ClCG06G013435 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G013435
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein
Location	CG_Chr06: 26784341 .. 26785045 (-)
RNA-Seq Expression	ClCG06G013435
Synteny	ClCG06G013435

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGACCGTGAACGAGATAGAGATAGAGTCCGCGACAGAGATAAAGATCGGGACCGTGATAGATACAAAGACCGGGAGCGTGACCATGACCACCGTGAACGTGACCGGCGTAGGGATCGAGAAGATCGCGACCACCGTGAACGTGACCGGGACCGTGAACGGCGTAGGGATCAAGAAGACCGTGACCGTGAAAGGGAGCGTGGCCGGAGTAAAAGGTCACACACTCCCGACCGCGCCAGATCCCGCCACACACGCTCTCGTACCCGCTCGCCGGACCGGCACCGTTCGCGGTCTCTTTCTCGTACTCCTGAGGACCGGTCCTCTCGCCGCCGCCATCGTTCGCCCTCCCCGGATCATGCTCGGAAGCGTCATCGACGGGATTTGACTGCGGACGATGAAAAGGAGCGGCAGAAAGCAGTTTCTGACTTCGTTGATGGCATTGCGAAGGAGCAGCACAAGCAGAAGAATAATAAAGATAGCGTTGGTGGCGGAGAAGTAGTGGAGGAGGCTATGGCTGATGAAGATGAAATTGAGATGATGAAGAAATTAGGCATTCCAGTGGGTTTCGATTCAACCAAGGGCAAACCTGTCCCAGGTGCTGATGTGAGTGGTGTTCGGGTAGTTACCAAGAGGCAACCTAGGCAGTACATGAATCGTCGTGGCGGGTTCAACCGGCCGTTGCCGGCCGAGCGGACCCGGTAG

mRNA sequence

ATGGTCGACCGTGAACGAGATAGAGATAGAGTCCGCGACAGAGATAAAGATCGGGACCGTGATAGATACAAAGACCGGGAGCGTGACCATGACCACCGTGAACGTGACCGGCGTAGGGATCGAGAAGATCGCGACCACCGTGAACGTGACCGGGACCGTGAACGGCGTAGGGATCAAGAAGACCGTGACCGTGAAAGGGAGCGTGGCCGGAGTAAAAGGTCACACACTCCCGACCGCGCCAGATCCCGCCACACACGCTCTCGTACCCGCTCGCCGGACCGGCACCGTTCGCGGTCTCTTTCTCGTACTCCTGAGGACCGGTCCTCTCGCCGCCGCCATCGTTCGCCCTCCCCGGATCATGCTCGGAAGCGTCATCGACGGGATTTGACTGCGGACGATGAAAAGGAGCGGCAGAAAGCAGTTTCTGACTTCGTTGATGGCATTGCGAAGGAGCAGCACAAGCAGAAGAATAATAAAGATAGCGTTGGTGGCGGAGAAGTAGTGGAGGAGGCTATGGCTGATGAAGATGAAATTGAGATGATGAAGAAATTAGGCATTCCAGTGGGTTTCGATTCAACCAAGGGCAAACCTGTCCCAGGTGCTGATGTGAGTGGTGTTCGGGTAGTTACCAAGAGGCAACCTAGGCAGTACATGAATCGTCGTGGCGGGTTCAACCGGCCGTTGCCGGCCGAGCGGACCCGGTAG

Coding sequence (CDS)

ATGGTCGACCGTGAACGAGATAGAGATAGAGTCCGCGACAGAGATAAAGATCGGGACCGTGATAGATACAAAGACCGGGAGCGTGACCATGACCACCGTGAACGTGACCGGCGTAGGGATCGAGAAGATCGCGACCACCGTGAACGTGACCGGGACCGTGAACGGCGTAGGGATCAAGAAGACCGTGACCGTGAAAGGGAGCGTGGCCGGAGTAAAAGGTCACACACTCCCGACCGCGCCAGATCCCGCCACACACGCTCTCGTACCCGCTCGCCGGACCGGCACCGTTCGCGGTCTCTTTCTCGTACTCCTGAGGACCGGTCCTCTCGCCGCCGCCATCGTTCGCCCTCCCCGGATCATGCTCGGAAGCGTCATCGACGGGATTTGACTGCGGACGATGAAAAGGAGCGGCAGAAAGCAGTTTCTGACTTCGTTGATGGCATTGCGAAGGAGCAGCACAAGCAGAAGAATAATAAAGATAGCGTTGGTGGCGGAGAAGTAGTGGAGGAGGCTATGGCTGATGAAGATGAAATTGAGATGATGAAGAAATTAGGCATTCCAGTGGGTTTCGATTCAACCAAGGGCAAACCTGTCCCAGGTGCTGATGTGAGTGGTGTTCGGGTAGTTACCAAGAGGCAACCTAGGCAGTACATGAATCGTCGTGGCGGGTTCAACCGGCCGTTGCCGGCCGAGCGGACCCGGTAG

Protein sequence

MVDRERDRDRVRDRDKDRDRDRYKDRERDHDHRERDRRRDREDRDHRERDRDRERRRDQEDRDRERERGRSKRSHTPDRARSRHTRSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDSVGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR

Homology

[Close]

BLAST of ClCG06G013435 vs. NCBI nr
Match: XP_008453595.1 (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo] >KAA0058267.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo var. makuwa] >TYK11820.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 378.6 bits (971), Expect = 3.8e-101
Identity = 224/234 (95.73%), Postives = 227/234 (97.01%), Query Frame = 0


Query: 1   MVDRERDRDRVRDRDKDRDRDRYKDRERDHDHRERDRRRDREDRDHRERDRDRERRRDQE 60
           MVDRERDRDR RDRDKDRDRDRYKDRERD DHRERDRRRDREDRDHRERDRDRERRRD +
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDLD 60

Query: 61  DRDRERERGRSKRSHTPDRARSRHTRSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120
           DRDRERERGRSKRSHTPDR+RSR  RSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSHTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDSVGGGEVVEEAMADEDEIEM 180
           ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKD+ G GEVVEEAMADEDEIEM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNAGSGEVVEEAMADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 232

[Close]

BLAST of ClCG06G013435 vs. NCBI nr
Match: XP_004146322.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis sativus] >KGN65465.1 hypothetical protein Csa_019811 [Cucumis sativus])

HSP 1 Score: 376.3 bits (965), Expect = 1.9e-100
Identity = 223/234 (95.30%), Postives = 228/234 (97.44%), Query Frame = 0


Query: 1   MVDRERDRDRVRDRDKDRDRDRYKDRERDHDHRERDRRRDREDRDHRERDRDRERRRDQE 60
           MVDRERDRDR RDRDKDRDRDRYKDRERD DHRERDRRRDREDRDHRERDRDRERRRDQ+
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60

Query: 61  DRDRERERGRSKRSHTPDRARSRHTRSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120
           DRDRERERGRSKRS TPDR+RSR  RSRTRSPDRHRSRSLSRTPEDR SRRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSLTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRPSRRRHRSPSPDH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDSVGGGEVVEEAMADEDEIEM 180
           ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKD+VGGGEVVEEAMADEDE+EM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 232

[Close]

BLAST of ClCG06G013435 vs. NCBI nr
Match: KAG6589703.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023383.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 356.3 bits (913), Expect = 2.0e-94
Identity = 212/234 (90.60%), Postives = 218/234 (93.16%), Query Frame = 0


Query: 1   MVDRERDRDRVRDRDKDRDRDRYKDRERDHDHRERDRRRDREDRDHRERDRDRERRRDQE 60
           MVDRERDRDR RDRDKDRDRDRY DRERD D+RERDRRRDRED     RDRDRERRR+++
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDRED-----RDRDRERRREKD 60

Query: 61  DRDRERERGRSKRSHTPDRARSRHTRSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120
           DRD ERERGR KRSHTP+R RSRHTRSRTRSPDRHRSRSLSRTPEDRS RRRHRSPSPDH
Sbjct: 61  DRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDSVGGGEVVEEAMADEDEIEM 180
            RKRHRRDLTADDEK+RQKAVSDFVDGIAKEQHKQKNNKDSVGGGE VEEAMADEDEIEM
Sbjct: 121 VRKRHRRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPV GADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 229

[Close]

BLAST of ClCG06G013435 vs. NCBI nr
Match: XP_023530476.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530477.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530478.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530479.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 349.7 bits (896), Expect = 1.9e-92
Identity = 206/234 (88.03%), Postives = 214/234 (91.45%), Query Frame = 0


Query: 1   MVDRERDRDRVRDRDKDRDRDRYKDRERDHDHRERDRRRDREDRDHRERDRDRERRRDQE 60
           MVDRERDRDR RDRDKDRDRDRYKDRERD DHRERD          R+RDR+RERRRD+E
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERD----------RDRDRERERRRDRE 60

Query: 61  DRDRERERGRSKRSHTPDRARSRHTRSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120
           DRDRERERGRSKRSHTPDR RSRHTRSRTRSPDRHR+RSLSR+PEDRS RRRHRSPSP+H
Sbjct: 61  DRDRERERGRSKRSHTPDRLRSRHTRSRTRSPDRHRTRSLSRSPEDRSLRRRHRSPSPEH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDSVGGGEVVEEAMADEDEIEM 180
           ARKRHRRDLT DD+KERQK VSDFVDGIAKEQHKQK NKD VGG EVVEEA+ADEDEIEM
Sbjct: 121 ARKRHRRDLTVDDDKERQKVVSDFVDGIAKEQHKQKKNKDGVGGEEVVEEAVADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPVPGADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

[Close]

BLAST of ClCG06G013435 vs. NCBI nr
Match: KAG6587747.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021718.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347.4 bits (890), Expect = 9.4e-92
Identity = 206/234 (88.03%), Postives = 214/234 (91.45%), Query Frame = 0


Query: 1   MVDRERDRDRVRDRDKDRDRDRYKDRERDHDHRERDRRRDREDRDHRERDRDRERRRDQE 60
           MVDRERDRDR RDRDKDRDRDRYKDRERD DHRERD          R+RDR+RERRRD+E
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERD----------RDRDRERERRRDRE 60

Query: 61  DRDRERERGRSKRSHTPDRARSRHTRSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120
           DRDRERERGRSKRSHTPDR RSRHTRSRTRS DRHR+RSLSR+PEDRS RRRHRSPSP+H
Sbjct: 61  DRDRERERGRSKRSHTPDRLRSRHTRSRTRSLDRHRTRSLSRSPEDRSLRRRHRSPSPEH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDSVGGGEVVEEAMADEDEIEM 180
           ARKRHRRDLT DD+KERQK VSDFVDGIAKEQHKQK NKDSVGG EVVEEA+ADEDEIEM
Sbjct: 121 ARKRHRRDLTVDDDKERQKVVSDFVDGIAKEQHKQKKNKDSVGGEEVVEEAVADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPVPGADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

[Close]

BLAST of ClCG06G013435 vs. ExPASy Swiss-Prot
Match: Q8K194 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus OX=10090 GN=Snrnp27 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.1e-09
Identity = 81/197 (41.12%), Postives = 99/197 (50.25%), Query Frame = 0


Query: 33  RERDRRRDREDRDHRERDRDRERRRDQEDRDRERERGRSKRSHTPDRARSRHTRSRTRSP 92
           R R R   RE R  R   RDRERRR +  R RER+R                 RSR+RSP
Sbjct: 3   RSRSRSPRRERRRSRSTSRDRERRRRERSRSRERDR----------------RRSRSRSP 62

Query: 93  DRHRSRSLSRTPEDRSSRRRHRSPSPDHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQ 152
            R RSR          S RRHRS SP  +R + RR    D+EK+  K +        K +
Sbjct: 63  HRRRSR----------SPRRHRSTSPSPSRLKERR----DEEKKETKEI--------KNK 122

Query: 153 HKQKNNKDSVGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVPGA-DVSGVRVVTK 212
            +Q   +D  G           E+EIEMMK +G    FDSTKGK V G+ +   + V  K
Sbjct: 123 ERQITEEDLEG---------KTEEEIEMMKLMGF-ASFDSTKGKKVDGSVNAYAINVSQK 151

Query: 213 RQPRQYMNRRGGFNRPL 229
           R+ RQYMNR+GGFNRPL
Sbjct: 183 RKYRQYMNRKGGFNRPL 151

[Close]

BLAST of ClCG06G013435 vs. ExPASy Swiss-Prot
Match: Q6DH74 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Danio rerio OX=7955 GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-08
Identity = 74/179 (41.34%), Postives = 91/179 (50.84%), Query Frame = 0


Query: 53  RERRRDQEDRDRERERGRSKRSHTPDRARSRHTRSRTRSPDRHRSRSLSRTPEDRSSR-- 112
           R R R    R+R R R  S+     DR R R  R R+RS DR R RS SR+P  R SR  
Sbjct: 3   RSRSRTPPRRERRRSRSSSR-----DRERRRRERERSRSRDRDRRRSRSRSPHRRRSRSP 62

Query: 113 RRHRSPSPDHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDSVGGGEVVEE 172
           RRHRS S    R++ RRD    D KE+   V      I+ E  + K              
Sbjct: 63  RRHRSSSLSPLRQKDRRDDDRKDVKEKPAKVHQ----ISAEDMQGKT------------- 122

Query: 173 AMADEDEIEMMKKLGIPVGFDSTKGKPVPGA-DVSGVRVVTKRQPRQYMNRRGGFNRPL 229
               E+EIEMMK +G    F+++KGK   G+     V V  KR+ RQYMNR+GGFNRPL
Sbjct: 123 ----EEEIEMMKLMGFG-SFETSKGKKKDGSIKAFAVNVSQKRKYRQYMNRKGGFNRPL 154

[Close]

BLAST of ClCG06G013435 vs. ExPASy Swiss-Prot
Match: Q8WVK2 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP27 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.1e-08
Identity = 80/197 (40.61%), Postives = 98/197 (49.75%), Query Frame = 0


Query: 33  RERDRRRDREDRDHRERDRDRERRRDQEDRDRERERGRSKRSHTPDRARSRHTRSRTRSP 92
           R R R   RE R  R   R+RERRR +  R RER+R                 RSR+RSP
Sbjct: 3   RSRSRSPRRERRRSRSTSRERERRRRERSRSRERDR----------------RRSRSRSP 62

Query: 93  DRHRSRSLSRTPEDRSSRRRHRSPSPDHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQ 152
            R RSR          S RRHRS SP  +R + RR    D+EK+  K          K +
Sbjct: 63  HRRRSR----------SPRRHRSTSPSPSRLKERR----DEEKKETKE--------TKSK 122

Query: 153 HKQKNNKDSVGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVPGA-DVSGVRVVTK 212
            +Q   +D  G           E+EIEMMK +G    FDSTKGK V G+ +   + V  K
Sbjct: 123 ERQITEEDLEG---------KTEEEIEMMKLMGF-ASFDSTKGKKVDGSVNAYAINVSQK 151

Query: 213 RQPRQYMNRRGGFNRPL 229
           R+ RQYMNR+GGFNRPL
Sbjct: 183 RKYRQYMNRKGGFNRPL 151

[Close]

BLAST of ClCG06G013435 vs. ExPASy Swiss-Prot
Match: Q6GLZ8 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus laevis OX=8355 GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-07
Identity = 79/199 (39.70%), Postives = 97/199 (48.74%), Query Frame = 0


Query: 37  RRRDREDRDHRERDRDRERRRDQEDRDRERERGRSKRSHTPDRARSRHTRSRTRSPDRHR 96
           R R R     RER R R   R++E R RER R R +R            RSR+RSP R R
Sbjct: 3   RSRSRSPERRRERRRSRSASRERERRRRERSRSRERR------------RSRSRSPHRRR 62

Query: 97  SRSLSRTPEDRSSRRRHRSPSPDHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQK 156
           SR          S RRHRS S   +R + RRD   DD+KE                    
Sbjct: 63  SR----------SPRRHRSSSISPSRLKDRRD---DDKKE-------------------- 122

Query: 157 NNKDSVGGGEVVEEAMAD------EDEIEMMKKLGIPVGFDSTKGKPVPGA-DVSGVRVV 216
             K+S GGG    +  A+      E+EIEMMK +G    FDS+KGK   G+ +   + V 
Sbjct: 123 -PKESKGGGSKERQLAAEDLEGKTEEEIEMMKLMGF-ASFDSSKGKKTDGSVNAYAINVS 154

Query: 217 TKRQPRQYMNRRGGFNRPL 229
            KR+ RQYMNR+GGFNRPL
Sbjct: 183 QKRKYRQYMNRKGGFNRPL 154

[Close]

BLAST of ClCG06G013435 vs. ExPASy Swiss-Prot
Match: Q6DDA4 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus tropicalis OX=8364 GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 76/193 (39.38%), Postives = 96/193 (49.74%), Query Frame = 0


Query: 37  RRRDREDRDHRERDRDRERRRDQEDRDRERERGRSKRSHTPDRARSRHTRSRTRSPDRHR 96
           R R R     RER R R   R++E R RER R R +R            RSR+RSP R R
Sbjct: 3   RSRSRSPERRRERRRSRSASRERERRRRERSRSRERR------------RSRSRSPHRRR 62

Query: 97  SRSLSRTPEDRSSRRRHRSPSPDHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQK 156
           SR          S RRHRS S    R + RRD   DD+K+ +++       IA E  + K
Sbjct: 63  SR----------SPRRHRSSSISPGRLKDRRD---DDKKDSKESKGAKERQIAAEDLEGK 122

Query: 157 NNKDSVGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVPGA-DVSGVRVVTKRQPR 216
                             E+EIEMMK +G    FD++KGK V G+ +   + V  KR+ R
Sbjct: 123 T-----------------EEEIEMMKMMGFAT-FDTSKGKKVDGSVNAYAINVSQKRKYR 152

Query: 217 QYMNRRGGFNRPL 229
           QYMNR+GGFNRPL
Sbjct: 183 QYMNRKGGFNRPL 152

[Close]

BLAST of ClCG06G013435 vs. ExPASy TrEMBL
Match: A0A5D3CK71 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00330 PE=3 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.8e-101
Identity = 224/234 (95.73%), Postives = 227/234 (97.01%), Query Frame = 0


Query: 1   MVDRERDRDRVRDRDKDRDRDRYKDRERDHDHRERDRRRDREDRDHRERDRDRERRRDQE 60
           MVDRERDRDR RDRDKDRDRDRYKDRERD DHRERDRRRDREDRDHRERDRDRERRRD +
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDLD 60

Query: 61  DRDRERERGRSKRSHTPDRARSRHTRSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120
           DRDRERERGRSKRSHTPDR+RSR  RSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSHTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDSVGGGEVVEEAMADEDEIEM 180
           ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKD+ G GEVVEEAMADEDEIEM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNAGSGEVVEEAMADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 232

[Close]

BLAST of ClCG06G013435 vs. ExPASy TrEMBL
Match: A0A1S3BW27 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo OX=3656 GN=LOC103494258 PE=3 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.8e-101
Identity = 224/234 (95.73%), Postives = 227/234 (97.01%), Query Frame = 0


Query: 1   MVDRERDRDRVRDRDKDRDRDRYKDRERDHDHRERDRRRDREDRDHRERDRDRERRRDQE 60
           MVDRERDRDR RDRDKDRDRDRYKDRERD DHRERDRRRDREDRDHRERDRDRERRRD +
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDLD 60

Query: 61  DRDRERERGRSKRSHTPDRARSRHTRSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120
           DRDRERERGRSKRSHTPDR+RSR  RSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSHTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDSVGGGEVVEEAMADEDEIEM 180
           ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKD+ G GEVVEEAMADEDEIEM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNAGSGEVVEEAMADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 232

[Close]

BLAST of ClCG06G013435 vs. ExPASy TrEMBL
Match: A0A0A0LU61 (SNRNP27 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G423230 PE=3 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 9.1e-101
Identity = 223/234 (95.30%), Postives = 228/234 (97.44%), Query Frame = 0


Query: 1   MVDRERDRDRVRDRDKDRDRDRYKDRERDHDHRERDRRRDREDRDHRERDRDRERRRDQE 60
           MVDRERDRDR RDRDKDRDRDRYKDRERD DHRERDRRRDREDRDHRERDRDRERRRDQ+
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60

Query: 61  DRDRERERGRSKRSHTPDRARSRHTRSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120
           DRDRERERGRSKRS TPDR+RSR  RSRTRSPDRHRSRSLSRTPEDR SRRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSLTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRPSRRRHRSPSPDH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDSVGGGEVVEEAMADEDEIEM 180
           ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKD+VGGGEVVEEAMADEDE+EM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 232

[Close]

BLAST of ClCG06G013435 vs. ExPASy TrEMBL
Match: A0A6J1L1Y6 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita maxima OX=3661 GN=LOC111499666 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 7.7e-92
Identity = 204/234 (87.18%), Postives = 214/234 (91.45%), Query Frame = 0


Query: 1   MVDRERDRDRVRDRDKDRDRDRYKDRERDHDHRERDRRRDREDRDHRERDRDRERRRDQE 60
           MVDRERDRDR RDRDKDRDRDRYKDRERD DHRERD          R+RDR+RERRRD++
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERD----------RDRDRERERRRDRD 60

Query: 61  DRDRERERGRSKRSHTPDRARSRHTRSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120
           DRDRERERGRSKRSHTPDR RSRHTRSRTRSPD+HR+RSLSR+PEDRS RRRHRSPSP+H
Sbjct: 61  DRDRERERGRSKRSHTPDRLRSRHTRSRTRSPDQHRTRSLSRSPEDRSLRRRHRSPSPEH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDSVGGGEVVEEAMADEDEIEM 180
           ARKRHRRDLT DD+KERQK VSDFVDGIAKEQHKQK NKD VGG EVVEEA+ADEDEIEM
Sbjct: 121 ARKRHRRDLTVDDDKERQKVVSDFVDGIAKEQHKQKKNKDRVGGEEVVEEAVADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPVPGADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

[Close]

BLAST of ClCG06G013435 vs. ExPASy TrEMBL
Match: A0A6J1EW85 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111436672 PE=3 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.3e-91
Identity = 205/234 (87.61%), Postives = 212/234 (90.60%), Query Frame = 0


Query: 1   MVDRERDRDRVRDRDKDRDRDRYKDRERDHDHRERDRRRDREDRDHRERDRDRERRRDQE 60
           MVDRERDRDR RDRDKDRDRDRYKDRERD DHRERD            RDR+RERRRD+E
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERD------------RDRERERRRDRE 60

Query: 61  DRDRERERGRSKRSHTPDRARSRHTRSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120
           DRDRERERGRSKRSHTPDR RSRHTRSRTRS DRHR+RSLSR+PEDRS RRRHRSPSP+H
Sbjct: 61  DRDRERERGRSKRSHTPDRLRSRHTRSRTRSLDRHRTRSLSRSPEDRSLRRRHRSPSPEH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDSVGGGEVVEEAMADEDEIEM 180
           ARKRHRRDLT DD+KERQK VSDFVDGIAKEQHKQK NKDSVGG EVVEEA+ADEDEIEM
Sbjct: 121 ARKRHRRDLTVDDDKERQKVVSDFVDGIAKEQHKQKKNKDSVGGEEVVEEAVADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPVPGADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 222

[Close]

BLAST of ClCG06G013435 vs. TAIR 10
Match: AT5G57370.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777 (InterPro:IPR013957); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-37
Identity = 133/235 (56.60%), Postives = 159/235 (67.66%), Query Frame = 0


Query: 13  DRDKDRDRDRYKDRERDHDHRERDRRRDREDRDHRERDRDRERRRDQEDRDRERERG--- 72
           +RD+ R+R+R KDRE D     RDRRR R+DRD R+RDRDRER     DR+R+R+RG   
Sbjct: 3   ERDR-RERERDKDREPD-----RDRRRGRDDRD-RDRDRDRER-----DRERDRDRGLRN 62

Query: 73  RSKRSHTPD-RARSRHTRSRTRSPDRHRSRSLS---RTPEDRSSRRRHRSPSPDHARKRH 132
           +  RS TPD  AR+RH     RSP+R+RSRS S       DR    R RSPSPD   ++ 
Sbjct: 63  KKSRSRTPDHHARARH----VRSPERYRSRSRSIDRDRDRDRQRHHRRRSPSPDAPSRKR 122

Query: 133 RRDLTADDEKE--RQKAVSDFVD----GIAKEQHKQKNNKDSVGGGEVVEEAMADEDEIE 192
            R  + DDEKE  R++ V+D VD     I K++ KQ ++    GGGE  +E   D +EIE
Sbjct: 123 PRQGSVDDEKERNRKRVVTDSVDENASTITKKKDKQPSDAADNGGGE--DEEGMDVNEIE 182

Query: 193 MMKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MMK LGIP GFDSTKGKPV GADVSG+R VTKRQPRQYMNRRGGFNRPLPAER R
Sbjct: 183 MMKMLGIPTGFDSTKGKPVAGADVSGIRAVTKRQPRQYMNRRGGFNRPLPAERNR 219

The following BLAST results are available for this feature:

BLAST of ClCG06G013435 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453595.1	3.8e-101	95.73	PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo...	[more]
XP_004146322.1	1.9e-100	95.30	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis sativus] >KGN65...	[more]
KAG6589703.1	2.0e-94	90.60	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argy...	[more]
XP_023530476.1	1.9e-92	88.03	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo sub...	[more]
KAG6587747.1	9.4e-92	88.03	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argy...	[more]

BLAST of ClCG06G013435 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K194	6.1e-09	41.12	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus OX=10090...	[more]
Q6DH74	1.8e-08	41.34	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Danio rerio OX=7955 G...	[more]
Q8WVK2	5.1e-08	40.61	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens OX=9606 ...	[more]
Q6GLZ8	1.5e-07	39.70	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus laevis OX=835...	[more]
Q6DDA4	1.6e-06	39.38	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus tropicalis OX...	[more]

BLAST of ClCG06G013435 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CK71	1.8e-101	95.73	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo var. mak...	[more]
A0A1S3BW27	1.8e-101	95.73	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo OX=3656 ...	[more]
A0A0A0LU61	9.1e-101	95.30	SNRNP27 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G423230 PE=...	[more]
A0A6J1L1Y6	7.7e-92	87.18	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita maxima...	[more]
A0A6J1EW85	1.3e-91	87.61	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita moscha...	[more]

BLAST of ClCG06G013435 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57370.1	1.4e-37	56.60	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013957	U4/U6.U5 small nuclear ribonucleoprotein 27kDa protein	PFAM	PF08648	SNRNP27	coord: 175..230 e-value: 1.0E-24 score: 86.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
None	No IPR available	PANTHER	PTHR31077	U4/U6.U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 27 KDA PROTEIN	coord: 34..234
None	No IPR available	PANTHER	PTHR31077:SF4	BNAA10G11430D PROTEIN	coord: 34..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G013435.1	ClCG06G013435.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0005634	nucleus