ClCG06G014990 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G014990
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	40S ribosomal protein S28
Location	CG_Chr06: 28375819 .. 28376860 (+)
RNA-Seq Expression	ClCG06G014990
Synteny	ClCG06G014990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGTATATTCGTCTTCACACACGATCAGAAACCCTAGTTATGTTAGTATTTGGCTCCTCTATAGTTACATTGGTCGATTCTGCAATCCGGCGGCTTGTCTACAATTCTACAAAGTTCTCTCCGTCCTCTTCCTCTTTCTCTCTCGTCTAAGGTTAGTATCGACTCCCTTCTTCGGTGTACGGTGATCTCTTTGGCTCGTTGTTCTGTTCCGAATCCATAGCATTGGCAGCGGTTCGGCTTTGAATTCTCTCGAAGATAGTTAGTTGACAAATTACTGCATTTACTATTCAGTTTTGAATCTTTCGTTCGTTGTTTGTATGATTTTGTTTTCACGATTGGATTCTTACTCTGAAGAAAGTTTCCGACTAATTATTAGATGGAGAACCGTAGTACTGTTTCTATATGTTTCATATTTGACAGATGATTATTGAGATTCAGATTCGAGATTTTTAGATTTATCGTTCTTAGTCTTGCAGGAGATTGTTTATGAGTTGAAAACCTTGTTATTCTATACTATGCAGACATTTTCCTCGGTGTCTTGGTTCATAGTATTGAAGTAATGAGAATTGTAATTCGCATATCTGCTGAAAAAGATGGTCTCTTCTGCACTTATATAATTTCATAGAATATTCTGCACTGACATTCATAAGTTTTTCTGTTTTCCATTAGTTTACTTTTCCTAAAACTTCAAATTAAGTTGTTCAAATTGGGAAGTGGAGCTGTAGAAGTAGTAATTGGTGGGTGGTGGTAGATTGTTTTGCAAAAAGCTACTTAGATTGTTTATAAAGGAAAAGGTTCTTGGATTGTGTAAGATTAAGTTATTGGTGTGTTTGTGCAGGCATGGAATCCCAGATCAAGCATGCTGTGGTGGTGAAAGTGATGGGTAGAACTGGATCAAGGGGGCAAGTGACTCAAGTGAGAGTTAAGTTTCTAGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGATATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTGA

mRNA sequence

ATGGGGGTATATTCGTCTTCACACACGATCAGAAACCCTAGTTATGTTAGTATTTGGCTCCTCTATAGTTACATTGGTCGATTCTGCAATCCGGCGGCTTGTCTACAATTCTACAAAGTTCTCTCCGTCCTCTTCCTCTTTCTCTCTCGTCTAAGTTTACTTTTCCTAAAACTTCAAATTAAGTTGTTCAAATTGGGAAGTGGAGCTGTAGAAGTAGTAATTGGCATGGAATCCCAGATCAAGCATGCTGTGGTGGTGAAAGTGATGGGTAGAACTGGATCAAGGGGGCAAGTGACTCAAGTGAGAGTTAAGTTTCTAGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGATATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTGA

Coding sequence (CDS)

ATGGGGGTATATTCGTCTTCACACACGATCAGAAACCCTAGTTATGTTAGTATTTGGCTCCTCTATAGTTACATTGGTCGATTCTGCAATCCGGCGGCTTGTCTACAATTCTACAAAGTTCTCTCCGTCCTCTTCCTCTTTCTCTCTCGTCTAAGTTTACTTTTCCTAAAACTTCAAATTAAGTTGTTCAAATTGGGAAGTGGAGCTGTAGAAGTAGTAATTGGCATGGAATCCCAGATCAAGCATGCTGTGGTGGTGAAAGTGATGGGTAGAACTGGATCAAGGGGGCAAGTGACTCAAGTGAGAGTTAAGTTTCTAGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGATATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTGA

Protein sequence

MGVYSSSHTIRNPSYVSIWLLYSYIGRFCNPAACLQFYKVLSVLFLFLSRLSLLFLKLQIKLFKLGSGAVEVVIGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Homology

[Close]

BLAST of ClCG06G014990 vs. NCBI nr
Match: XP_022922061.1 (40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 75  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 134
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 44  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 103

Query: 135 EARRLR 141
           EARRLR
Sbjct: 104 EARRLR 109

[Close]

BLAST of ClCG06G014990 vs. NCBI nr
Match: KAG7023246.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 75  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 134
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 34  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 93

Query: 135 EARRLR 141
           EARRLR
Sbjct: 94  EARRLR 99

[Close]

BLAST of ClCG06G014990 vs. NCBI nr
Match: XP_022922062.1 (40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 75  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 134
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 41  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 100

Query: 135 EARRLR 141
           EARRLR
Sbjct: 101 EARRLR 106

[Close]

BLAST of ClCG06G014990 vs. NCBI nr
Match: KAG6595421.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.3 bits (321), Expect = 5.4e-26
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 75  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 134
           GMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 47  GMESQIKHAMVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 106

Query: 135 EARRLR 141
           EARRLR
Sbjct: 107 EARRLR 112

[Close]

BLAST of ClCG06G014990 vs. NCBI nr
Match: XP_022134697.1 (40S ribosomal protein S28-1-like [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-25
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 56  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 115

Query: 136 ARRLR 141
           ARRLR
Sbjct: 116 ARRLR 120

[Close]

BLAST of ClCG06G014990 vs. ExPASy Swiss-Prot
Match: P46302 (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of ClCG06G014990 vs. ExPASy Swiss-Prot
Match: Q9SR73 (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of ClCG06G014990 vs. ExPASy Swiss-Prot
Match: P34789 (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-23
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of ClCG06G014990 vs. ExPASy Swiss-Prot
Match: Q6PBK3 (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 80  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 139
           IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 140 R 141
           R
Sbjct: 69  R 69

[Close]

BLAST of ClCG06G014990 vs. ExPASy Swiss-Prot
Match: Q90YP3 (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 80  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 139
           IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 140 R 141
           R
Sbjct: 69  R 69

[Close]

BLAST of ClCG06G014990 vs. ExPASy TrEMBL
Match: A0A6J1E226 (40S ribosomal protein S28-1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430126 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 75  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 134
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 41  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 100

Query: 135 EARRLR 141
           EARRLR
Sbjct: 101 EARRLR 106

[Close]

BLAST of ClCG06G014990 vs. ExPASy TrEMBL
Match: A0A6J1E336 (40S ribosomal protein S28-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430126 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 75  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 134
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 44  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 103

Query: 135 EARRLR 141
           EARRLR
Sbjct: 104 EARRLR 109

[Close]

BLAST of ClCG06G014990 vs. ExPASy TrEMBL
Match: A0A6J1HTG7 (40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.8e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of ClCG06G014990 vs. ExPASy TrEMBL
Match: A0A0A0LPR2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.8e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of ClCG06G014990 vs. ExPASy TrEMBL
Match: A0A1S3CD61 (40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.8e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of ClCG06G014990 vs. TAIR 10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of ClCG06G014990 vs. TAIR 10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of ClCG06G014990 vs. TAIR 10
Match: AT5G64140.1 (ribosomal protein S28 )

HSP 1 Score: 110.9 bits (276), Expect = 8.2e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 76  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 135
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 136 ARRLR 141
           ARRLR
Sbjct: 61  ARRLR 64

The following BLAST results are available for this feature:

BLAST of ClCG06G014990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922061.1	2.4e-26	100.00	40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata]	[more]
KAG7023246.1	2.4e-26	100.00	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022922062.1	2.4e-26	100.00	40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata]	[more]
KAG6595421.1	5.4e-26	98.48	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022134697.1	1.2e-25	100.00	40S ribosomal protein S28-1-like [Momordica charantia]	[more]

BLAST of ClCG06G014990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46302	1.4e-24	90.77	40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1	[more]
Q9SR73	3.1e-24	92.31	40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1	[more]
P34789	1.2e-23	89.23	40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1	[more]
Q6PBK3	2.3e-19	80.33	40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1	[more]
Q90YP3	2.3e-19	80.33	40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1	[more]

BLAST of ClCG06G014990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E226	1.2e-26	100.00	40S ribosomal protein S28-1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1E336	1.2e-26	100.00	40S ribosomal protein S28-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1HTG7	5.8e-26	100.00	40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=...	[more]
A0A0A0LPR2	5.8e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1	[more]
A0A1S3CD61	5.8e-26	100.00	40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1	[more]

BLAST of ClCG06G014990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10090.1	2.2e-25	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	2.2e-25	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	8.2e-25	89.23	ribosomal protein S28	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 79..139 e-value: 1.1E-31 score: 108.5
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 76..140
IPR000289	Ribosomal protein S28e	HAMAP	MF_00292	Ribosomal_S28e	coord: 76..140 score: 21.430906
IPR000289	Ribosomal protein S28e	CDD	cd04457	S1_S28E	coord: 81..140 e-value: 3.76251E-35 score: 114.269
None	No IPR available	GENE3D	2.40.50.140		coord: 75..140 e-value: 8.0E-36 score: 123.7
None	No IPR available	PANTHER	PTHR10769:SF3	40S RIBOSOMAL PROTEIN S28	coord: 76..140
IPR028626	Ribosomal protein S28e conserved site	PROSITE	PS00961	RIBOSOMAL_S28E	coord: 131..139
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 76..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G014990.2	ClCG06G014990.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0006508	proteolysis
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003735	structural constituent of ribosome