ClCG06G015250 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G015250
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr06: 28612708 .. 28613539 (+)
RNA-Seq Expression	ClCG06G015250
Synteny	ClCG06G015250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAAAACAAGAAACAAACACACAAAGGCGAAGAGGTACCGAGCTCGAATGATAGCAAAACGGTTTAAAGTCAAGAAGCTGTCAATAAGGCAAAAGCTTGGCTTCACAGAGAAGCTTGAAAAAGCCACAAAGCAAAGAATGAGAGTTTTTTGTATCAGAAGAACTCTGCCTCAGATCAAATTTGGGATATCATTCACAATTCCAGACAGAATGGCTACAGAGATTAATGACAAGAAGATGATAAGTGGATTACACCCACTGAGAATCACTAGAGTTCCATGTGGTGGGCCAATGGAGTTTCATGAAATTGTAAAAGAAGCTGAGAAAGGTTCAGCTCCATTGAAGAACACGCAGCATGGCAAGCCACCAAATCCTAAAGCATCATATCACAGGAGCTGCTTGAATGAGTGGTGTCCTCAAGTGTTTCATTTCATATCTAATCATTTATTTTGAAATATGGGGTAGGGATATAGACCTCTAACCTCGAGGTCAATAACACAAGTCTTGTGCTAATTGAGCTATGTTGATAACTATTGTTTTTAGTTGAGTTATGCTCACTTTAGCCATTAGTAACTTATTTTAAAAAACATAGGATTAAAAAGATACATTTTAATGACTCAAAGTCTAAAAAGGTAATTTTCTTTACAAGAATTTTCCGATACTATAGGTAGTTTCTCAAACTTTCATCCTTTCATTCCTAATCGTTCATATCTTCCGCTTCATTCTGAATTGTCCAACTGAGGAGAGCATTCAAACACCCACAGAGCAAGCCTTCTACCCATCTATTTCTCAACATTGCTCCCTGGCTACATTGAAGCTCAACCACTGA

mRNA sequence

ATGACCAAAACAAGAAACAAACACACAAAGGCGAAGAGGTACCGAGCTCGAATGATAGCAAAACGGTTTAAAGTCAAGAAGCTGTCAATAAGGCAAAAGCTTGGCTTCACAGAGAAGCTTGAAAAAGCCACAAAGCAAAGAATGAGAGTTTTTTGTATCAGAAGAACTCTGCCTCAGATCAAATTTGGGATATCATTCACAATTCCAGACAGAATGGCTACAGAGATTAATGACAAGAAGATGATAAGTGGATTACACCCACTGAGAATCACTAGAGTTCCATGTGGTGGGCCAATGGAGTTTCATGAAATTGTAAAAGAAGCTGAGAAAGTTTCTCAAACTTTCATCCTTTCATTCCTAATCGTTCATATCTTCCGCTTCATTCTGAATTGTCCAACTGAGGAGAGCATTCAAACACCCACAGAGCAAGCCTTCTACCCATCTATTTCTCAACATTGCTCCCTGGCTACATTGAAGCTCAACCACTGA

Coding sequence (CDS)

ATGACCAAAACAAGAAACAAACACACAAAGGCGAAGAGGTACCGAGCTCGAATGATAGCAAAACGGTTTAAAGTCAAGAAGCTGTCAATAAGGCAAAAGCTTGGCTTCACAGAGAAGCTTGAAAAAGCCACAAAGCAAAGAATGAGAGTTTTTTGTATCAGAAGAACTCTGCCTCAGATCAAATTTGGGATATCATTCACAATTCCAGACAGAATGGCTACAGAGATTAATGACAAGAAGATGATAAGTGGATTACACCCACTGAGAATCACTAGAGTTCCATGTGGTGGGCCAATGGAGTTTCATGAAATTGTAAAAGAAGCTGAGAAAGTTTCTCAAACTTTCATCCTTTCATTCCTAATCGTTCATATCTTCCGCTTCATTCTGAATTGTCCAACTGAGGAGAGCATTCAAACACCCACAGAGCAAGCCTTCTACCCATCTATTTCTCAACATTGCTCCCTGGCTACATTGAAGCTCAACCACTGA

Protein sequence

MTKTRNKHTKAKRYRARMIAKRFKVKKLSIRQKLGFTEKLEKATKQRMRVFCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEKVSQTFILSFLIVHIFRFILNCPTEESIQTPTEQAFYPSISQHCSLATLKLNH

Homology

[Close]

BLAST of ClCG06G015250 vs. NCBI nr
Match: KAG6589576.1 (hypothetical protein SDJN03_14999, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155.6 bits (392), Expect = 3.6e-34
Identity = 86/112 (76.79%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 1   MTKTRNKHTKAKRYRARMIAKRFKVKKLSIRQKLGFTEKLEKATKQRMRVFCIRRTLPQI 60
           M KTR KH+K KR +AR IAK+FKVK LSIRQKLG TEK  K +K+ M  F IRRTLP+ 
Sbjct: 1   MAKTRGKHSKTKRGQARAIAKQFKVKNLSIRQKLGLTEKPAKVSKEGMGFF-IRRTLPR- 60

Query: 61  KFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEKVS 113
           KFGISFTIPDRMATEINDKK ISGLHPLRITRVP GGPMEFH +VKEAEK S
Sbjct: 61  KFGISFTIPDRMATEINDKKRISGLHPLRITRVPSGGPMEFHAVVKEAEKGS 110

[Close]

BLAST of ClCG06G015250 vs. NCBI nr
Match: KGN63749.1 (hypothetical protein Csa_013996 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.4e-30
Identity = 83/113 (73.45%), Postives = 92/113 (81.42%), Query Frame = 0


Query: 1   MTKTRNKHTKA-KRYRARMIAKRFKVKKLSIRQKLGFTEKLEKATKQRMRVFCIRRTLPQ 60
           M KTRNK+ KA KR RAR IAKRF+V+  + RQKL  TEKLE+ +K+RM V    R L +
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFT-RQKLVLTEKLEETSKERMEV----RALHE 60

Query: 61  IKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEKVS 113
           IKFGISFTIPDRMATEI+DKK ISGLHPLRITRVP GGPMEFHEIVKEAEK S
Sbjct: 61  IKFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGS 108

[Close]

BLAST of ClCG06G015250 vs. NCBI nr
Match: KAA0058005.1 (hypothetical protein E6C27_scaffold274G003090 [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 3.0e-28
Identity = 80/113 (70.80%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 1   MTKTRNKHTK-AKRYRARMIAKRFKVKKLSIRQKLGFTEKLEKATKQRMRVFCIRRTLPQ 60
           M KTRNK+TK  KR +AR IAKRF+V K          EKLE+A+K+RM V    RT+ Q
Sbjct: 1   MAKTRNKNTKMKKRDQARTIAKRFRVLK----------EKLEEASKERMEV----RTVHQ 60

Query: 61  IKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEKVS 113
           IKFGISFTIPDRM TEINDKK ISGL PLRITRVPCGGPMEFHEIVKEAEK S
Sbjct: 61  IKFGISFTIPDRMTTEINDKKSISGLRPLRITRVPCGGPMEFHEIVKEAEKGS 99

[Close]

BLAST of ClCG06G015250 vs. NCBI nr
Match: TYK28377.1 (hypothetical protein E5676_scaffold629G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 3.9e-28
Identity = 80/113 (70.80%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 1   MTKTRNKHTK-AKRYRARMIAKRFKVKKLSIRQKLGFTEKLEKATKQRMRVFCIRRTLPQ 60
           M KTRNK+TK  KR +AR IAK+F+V K          EKLE+A+K+RM V    RTL +
Sbjct: 1   MAKTRNKNTKMKKRDQARTIAKQFRVLK----------EKLEEASKERMEV----RTLHK 60

Query: 61  IKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEKVS 113
           IKFGISFTIPDRMATEINDKK ISGL PLRITRVPCGGPMEFHEIVKEAEK S
Sbjct: 61  IKFGISFTIPDRMATEINDKKSISGLRPLRITRVPCGGPMEFHEIVKEAEKGS 99

[Close]

BLAST of ClCG06G015250 vs. NCBI nr
Match: TKY46367.1 (hypothetical protein E2542_SST28406 [Spatholobus suberectus])

HSP 1 Score: 91.7 bits (226), Expect = 6.4e-15
Identity = 42/67 (62.69%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 51  FCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEK 110
           +C  R+ P+ KFGISFT+PDR+ +EINDKK I G HPLRITR+P GGP+EFH+I++EAEK
Sbjct: 5   YCAIRSQPR-KFGISFTVPDRVTSEINDKKRIMGKHPLRITRIPSGGPIEFHKIMQEAEK 64

Query: 111 VSQTFIL 118
            S  + L
Sbjct: 65  GSSPWSL 70

[Close]

BLAST of ClCG06G015250 vs. ExPASy TrEMBL
Match: A0A0A0LRV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014460 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 83/113 (73.45%), Postives = 92/113 (81.42%), Query Frame = 0


Query: 1   MTKTRNKHTKA-KRYRARMIAKRFKVKKLSIRQKLGFTEKLEKATKQRMRVFCIRRTLPQ 60
           M KTRNK+ KA KR RAR IAKRF+V+  + RQKL  TEKLE+ +K+RM V    R L +
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFT-RQKLVLTEKLEETSKERMEV----RALHE 60

Query: 61  IKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEKVS 113
           IKFGISFTIPDRMATEI+DKK ISGLHPLRITRVP GGPMEFHEIVKEAEK S
Sbjct: 61  IKFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGS 108

[Close]

BLAST of ClCG06G015250 vs. ExPASy TrEMBL
Match: A0A5A7UWL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003090 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 80/113 (70.80%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 1   MTKTRNKHTK-AKRYRARMIAKRFKVKKLSIRQKLGFTEKLEKATKQRMRVFCIRRTLPQ 60
           M KTRNK+TK  KR +AR IAKRF+V K          EKLE+A+K+RM V    RT+ Q
Sbjct: 1   MAKTRNKNTKMKKRDQARTIAKRFRVLK----------EKLEEASKERMEV----RTVHQ 60

Query: 61  IKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEKVS 113
           IKFGISFTIPDRM TEINDKK ISGL PLRITRVPCGGPMEFHEIVKEAEK S
Sbjct: 61  IKFGISFTIPDRMTTEINDKKSISGLRPLRITRVPCGGPMEFHEIVKEAEKGS 99

[Close]

BLAST of ClCG06G015250 vs. ExPASy TrEMBL
Match: A0A5D3DX07 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00030 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.9e-28
Identity = 80/113 (70.80%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 1   MTKTRNKHTK-AKRYRARMIAKRFKVKKLSIRQKLGFTEKLEKATKQRMRVFCIRRTLPQ 60
           M KTRNK+TK  KR +AR IAK+F+V K          EKLE+A+K+RM V    RTL +
Sbjct: 1   MAKTRNKNTKMKKRDQARTIAKQFRVLK----------EKLEEASKERMEV----RTLHK 60

Query: 61  IKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEKVS 113
           IKFGISFTIPDRMATEINDKK ISGL PLRITRVPCGGPMEFHEIVKEAEK S
Sbjct: 61  IKFGISFTIPDRMATEINDKKSISGLRPLRITRVPCGGPMEFHEIVKEAEKGS 99

[Close]

BLAST of ClCG06G015250 vs. ExPASy TrEMBL
Match: G7KP67 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_6g026830 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 9.0e-15
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 51  FCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEK 110
           FC  R+ P+ KFGI+FTIPDR+ +EINDKK I G +PLRITR+P GGP EFH +V+EAEK
Sbjct: 5   FCTIRSRPR-KFGITFTIPDRITSEINDKKRIIGKNPLRITRIPSGGPREFHNLVQEAEK 64

Query: 111 VSQTFI 117
            S T +
Sbjct: 65  GSSTIL 69

[Close]

BLAST of ClCG06G015250 vs. ExPASy TrEMBL
Match: A0A2P5F4J0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_115550 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.0e-14
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 51  FCIRRTLPQIKFGISFTIPDRMATEINDKKMISGLHPLRITRVPCGGPMEFHEIVKEAEK 110
           FC  R  P+ KFGISF +PDR+A EI+DKK I G HP+RITR+P GGP EFH +V+EAEK
Sbjct: 3   FCALRAQPK-KFGISFIVPDRLAVEISDKKTIVGKHPMRITRIPLGGPTEFHRVVEEAEK 62

Query: 111 VSQ 114
            S+
Sbjct: 63  ESR 64

The following BLAST results are available for this feature:

BLAST of ClCG06G015250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589576.1	3.6e-34	76.79	hypothetical protein SDJN03_14999, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN63749.1	2.4e-30	73.45	hypothetical protein Csa_013996 [Cucumis sativus]	[more]
KAA0058005.1	3.0e-28	70.80	hypothetical protein E6C27_scaffold274G003090 [Cucumis melo var. makuwa]	[more]
TYK28377.1	3.9e-28	70.80	hypothetical protein E5676_scaffold629G00030 [Cucumis melo var. makuwa]	[more]
TKY46367.1	6.4e-15	62.69	hypothetical protein E2542_SST28406 [Spatholobus suberectus]	[more]

BLAST of ClCG06G015250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG06G015250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRV9	1.2e-30	73.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014460 PE=4 SV=1	[more]
A0A5A7UWL1	1.4e-28	70.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DX07	1.9e-28	70.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
G7KP67	9.0e-15	63.64	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_6g026830 PE=4 SV=1	[more]
A0A2P5F4J0	2.0e-14	63.49	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_115550 PE=4 SV...	[more]

BLAST of ClCG06G015250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G015250.2	ClCG06G015250.2	mRNA