 vs. TAIR 10
Match: AT5G63090.4 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 221.9 bits (564), Expect = 5.7e-58
Identity = 121/188 (64.36%), Postives = 133/188 (70.74%), Query Frame = 0


Query: 58  ASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPH 117
           +SS+SYNSPCAACKFLRRKCMPGCIFAPYFPPEEP KFANVHKIFGASNVTKLLNELLPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 118 QREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNA 177
           QREDAVNSLAYEAEARVRDPVYGCVGAIS+LQRQV RLQKELDAANADL  +  +     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 178 GVSQVV------QPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYP--LPWNENSSGN 237
               VV      QP    +   L+  +  S  S   NQ       +Y   LPWN     N
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTFLPWN-----N 182

[Close]

BLAST of ClCG06G017270 vs. TAIR 10
Match: AT3G27650.1 (LOB domain-containing protein 25 )

HSP 1 Score: 188.3 bits (477), Expect = 7.0e-48
Identity = 87/111 (78.38%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 60  SSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQR 119
           S+  NSPCAACKFLRRKC   C+FAPYFPPEEP KFANVH+IFGASNV+K+L+E+ PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 120 EDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFA 171
           EDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV RLQ+EL+  NADL+R+A
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

The following BLAST results are available for this feature:

BLAST of ClCG06G017270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880086.1	6.2e-99	97.84	protein LATERAL ORGAN BOUNDARIES-like [Benincasa hispida]	[more]
KAG6589428.1	2.4e-98	91.96	Protein LATERAL ORGAN BOUNDARIES, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023515750.1	4.9e-96	95.65	protein LATERAL ORGAN BOUNDARIES-like [Cucurbita pepo subsp. pepo]	[more]
XP_022922073.1	1.1e-95	81.90	protein LATERAL ORGAN BOUNDARIES-like isoform X1 [Cucurbita moschata]	[more]
XP_022922076.1	1.4e-95	95.11	LOB domain-containing protein 25-like isoform X2 [Cucurbita moschata] >XP_022922...	[more]

BLAST of ClCG06G017270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FML4	8.0e-57	64.36	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]
Q8L8Q3	9.8e-47	78.38	LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 S...	[more]
O04479	1.1e-45	53.98	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	[more]
Q32SG3	1.8e-40	52.60	LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1	[more]
A2WXT0	3.1e-40	61.24	LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 P...	[more]

BLAST of ClCG06G017270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5J8	5.3e-96	81.90	protein LATERAL ORGAN BOUNDARIES-like isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1E272	6.9e-96	95.11	LOB domain-containing protein 25-like isoform X2 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JDL4	9.1e-96	95.11	LOB domain-containing protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC11148583...	[more]
A0A0A0LU81	1.6e-92	94.62	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G004170 PE=3 SV...	[more]
A0A5A7URN9	2.1e-92	95.19	Protein LATERAL ORGAN BOUNDARIES OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]

BLAST of ClCG06G017270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63090.2	5.7e-58	64.36	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.3	5.7e-58	64.36	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.1	5.7e-58	64.36	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.4	5.7e-58	64.36	Lateral organ boundaries (LOB) domain family protein	[more]
AT3G27650.1	7.0e-48	78.38	LOB domain-containing protein 25	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 145..172
None	No IPR available	PANTHER	PTHR31301:SF82	ELONGATED PETIOLULE 1	coord: 57..239
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 57..239
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 66..163 e-value: 5.2E-42 score: 142.4
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 65..166 score: 27.852367

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G017270.2	ClCG06G017270.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane