ClCG06G013960 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG06G013960
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionMethionine--tRNA ligase
LocationCG_Chr06: 27401971 .. 27402577 (-)
RNA-Seq ExpressionClCG06G013960
SyntenyClCG06G013960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTAAACAAGAACCAACACCATTTGTCGTCAAAAGATATCCAATTATCGTACGACCCAAAAGCTTTGAACATGATTTTGAGATACTCAACTCATCAATGGTGGCCGTCGTTGATGACGACGTCCCACTTTCCATCTCAATGGACCGAGCCGAATCGACTTGGTTTTTCTCGTTCAAGTATTTGAACCGGCGAGAGAGTTGGAACCCGACGGCAGAGACGAAGACTTCGCCGCCGAGGAACATGAGGGTGGTGATGATGAGGAGTTGGAAATTGGAAAAAACTTCCATTTCAATGACAGACATGCTTGAAACGGAGACGGCAGAGACGGAGGTGAAGAAAATGTTGAGGTCATTTGGGGAGGAGGAGTTTCTAGTTTTGGTGAGCTTTAGAGCTCCAAAGCCTAAGAGAGAGATGGTTATGAAATAGGAGAGGTGAGACAAGAAGGGGCTGGCGACCGGTAGCGGCAACCGGAGAAGAGAACGCGGAGGAGATCGGAGGATGTAGAGAGGTAAGTTCTTCATGTTGGGGTTTTGTGCGGCGGTTGGAAGATGGCCGGCCGGGGAGATTTGGAGGAAGGAGAGTGGAGTGGAGGGGATTATAA

mRNA sequence

ATGAAGATTAAACAAGAACCAACACCATTTGTCGTCAAAAGATATCCAATTATCGTACGACCCAAAAGCTTTGAACATGATTTTGAGATACTCAACTCATCAATGGTGGCCGTCGTTGATGACGACGTCCCACTTTCCATCTCAATGGACCGAGCCGAATCGACTTGGTTTTTCTCGTTCAAGTATTTGAACCGGCGAGAGAGTTGGAACCCGACGGCAGAGACGAAGACTTCGCCGCCGAGGAACATGAGGGTGGTGATGATGAGGAGTTGGAAATTGGAAAAAACTTCCATTTCAATGACAGACATGCTTGAAACGGAGACGGCAGAGACGGAGGTGAAGAAAATGTTGAGGTCATTTGGGGAGGAGGAGTTTCTAGTTTTGGTGAGCTTTAGAGCTCCAAAGCCTAAGAGAGAGATGACAAGAAGGGGCTGGCGACCGGTAGCGGCAACCGGAGAAGAGAACGCGGAGGAGATCGGAGGATGTAGAGAGGTAAGTTCTTCATGTTGGGGTTTTGTGCGGCGGTTGGAAGATGGCCGGCCGGGGAGATTTGGAGGAAGGAGAGTGGAGTGGAGGGGATTATAA

Coding sequence (CDS)

ATGAAGATTAAACAAGAACCAACACCATTTGTCGTCAAAAGATATCCAATTATCGTACGACCCAAAAGCTTTGAACATGATTTTGAGATACTCAACTCATCAATGGTGGCCGTCGTTGATGACGACGTCCCACTTTCCATCTCAATGGACCGAGCCGAATCGACTTGGTTTTTCTCGTTCAAGTATTTGAACCGGCGAGAGAGTTGGAACCCGACGGCAGAGACGAAGACTTCGCCGCCGAGGAACATGAGGGTGGTGATGATGAGGAGTTGGAAATTGGAAAAAACTTCCATTTCAATGACAGACATGCTTGAAACGGAGACGGCAGAGACGGAGGTGAAGAAAATGTTGAGGTCATTTGGGGAGGAGGAGTTTCTAGTTTTGGTGAGCTTTAGAGCTCCAAAGCCTAAGAGAGAGATGACAAGAAGGGGCTGGCGACCGGTAGCGGCAACCGGAGAAGAGAACGCGGAGGAGATCGGAGGATGTAGAGAGGTAAGTTCTTCATGTTGGGGTTTTGTGCGGCGGTTGGAAGATGGCCGGCCGGGGAGATTTGGAGGAAGGAGAGTGGAGTGGAGGGGATTATAA

Protein sequence

MKIKQEPTPFVVKRYPIIVRPKSFEHDFEILNSSMVAVVDDDVPLSISMDRAESTWFFSFKYLNRRESWNPTAETKTSPPRNMRVVMMRSWKLEKTSISMTDMLETETAETEVKKMLRSFGEEEFLVLVSFRAPKPKREMTRRGWRPVAATGEENAEEIGGCREVSSSCWGFVRRLEDGRPGRFGGRRVEWRGL
Homology
[Close]
BLAST of ClCG06G013960 vs. NCBI nr
Match: CAB4262018.1 (unnamed protein product [Prunus armeniaca] >CAB4292601.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-07
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 0 

Query: 74  ETKTSPPRNMRVVMMRSWKLEKTSISMTDMLETETAETEVKKMLRSFGEEEFLVL--VSF 133
           E KTSPP N+++V M SW LEKTSIS  DMLET  AETEVK   +  G +E  VL   + 
Sbjct: 2   EVKTSPPMNIKMVKMMSWALEKTSISTVDMLETVEAETEVKNKSKFLGRKEGSVLDFKAL 61

Query: 134 RAPKPKRE 140
           R PKP++E
Sbjct: 62  RTPKPRKE 69

[Close]
BLAST of ClCG06G013960 vs. NCBI nr
Match: GER36159.1 (methionine--tRNA ligase [Striga asiatica])

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-07
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 0 

Query: 69  WNPTAETKTSPPRNMRVVMMRSWKLEKTSISMTDMLETETAETEVKKMLRSFGEE-EFLV 128
           W+P+ E KTSPP N++ VM  +W+ EKTSIS  DMLET  AET+VK    S G +   L 
Sbjct: 52  WSPSMEVKTSPPTNIKTVMKINWESEKTSISTVDMLETVAAETDVKSKSMSRGAKFGDLG 111

Query: 129 LVSFRAPKPKR 139
              FR PKPK+
Sbjct: 112 FKDFRTPKPKK 122

[Close]
BLAST of ClCG06G013960 vs. NCBI nr
Match: EEF40241.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 62.0 bits (149), Expect = 6.5e-06
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 70  NPTAETKTSPPRNMRVVMMRSWKLEKTSISMTDMLETETAETEVKKMLRS--FGEEEFLV 129
           +P+ E KTSPP N++VV++ SW LEK SIS  DML+T  AETEVKKM  S    E+E +V
Sbjct: 187 SPSMEVKTSPPTNIKVVIIMSWVLEKASISTVDMLDTVVAETEVKKMSMSLILDEDEEVV 246

[Close]
BLAST of ClCG06G013960 vs. NCBI nr
Match: TKW06428.1 (hypothetical protein SEVIR_7G242050v2 [Setaria viridis])

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-04
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 70  NPTAETKTSPPRNMRVVMMRSWKLEKTSISMTDMLETETAETEVKKM 117
           +PT++  TSPP NM  VM+RSW LE TSIS  DML+T  A+T VK M
Sbjct: 34  SPTSDMNTSPPANMSAVMIRSWPLENTSISTADMLDTVAADTAVKNM 80

[Close]
BLAST of ClCG06G013960 vs. ExPASy TrEMBL
Match: A0A6J5TH56 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS1044 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.5e-08
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 0 

Query: 74  ETKTSPPRNMRVVMMRSWKLEKTSISMTDMLETETAETEVKKMLRSFGEEEFLVL--VSF 133
           E KTSPP N+++V M SW LEKTSIS  DMLET  AETEVK   +  G +E  VL   + 
Sbjct: 2   EVKTSPPMNIKMVKMMSWALEKTSISTVDMLETVEAETEVKNKSKFLGRKEGSVLDFKAL 61

Query: 134 RAPKPKRE 140
           R PKP++E
Sbjct: 62  RTPKPRKE 69

[Close]
BLAST of ClCG06G013960 vs. ExPASy TrEMBL
Match: A0A5A7PTK5 (Methionine--tRNA ligase OS=Striga asiatica OX=4170 GN=STAS_12482 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 0 

Query: 69  WNPTAETKTSPPRNMRVVMMRSWKLEKTSISMTDMLETETAETEVKKMLRSFGEE-EFLV 128
           W+P+ E KTSPP N++ VM  +W+ EKTSIS  DMLET  AET+VK    S G +   L 
Sbjct: 52  WSPSMEVKTSPPTNIKTVMKINWESEKTSISTVDMLETVAAETDVKSKSMSRGAKFGDLG 111

Query: 129 LVSFRAPKPKR 139
              FR PKPK+
Sbjct: 112 FKDFRTPKPKK 122

[Close]
BLAST of ClCG06G013960 vs. ExPASy TrEMBL
Match: B9S7S5 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1381490 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-06
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 70  NPTAETKTSPPRNMRVVMMRSWKLEKTSISMTDMLETETAETEVKKMLRS--FGEEEFLV 129
           +P+ E KTSPP N++VV++ SW LEK SIS  DML+T  AETEVKKM  S    E+E +V
Sbjct: 187 SPSMEVKTSPPTNIKVVIIMSWVLEKASISTVDMLDTVVAETEVKKMSMSLILDEDEEVV 246

[Close]
BLAST of ClCG06G013960 vs. ExPASy TrEMBL
Match: A0A4U6TTQ3 (Uncharacterized protein OS=Setaria viridis OX=4556 GN=SEVIR_7G242050v2 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 70  NPTAETKTSPPRNMRVVMMRSWKLEKTSISMTDMLETETAETEVKKM 117
           +PT++  TSPP NM  VM+RSW LE TSIS  DML+T  A+T VK M
Sbjct: 34  SPTSDMNTSPPANMSAVMIRSWPLENTSISTADMLDTVAADTAVKNM 80

[Close]
BLAST of ClCG06G013960 vs. ExPASy TrEMBL
Match: A0A2P2NP09 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.9e-04
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0 

Query: 74  ETKTSPPRNMRVVMMRSWKLEKTSISMTDMLETETAETEVKK 116
           ET TSPPRNMR V   SW+ EKTSIS  DML+T  A+T+VKK
Sbjct: 2   ETNTSPPRNMRKVKTMSWESEKTSISTVDMLDTVAADTDVKK 43

The following BLAST results are available for this feature:
BLAST of ClCG06G013960 vs. NCBI nr
Match NameE-valueIdentityDescription
CAB4262018.11.6e-0755.88unnamed protein product [Prunus armeniaca] >CAB4292601.1 unnamed protein product... [more]
GER36159.12.6e-0752.11methionine--tRNA ligase [Striga asiatica][more]
EEF40241.16.5e-0657.38conserved hypothetical protein [Ricinus communis][more]
TKW06428.12.7e-0459.57hypothetical protein SEVIR_7G242050v2 [Setaria viridis][more]
BLAST of ClCG06G013960 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG06G013960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J5TH567.5e-0855.88Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS1044 PE=4 SV... [more]
A0A5A7PTK51.3e-0752.11Methionine--tRNA ligase OS=Striga asiatica OX=4170 GN=STAS_12482 PE=4 SV=1[more]
B9S7S53.2e-0657.38Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1381490 PE=4 SV=1[more]
A0A4U6TTQ31.3e-0459.57Uncharacterized protein OS=Setaria viridis OX=4556 GN=SEVIR_7G242050v2 PE=4 SV=1[more]
A0A2P2NP093.9e-0466.67Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
BLAST of ClCG06G013960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G013960.1ClCG06G013960.1mRNA