ClCG06G014670 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG06G014670
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionATP synthase subunit a
LocationCG_Chr06: 28122224 .. 28124041 (-)
RNA-Seq ExpressionClCG06G014670
SyntenyClCG06G014670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTAGCACCTTTTTTAGTACTCCTTGAGCTAATCCTTCATTGTTTTCGCGCATTAAGCTCAAGAATACATTTATTTGCTAATATAATGGCCGGTCATAGTTCAGTAAAGATTTTAATTGGGTCCACTTGGACTATGCTATGTATGAATAATCTTTTCTATTTCATAGGAGATCTTGGTCCTTTATTTATAGTTTTTGCATTATCATTTTTTTAAAAAAATACAATTTCAGTTTACATTTTAAATCTGAGTAAAAAAAAAAGTTTTTTTTACACAAAAATGTCACTGTTTATTAAAGATATACACTATAGTATCTATCATCAATAGATAGTGATAGATGACAGTAGTCTATCGTTATCTATCACTAATAAACATTGATATTTTGTTATATTTGTAAATAAGTGGCTCATTTTGTTATATTTGAAAACAACCCCTTTAAAAAATATTAAAAATATGAAAAGGGTTCTTAAATTTTGGTTAAATTGTCATTTTGGCATTTATACATAGTAGTTTGTTCAATTTTAGTCTTTGTATTTTTAAATGTTCAATTTTAGTCTACTATAATATCATTTAGTGTATTAAATTTATTTTTATCAAAATTGGTTAAATAATAATAATAGCTATAGAAAATAAAACGTGTGAATATATTTTTAAAATCAATAAAAAATTATTAATATTGACTAAATTTTAAATTTTATTTGTATATAGACTTAAGTTTATGAGTGGATTGTTGTAATATTTTAGAAATCTTTTAAAAAGAGAAGAAAATAAAGGACAACTTAGACACTATTATACCTAAACACTATATATATATTTATGATTTGAAGAACTATTAAATTATAATAAATAGATGTTCATGCCTGTCCAAAAATTTCTCTGTCCCAACAATTAATATGTCAAATTTTGGACAAACGTGGGATGCCATTCAACAATAAATACAAAATTGGGCTTCTTTCAATAAATAAATAAATACAAAATTAGGCATTAAACTCGATTTTGTAGAGAAAGGTGGAAAAGAATGTGACGCTAATACTTTTATCTCAAGCGTTAAATCACAATAATTAAAGCAGTAAAGTAAAATTAAAAGCGATGCAGGAGTTTGGGGGCACACAAGAGGTGCGTGCTGAGTATGCCACCGTCAATGTTGGCACGTGACCAACCCACTTTCCCACGAGCCCTTCCAAGCTAACGCCGCAACCGCTCAACCCAATATTCCAAAATTCTCATCCCCTAAAAAGCTCTTTCTTGATTGCTTCAATTTAAATATTTCCCTTCATCAAATTCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTTCTTCTTCTAATGAATTAACAAAATCAATAAAGAATTGGCTTGTCCATGTCAACAACCCTCAACTAACCCCAATTTAAATAAAATCCCATTAAGTTTACTATTCTGAATAAAAATGGTGAGGTTTACTAATTCTTTTAGGGTGAGATCTCCAATATGTCACCTTTTTAGGTTTATTATTTTTGTTTTGATACCATAATAGATATAATGTTATAAGTAATTTTGAACTAAAAGGCATAATCGATGTCAAGCACGAACAATACAATAAAGCCAAGAGAATAGCATGATTTGGGCTAAAAATGGCAGCTTAGGACCAGTACGAGCCTAGGAAAAAGGCTCGCTTGGGCCTTGGCTTAATGGGCATGCCTTATGCATGCCCTAACCGAAATGATCATCTAAGACCAGAGATATGGCTAAAGAAATGTGCTCGGCCTTGGCCTTGGCTGAAGCCGATCCTAGAAAAATACCAAACGAGGTACGCCCCGACTCAATAG

mRNA sequence

ATGCCATTAGCACCTTTTTTAGTACTCCTTGAGCTAATCCTTCATTGTTTTCGCGCATTAAGCTCAAGAATACATTTATTTGCTAATATAATGGCCGGTCATAGTTCAGAGTTTGGGGGCACACAAGAGGTGCGTGCTGAGTATGCCACCGTCAATGTTGGCACGAAAAAGGCTCGCTTGGGCCTTGGCTTAATGGGCATGCCTTATGCATGCCCTAACCGAAATGATCATCTAAGACCAGAGATATGGCTAAAGAAATGTGCTCGGCCTTGGCCTTGGCTGAAGCCGATCCTAGAAAAATACCAAACGAGGTACGCCCCGACTCAATAG

Coding sequence (CDS)

ATGCCATTAGCACCTTTTTTAGTACTCCTTGAGCTAATCCTTCATTGTTTTCGCGCATTAAGCTCAAGAATACATTTATTTGCTAATATAATGGCCGGTCATAGTTCAGAGTTTGGGGGCACACAAGAGGTGCGTGCTGAGTATGCCACCGTCAATGTTGGCACGAAAAAGGCTCGCTTGGGCCTTGGCTTAATGGGCATGCCTTATGCATGCCCTAACCGAAATGATCATCTAAGACCAGAGATATGGCTAAAGAAATGTGCTCGGCCTTGGCCTTGGCTGAAGCCGATCCTAGAAAAATACCAAACGAGGTACGCCCCGACTCAATAG

Protein sequence

MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHSSEFGGTQEVRAEYATVNVGTKKARLGLGLMGMPYACPNRNDHLRPEIWLKKCARPWPWLKPILEKYQTRYAPTQ
Homology
[Close]
BLAST of ClCG06G014670 vs. NCBI nr
Match: ACD02155.1 (ATPase subunit 6, partial [Celastrus scandens])

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-06
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHSS 37
           MPLAPFLVLLELI HCFRALSS I LFAN+MAGHSS
Sbjct: 121 MPLAPFLVLLELISHCFRALSSGIRLFANMMAGHSS 156

[Close]
BLAST of ClCG06G014670 vs. NCBI nr
Match: AUD39157.1 (ATP synthase F0 subunit 6, partial [Guettarda scabra])

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-06
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHSS 37
           +PLAPFLVLLELI HCFRALSS I LFAN+MAGHSS
Sbjct: 154 LPLAPFLVLLELISHCFRALSSGIRLFANMMAGHSS 189

[Close]
BLAST of ClCG06G014670 vs. NCBI nr
Match: ABI74638.2 (ATPase subunit 6 [Tripsacum dactyloides])

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-06
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHSS 37
           +PLAPFLVLLELI HCFRALSS I LFAN+MAGHSS
Sbjct: 296 LPLAPFLVLLELISHCFRALSSGIRLFANMMAGHSS 331

[Close]
BLAST of ClCG06G014670 vs. NCBI nr
Match: QFO90905.1 (ATPase subunit 6 [Cynodon dactylon x Cynodon transvaalensis])

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-06
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHSS 37
           +PLAPFLVLLELI HCFRALSS I LFAN+MAGHSS
Sbjct: 331 LPLAPFLVLLELISHCFRALSSGIRLFANMMAGHSS 366

[Close]
BLAST of ClCG06G014670 vs. NCBI nr
Match: AUD39149.1 (ATP synthase F0 subunit 6, partial [Cinchona pubescens] >AUD39176.1 ATP synthase F0 subunit 6, partial [Sipanea sp. Rova et al. 1981])

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-06
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHSS 37
           +PLAPFLVLLELI HCFRALSS I LFAN+MAGHSS
Sbjct: 154 LPLAPFLVLLELISHCFRALSSGIRLFANMMAGHSS 189

[Close]
BLAST of ClCG06G014670 vs. ExPASy Swiss-Prot
Match: P07925 (ATP synthase subunit a OS=Zea mays OX=4577 GN=ATP6 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHSS 37
           +PLAPFLVLLELI HCFRALSS I LFAN+MAGHSS
Sbjct: 178 LPLAPFLVLLELISHCFRALSSGIRLFANMMAGHSS 213

[Close]
BLAST of ClCG06G014670 vs. ExPASy Swiss-Prot
Match: P05499 (ATP synthase subunit a OS=Nicotiana tabacum OX=4097 GN=ATP6 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.9e-08
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHSS 37
           +PLAPFLVLLELI +CFRALSS I LFAN+MAGHSS
Sbjct: 284 LPLAPFLVLLELIPYCFRALSSGIRLFANMMAGHSS 319

[Close]
BLAST of ClCG06G014670 vs. ExPASy Swiss-Prot
Match: P93298 (ATP synthase subunit a-1 OS=Arabidopsis thaliana OX=3702 GN=ATP6-1 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 7.7e-07
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHS 36
           +PLAPFLVLLELI +CFRALS  I LFAN+MAGHS
Sbjct: 287 LPLAPFLVLLELISYCFRALSLGIRLFANMMAGHS 321

[Close]
BLAST of ClCG06G014670 vs. ExPASy Swiss-Prot
Match: P92547 (ATP synthase subunit a-2 OS=Arabidopsis thaliana OX=3702 GN=ATP6-2 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 7.7e-07
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHS 36
           +PLAPFLVLLELI +CFRALS  I LFAN+MAGHS
Sbjct: 251 LPLAPFLVLLELISYCFRALSLGIRLFANMMAGHS 285

[Close]
BLAST of ClCG06G014670 vs. ExPASy Swiss-Prot
Match: Q31720 (ATP synthase subunit a OS=Brassica napus OX=3708 GN=ATP6 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.7e-07
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHS 36
           +PLAPFLVLLELI +CFRALS  I LFAN+MAGHS
Sbjct: 162 LPLAPFLVLLELISYCFRALSLGIRLFANMMAGHS 196

[Close]
BLAST of ClCG06G014670 vs. ExPASy TrEMBL
Match: B2VPT7 (ATP synthase subunit a (Fragment) OS=Celastrus scandens OX=123407 GN=atp6 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-06
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHSS 37
           MPLAPFLVLLELI HCFRALSS I LFAN+MAGHSS
Sbjct: 121 MPLAPFLVLLELISHCFRALSSGIRLFANMMAGHSS 156

[Close]
BLAST of ClCG06G014670 vs. ExPASy TrEMBL
Match: A0A4Y5QHU9 (ATP synthase subunit a OS=Alloteropsis semialata OX=435756 GN=atp6 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-06
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHSS 37
           +PLAPFLVLLELI HCFRALSS I LFAN+MAGHSS
Sbjct: 139 LPLAPFLVLLELISHCFRALSSGIRLFANMMAGHSS 174

[Close]
BLAST of ClCG06G014670 vs. ExPASy TrEMBL
Match: A0A2I8BIH3 (ATP synthase subunit a OS=Oryza coarctata OX=77588 GN=atp6 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-06
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHSS 37
           +PLAPFLVLLELI HCFRALSS I LFAN+MAGHSS
Sbjct: 267 LPLAPFLVLLELISHCFRALSSGIRLFANMMAGHSS 302

[Close]
BLAST of ClCG06G014670 vs. ExPASy TrEMBL
Match: H5ZXG8 (ATP synthase subunit a OS=Oryza sativa subsp. indica OX=39946 GN=atp6 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-06
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHSS 37
           +PLAPFLVLLELI HCFRALSS I LFAN+MAGHSS
Sbjct: 236 LPLAPFLVLLELISHCFRALSSGIRLFANMMAGHSS 271

[Close]
BLAST of ClCG06G014670 vs. ExPASy TrEMBL
Match: Q2F976 (ATP synthase subunit a OS=Oryza sativa subsp. indica OX=39946 GN=atp6 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-06
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHSS 37
           +PLAPFLVLLELI HCFRALSS I LFAN+MAGHSS
Sbjct: 236 LPLAPFLVLLELISHCFRALSSGIRLFANMMAGHSS 271

[Close]
BLAST of ClCG06G014670 vs. TAIR 10
Match: AT2G07741.1 (ATPase, F0 complex, subunit A protein )

HSP 1 Score: 54.7 bits (130), Expect = 5.5e-08
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHS 36
           +PLAPFLVLLELI +CFRALS  I LFAN+MAGHS
Sbjct: 287 LPLAPFLVLLELISYCFRALSLGIRLFANMMAGHS 321

[Close]
BLAST of ClCG06G014670 vs. TAIR 10
Match: ATMG01170.1 (ATPase, F0 complex, subunit A protein )

HSP 1 Score: 54.7 bits (130), Expect = 5.5e-08
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHS 36
           +PLAPFLVLLELI +CFRALS  I LFAN+MAGHS
Sbjct: 251 LPLAPFLVLLELISYCFRALSLGIRLFANMMAGHS 285

[Close]
BLAST of ClCG06G014670 vs. TAIR 10
Match: ATMG00410.1 (ATPase subunit 6-1 )

HSP 1 Score: 54.7 bits (130), Expect = 5.5e-08
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 1   MPLAPFLVLLELILHCFRALSSRIHLFANIMAGHS 36
           +PLAPFLVLLELI +CFRALS  I LFAN+MAGHS
Sbjct: 287 LPLAPFLVLLELISYCFRALSLGIRLFANMMAGHS 321

The following BLAST results are available for this feature:
BLAST of ClCG06G014670 vs. NCBI nr
Match NameE-valueIdentityDescription
ACD02155.13.7e-0688.89ATPase subunit 6, partial [Celastrus scandens][more]
AUD39157.18.2e-0686.11ATP synthase F0 subunit 6, partial [Guettarda scabra][more]
ABI74638.28.2e-0686.11ATPase subunit 6 [Tripsacum dactyloides][more]
QFO90905.18.2e-0686.11ATPase subunit 6 [Cynodon dactylon x Cynodon transvaalensis][more]
AUD39149.18.2e-0686.11ATP synthase F0 subunit 6, partial [Cinchona pubescens] >AUD39176.1 ATP synthase... [more]
BLAST of ClCG06G014670 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P079251.1e-0886.11ATP synthase subunit a OS=Zea mays OX=4577 GN=ATP6 PE=3 SV=1[more]
P054996.9e-0883.33ATP synthase subunit a OS=Nicotiana tabacum OX=4097 GN=ATP6 PE=3 SV=1[more]
P932987.7e-0780.00ATP synthase subunit a-1 OS=Arabidopsis thaliana OX=3702 GN=ATP6-1 PE=2 SV=2[more]
P925477.7e-0780.00ATP synthase subunit a-2 OS=Arabidopsis thaliana OX=3702 GN=ATP6-2 PE=2 SV=2[more]
Q317207.7e-0780.00ATP synthase subunit a OS=Brassica napus OX=3708 GN=ATP6 PE=2 SV=1[more]
BLAST of ClCG06G014670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
B2VPT71.8e-0688.89ATP synthase subunit a (Fragment) OS=Celastrus scandens OX=123407 GN=atp6 PE=3 S... [more]
A0A4Y5QHU94.0e-0686.11ATP synthase subunit a OS=Alloteropsis semialata OX=435756 GN=atp6 PE=3 SV=1[more]
A0A2I8BIH34.0e-0686.11ATP synthase subunit a OS=Oryza coarctata OX=77588 GN=atp6 PE=3 SV=1[more]
H5ZXG84.0e-0686.11ATP synthase subunit a OS=Oryza sativa subsp. indica OX=39946 GN=atp6 PE=3 SV=1[more]
Q2F9764.0e-0686.11ATP synthase subunit a OS=Oryza sativa subsp. indica OX=39946 GN=atp6 PE=3 SV=1[more]
BLAST of ClCG06G014670 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G07741.15.5e-0880.00ATPase, F0 complex, subunit A protein [more]
ATMG01170.15.5e-0880.00ATPase, F0 complex, subunit A protein [more]
ATMG00410.15.5e-0880.00ATPase subunit 6-1 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035908ATP synthase, F0 complex, subunit A superfamilyGENE3D1.20.120.220ATP synthase, F0 complex, subunit Acoord: 1..36
e-value: 4.0E-5
score: 25.8
IPR035908ATP synthase, F0 complex, subunit A superfamilySUPERFAMILY81336F1F0 ATP synthase subunit Acoord: 2..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G014670.1ClCG06G014670.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function GO:0015078 proton transmembrane transporter activity