ClCG06G013040 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG06G013040
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionSmall nuclear ribonucleoprotein E
LocationCG_Chr06: 26302370 .. 26307535 (+)
RNA-Seq ExpressionClCG06G013040
SyntenyClCG06G013040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGTCGCCACGCCCGTCGTTCAAAGTTGCCTTGTCGTGCCGCCCAAAGCCTCGCCTCAACGCGCCGCCACCTCGCTGTCGTCGTCCAAAGTCGCCTCGCCGCCGTCCGTCCAAGTCCACCTGTGACGCGAGAGAGAAGATGGGTGCGATGGCTTCTAGGGGACTTTTTTACTAAGGGCAATTTAGATATTTCACCTATCCATTTATCCTAAACCAAAACTCTTTCACCCCCAAAATTTTATCCTCTTCTTGACAATTTCCCAAGGGGTTTAGGGTTTCGTTTCTTATCGCCTGAAGATCCTCTCACCCTCAGTACAATTTCGATAGCCATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCGATTGTAAGCTCAGATTCTATTCATTTTTCTTACTTTCTGATTGGGGCTACCTTTATCTATTTCTGCGCTTCACTTCTAATTTCCGTATCTTTCACTTTTTGTTTTTACTTGATCCCGTTGTTGCTGCTTCTTTGGAACTAGAACTTGATATTCAGGTTTCTTCAAAGTGTAAGAACTTAATCTTCCAAATTTGGTTACTTATCTCTAGCTTTTTTGGTCTACTTTCGCTTTTCTAATTCGAGTTAGTTTGAAACCACTGCAGAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAAGACCTTAGGATCGAAGGCCGAATTATTGTAAGATTTTTATTTATTGCTGGTTTGCCCTTTTTTCCTTGTTTTTGCTATTAATGTAACAGGGATTGATGCCTATATTTTGATTTTAGTTAAATGTATTAATTACATTCTAGCTTTCTTGTTGGCATATGCTTATGATTGACATATGCTTCTTCATAGTTGGATGGATGCAATTTACTCTAACATACGCTTGCTTCTTATAGGGAATTCTGTTTTTTTAGTGGAGTAAAAAGGACACCAATGTGTTTTAAAATTCTTCGATGTCCTTGCTAAGGGCCTCAAACTGCTACTCCAATCGCATAATGAATTTCTGTAAAATTTATTGAGTTGGAAAACTTGCGTTGTATAGGTAGTTTATCAGTTACAACTTACAAGTTGAATTTGAATCTACTTGAAATGGATGTTACAAAATAAATTAGCATGCCTTCAAGATTGTGTTTTAATATTTTGATTTTTTTTTTTAAACGGAAACAAGACTATCCATTGATATAATGATGAGTCTAAAGCTCGAAGTATAGGAGACGAAACTAAATAAAAACTTCAAACTTGCCAATACAAGGCTAGAACCAAATTATATCATAAAGACTAAACTCTGAAGAAAAATTAAAAATCTCCACTCTGCCACTTTGCCTCAACACCAAAACTCAATGTTGATTGAGAAAACGTGGATGAACAAACAACTTTTTTAGGGTAAGGAACAGTTTCATAGATTGTATAGAAATTTGAACAGGAAGGAAAACCAAGCCCAAGCCCAAGGGAAATATTCACTCAACGTTGAAAGTCCTAGCAGTGGGTCTAATGAATTAAAAGATAAGCAGGATGCTGAGAACACATCACCATCTATGCTGCACAGTATTACACCCTAATTAGCTCATTGAACTACATAATGAGACATAATGGAAGAAAGTGATCTACACAGGGTATGCTACATTACTAGCAGTAGAACCACCCACAATGTTTAAAAAAGTGCATCCTGGACTCTAGGGCAACTTTTTACTTGCTTAGAAATTAGAAGTAATAGATGCAAAAAAGCAACTAAGTATTAAATTGCAATAACTTGTAACATGAAGTAGATGAAAAGGACATGAAATATGCTAGCACATACAGTTAAATATCCAAAGTTAAGAGACTAAAGAGTTGATTCACTCAGTTCGCATGAGGAATAATGAACCCAAATATGCTGTCAGAATTCTGAAAACAACATTCAATCGCTCATAGGAAAAATTTTCTACTGAACTGGTCACAATATTTCAAAGATTGATAAGAGAATTTTGCCATAAAACAAACAGGAATATTGAGTACAGAAAAACAGCATACAATCTTATGTGGAAGAATAAACTAACTTCAAGGAGGTATAGACAGATGGAAATGAATCTGAAGGCGAGGGGGATATCTCTTAAAGAACGTACATTTCAAGATGTGCTCCAACAACAGAAGAAAAGTAATTGACCATTGCCCTTGGCATTATTTGAGGCTTCATGGAAACAAACTTTAGTTTCAGTGATCCCAATGGTCAGTTGAATTGAACTAAATACTGAAAAACAACTCTAACCATGGAAAATTTTCCATTAGAGACTCAATCTATCTTAAACTGGGACCCAACTAATATTCACTAGCTACAGAAAGGAATGAGAAATTAACTGTATTTAGTAGCGTATTTCATGTCCTTTTATCTACTTTATGTTACAAGTTATTGCGATTTAATACTTAGTTGCTTTTTTGCATCTATTATGTCTAATTTCTAAGCAAGTAAAAAGCTGTAGCCATAGAGTCCATGATGCACTTTTCTAAACACTGTGGTTGGTTCTACTGCTAGTAATGTGGCACCTGTATAGATCACGTTCTTCCATTATATCTCATTATGTAGTTCAATGAGCTAATTAGGGTGTAAATAGTATGCAGAATAGATTGTGATGTGTTCTCAGCATCCTGCTTATCTTTTAATTCATTAGACCCACTGCTAGGACTACAATTTTCATCGTTGCGTGAATATTTCCCTTGGGCTTGGGCTTGGGCTTGGTTTTCCTTCCTGTTCAAATTTTTATACAATCTATGAAACTGTTCCTTACCCTAAAAAAGTTGTTTGGTCGTCTACTTTTCCCAATAATCTAATAACATGTATGTAGTTTTTTCAACTATTAGCTATGCCTAAGATTCTGTAAATACATGCAGGAATGTGTTTATGGCATTATCTTGTACTTGAAAATTTGATTTTCTTGTTTTATTGTTTGTTGTAAACTTGTAATTACCTATGTTTTGGCTGACTAATTAATGATGTTATAACTTATAAGGGAGGTAGTTAGAGGAAGCTGTTCCTTTTTTGTCATTAAATTGATTATATTTTCTTGTCGTATAGGGATTTGATGAGTATATGAATTTAGTGCTTGATGATGCTGAGGAAGTTCATGTTAAGAAAAAGAGTAAAAAGGCACTTGGTATGGCCTTCTTTCCCCCTCGTTTGCTGTTGCTTTTTCTATACTTCAATGACAATGTTATCTGAAATGCCTTTTTTTGGTCCCTTCAGGGAGGATTCTTCTCAAGGGAGACAATATTACATTAATGATGAACACGTAAGTGACATTGAACTTGCCTTTCCTCTCCATTTCCCTTACACCAACTAACTTTCTTTTACTTTCTTTTTTTTAGGGGAAAATGATGATCATCCAGCAGAACACATTATTGAGATTAAGTTTTCACAATCATTGTATGGCGCTATAGCTTTTACAATTACCTTCTGTTTGGAGTTGTATCTTTCAACGTTTTAAGCCATCAATGATTAACCAGTTCTTGGATGTATAATGTTATATTGCTGTTGGTAGGTAGTATCCTGGCGCCATAGCTTTTACAATTACCTTCTGTTGGGAGGTTGTATCTTTTAATGTTTTAAGCCATCGCTGATTAACTAGTTCTTTGGTTGTGTAATGTTATATTGCTGTTGGTAGGTTATACTTGTATGTGAACTCCTTTTAGTTTATCGTCCTTATAATTGGTTGTTTACACCGACCAATCCTTGAAACTATGGAATTTGGGTTCCTTGAATCATAAACTAGAAATGGTGGAGCATCCTTTGAGAACGTCTGGTTAATTTTGAGAGGGATAGGCGTTTCCCTGAATTCTGATTGTCTTCATCCTCAGAGAAAAAAGATTCACCCTCCTTATCCTGTACAAGATTGATTACCAAGTGCTGTGACGATGCATTCTAACTCTCACTTTTTAGAGGATTTGGTTACAATTTTTTAAGAAAAACTTACATTCAGACATCTTTGCTTAAGGCAACTGTTTTGGGTATGTAATCCTTAGACTTATTGGCCCAAGCTCCCTAGCAGTAGTATGAGTATTCAAGTTCAAGCTACTGTCCACGATAAAAACCCACTTAACAACAGGCCCATTGGCAGTGTTGGGTGTGGTCTGTGGGGTACTAGATTATTCCCTTTTTGATCATGTATTTATATATGAGCAATGAATCTAATACAGTGCTGGTTCCGCTTTTGTCGTTTTTACATGATGTAGGCAATCATGAAGTGAGAAAGGGGAACTGAAGCAGATAAAAGGCAGACATCCATTAGTAGACAGTTGGTGATAGAAGGCACATCTGAGCACCAGGGTGTGGGAAGAAAGATTGGACTACGAAGCAAAAGAGAATTTTGGAGATAACCCAAGTGAAGGTGGTGGTGGCCGGTGGGACACATACATGGGGTCAGGGAATCACACCCCTCTAGGCCAGTTAACTATTATCTTCTGCTTGCAACTGGGAGTATGAGAAAAGGCATGTGTGCCCTTGAGTTGGAAAACGAGTGCGCCATCGCATTTGTTCTTCTTTTGCATTTATTGGTGACTGACTCATCTTCCACACAATATCATTTCTCTTCCTCTCTCCTTGGTGCAATACGCCACTCCCATTCCATTTGGTGCTTTCTTTGACACATTCCATAACTCCTGATTTCCCTCTCTCATCATTGGAGAAATGCATGATTGTTTGACAGTGCTTGACACACCATGAAAACATCACTATTATTTTGTTTTCTTATCAAACTATCCATCTCTTGTTATTAAATTTGGTTATTCAAATTTCTTTATTTTGGGTTTAACCTAAGCTTCGTTTTCTTCTTATCCTATCTGGCCATTGTTGTATGAAGTTATGTTGCAATTTCGAGATAGGAAATTGTTGATGATAGATTGAATAATATGATTCTGTCACTCCCGATTCTTTGGGAATGCCTGGCTGTTGCTGACACCTTCGCCCATGTGAGTTTTGGTTATACTTTCATCAGAATGGGGTCTCAAATAGTACACTAGCAGCTAGAAAAGATAAATGCCCCTTGAAACTTTTTGAAGACATAGCCTTGTCGTGATGGAACAATACGAGCTGAGGGATATATTGATAGTGAAATTTCAGGAAACACAAAGGCCCCTCACAAAAACAATCTACAGTGCACATTCTATTCACACTTGGAGGAGTCTGATGCTTAG

mRNA sequence

ATGGTAGTCGCCACGCCCGTCGTTCAAAGTTGCCTTGTCGTGCCGCCCAAAGCCTCGCCTCAACGCGCCGCCACCTCGCTGTCGTCGTCCAAAGTCGCCTCGCCGCCGTCCGTCCAAGTCCACCTGGGTTTAGGGTTTCGTTTCTTATCGCCTGAAGATCCTCTCACCCTCAGTACAATTTCGATAGCCATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCGATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAAGACCTTAGGATCGAAGGCCGAATTATTGGATTTGATGAGTATATGAATTTAGTGCTTGATGATGCTGAGGAAGTTCATGTTAAGAAAAAGAGTAAAAAGGCACTTGGGAGGATTCTTCTCAAGGGAGACAATATTACATTAATGATGAACACGGTGTGGGAAGAAAGATTGGACTACGAAGCAAAAGAGAATTTTGGAGATAACCCAAGTGAAGGTGGTGGTGGCCGGTGGGACACATACATGGGGTCAGGGAATCACACCCCTCTAGGCCAGTTAACTATTATCTTCTGCTTGCAACTGGGAGAAATTGTTGATGATAGATTGAATAATATGATTCTGTCACTCCCGATTCTTTGGGAATGCCTGGCTGTTGCTGACACCTTCGCCCATCCTTGTCGTGATGGAACAATACGAGCTGAGGGATATATTGATAGTGAAATTTCAGGAAACACAAAGGCCCCTCACAAAAACAATCTACAGTGCACATTCTATTCACACTTGGAGGAGTCTGATGCTTAG

Coding sequence (CDS)

ATGGTAGTCGCCACGCCCGTCGTTCAAAGTTGCCTTGTCGTGCCGCCCAAAGCCTCGCCTCAACGCGCCGCCACCTCGCTGTCGTCGTCCAAAGTCGCCTCGCCGCCGTCCGTCCAAGTCCACCTGGGTTTAGGGTTTCGTTTCTTATCGCCTGAAGATCCTCTCACCCTCAGTACAATTTCGATAGCCATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCGATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAAGACCTTAGGATCGAAGGCCGAATTATTGGATTTGATGAGTATATGAATTTAGTGCTTGATGATGCTGAGGAAGTTCATGTTAAGAAAAAGAGTAAAAAGGCACTTGGGAGGATTCTTCTCAAGGGAGACAATATTACATTAATGATGAACACGGTGTGGGAAGAAAGATTGGACTACGAAGCAAAAGAGAATTTTGGAGATAACCCAAGTGAAGGTGGTGGTGGCCGGTGGGACACATACATGGGGTCAGGGAATCACACCCCTCTAGGCCAGTTAACTATTATCTTCTGCTTGCAACTGGGAGAAATTGTTGATGATAGATTGAATAATATGATTCTGTCACTCCCGATTCTTTGGGAATGCCTGGCTGTTGCTGACACCTTCGCCCATCCTTGTCGTGATGGAACAATACGAGCTGAGGGATATATTGATAGTGAAATTTCAGGAAACACAAAGGCCCCTCACAAAAACAATCTACAGTGCACATTCTATTCACACTTGGAGGAGTCTGATGCTTAG

Protein sequence

MVVATPVVQSCLVVPPKASPQRAATSLSSSKVASPPSVQVHLGLGFRFLSPEDPLTLSTISIAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNTVWEERLDYEAKENFGDNPSEGGGGRWDTYMGSGNHTPLGQLTIIFCLQLGEIVDDRLNNMILSLPILWECLAVADTFAHPCRDGTIRAEGYIDSEISGNTKAPHKNNLQCTFYSHLEESDA
Homology
[Close]
BLAST of ClCG06G013040 vs. NCBI nr
Match: XP_038880616.1 (small nuclear ribonucleoprotein E-like isoform X1 [Benincasa hispida])

HSP 1 Score: 196.8 bits (499), Expect = 2.4e-46
Identity = 102/107 (95.33%), Postives = 103/107 (96.26%), Query Frame = 0 

Query: 43  GLGFRFLSPEDPLTLSTISIAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRI 102
           GLGFRFLSPED L L  ISIAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRI
Sbjct: 19  GLGFRFLSPEDHLILGRISIAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRI 78

Query: 103 EGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT 150
           EGRIIGFDEYMNLVLDDAEEV+VKKKSKKALGRILLKGDNITLMMNT
Sbjct: 79  EGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNT 125

[Close]
BLAST of ClCG06G013040 vs. NCBI nr
Match: XP_038880617.1 (small nuclear ribonucleoprotein E-like isoform X2 [Benincasa hispida])

HSP 1 Score: 196.8 bits (499), Expect = 2.4e-46
Identity = 102/107 (95.33%), Postives = 103/107 (96.26%), Query Frame = 0 

Query: 43  GLGFRFLSPEDPLTLSTISIAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRI 102
           GLGFRFLSPED L L  ISIAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRI
Sbjct: 19  GLGFRFLSPEDHLILGRISIAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRI 78

Query: 103 EGRIIGFDEYMNLVLDDAEEVHVKKKSKKALGRILLKGDNITLMMNT 150
           EGRIIGFDEYMNLVLDDAEEV+VKKKSKKALGRILLKGDNITLMMNT
Sbjct: 79  EGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNT 125

[Close]
BLAST of ClCG06G013040 vs. NCBI nr
Match: KAE8653153.1 (hypothetical protein Csa_019571 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 4.0e-46
Identity = 111/162 (68.52%), Postives = 118/162 (72.84%), Query Frame = 0 

Query: 64  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 123
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 124 HVKKKSKKALGRILLKGDNITLMMNT---------------------------VWEERLD 183
           +VKKKSKKALGRILLKGDNITLMMN+                           VWEERLD
Sbjct: 61  NVKKKSKKALGRILLKGDNITLMMNSCKGEGEADKRQTSISRLLVIKGNLSTRVWEERLD 120

Query: 184 YEAKENFGDNPSEGGGGRWDTYMGSGNHTPLGQLTIIFCLQL 199
           YE  +   +     GG    T+MGSGNH  L +LTI+FCLQL
Sbjct: 121 YERSQ---EKVVVAGG----THMGSGNHALLARLTIVFCLQL 155

[Close]
BLAST of ClCG06G013040 vs. NCBI nr
Match: XP_022921760.1 (small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita moschata] >XP_022988524.1 small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita maxima] >XP_023516210.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >KAG6589730.1 Small nuclear ribonucleoprotein E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.4 bits (420), Expect = 3.4e-37
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 64  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 123
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 124 HVKKKSKKALGRILLKGDNITLMMNT 150
           +VKKKSKKALGRILLKGDNITLMMNT
Sbjct: 61  NVKKKSKKALGRILLKGDNITLMMNT 86

[Close]
BLAST of ClCG06G013040 vs. NCBI nr
Match: OIS97104.1 (hypothetical protein A4A49_04200 [Nicotiana attenuata])

HSP 1 Score: 165.6 bits (418), Expect = 5.8e-37
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 62  IAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAE 121
           +AMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAE
Sbjct: 181 LAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAE 240

Query: 122 EVHVKKKSKKALGRILLKGDNITLMMNT 150
           EV+VKKKS+K LGRILLKGDNITLMMNT
Sbjct: 241 EVNVKKKSRKQLGRILLKGDNITLMMNT 268

[Close]
BLAST of ClCG06G013040 vs. ExPASy Swiss-Prot
Match: A4FUI2 (Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 68  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKK 127
           KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K 
Sbjct: 9   KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 128 KSKKALGRILLKGDNITLMMN 149
           KS+K LGRI+LKGDNITL+ +
Sbjct: 69  KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of ClCG06G013040 vs. ExPASy Swiss-Prot
Match: P62303 (Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 68  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKK 127
           KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K 
Sbjct: 9   KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 128 KSKKALGRILLKGDNITLMMN 149
           KS+K LGRI+LKGDNITL+ +
Sbjct: 69  KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of ClCG06G013040 vs. ExPASy Swiss-Prot
Match: P62304 (Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 68  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKK 127
           KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K 
Sbjct: 9   KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 128 KSKKALGRILLKGDNITLMMN 149
           KS+K LGRI+LKGDNITL+ +
Sbjct: 69  KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of ClCG06G013040 vs. ExPASy Swiss-Prot
Match: P62305 (Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 68  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKK 127
           KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K 
Sbjct: 9   KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 128 KSKKALGRILLKGDNITLMMN 149
           KS+K LGRI+LKGDNITL+ +
Sbjct: 69  KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of ClCG06G013040 vs. ExPASy Swiss-Prot
Match: A1XQR9 (Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 68  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKK 127
           KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K 
Sbjct: 9   KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 128 KSKKALGRILLKGDNITLMMN 149
           KS+K LGRI+LKGDNITL+ +
Sbjct: 69  KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of ClCG06G013040 vs. ExPASy TrEMBL
Match: A0A6J1JLU4 (Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111485738 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-37
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 64  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 123
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 124 HVKKKSKKALGRILLKGDNITLMMNT 150
           +VKKKSKKALGRILLKGDNITLMMNT
Sbjct: 61  NVKKKSKKALGRILLKGDNITLMMNT 86

[Close]
BLAST of ClCG06G013040 vs. ExPASy TrEMBL
Match: A0A6J1E6Q3 (Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111429915 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-37
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 64  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 123
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 124 HVKKKSKKALGRILLKGDNITLMMNT 150
           +VKKKSKKALGRILLKGDNITLMMNT
Sbjct: 61  NVKKKSKKALGRILLKGDNITLMMNT 86

[Close]
BLAST of ClCG06G013040 vs. ExPASy TrEMBL
Match: A0A1J6IPM5 (Sm protein E OS=Nicotiana attenuata OX=49451 GN=A4A49_04200 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.8e-37
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 62  IAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAE 121
           +AMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAE
Sbjct: 181 LAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAE 240

Query: 122 EVHVKKKSKKALGRILLKGDNITLMMNT 150
           EV+VKKKS+K LGRILLKGDNITLMMNT
Sbjct: 241 EVNVKKKSRKQLGRILLKGDNITLMMNT 268

[Close]
BLAST of ClCG06G013040 vs. ExPASy TrEMBL
Match: A0A6J1ICX7 (Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111471407 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.7e-37
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 64  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 123
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 124 HVKKKSKKALGRILLKGDNITLMMNT 150
           +VKKKSKK+LGRILLKGDNITLMMNT
Sbjct: 61  NVKKKSKKSLGRILLKGDNITLMMNT 86

[Close]
BLAST of ClCG06G013040 vs. ExPASy TrEMBL
Match: A0A6J1F0M2 (Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111438400 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.7e-37
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 64  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 123
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 124 HVKKKSKKALGRILLKGDNITLMMNT 150
           +VKKKSKK+LGRILLKGDNITLMMNT
Sbjct: 61  NVKKKSKKSLGRILLKGDNITLMMNT 86

[Close]
BLAST of ClCG06G013040 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 155.6 bits (392), Expect = 5.6e-38
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 0 

Query: 64  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 123
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 124 HVKKKSKKALGRILLKGDNITLMMNT 150
            +KK ++K LGRILLKGDNITLMMNT
Sbjct: 61  SIKKNTRKPLGRILLKGDNITLMMNT 86

[Close]
BLAST of ClCG06G013040 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 155.6 bits (392), Expect = 5.6e-38
Identity = 78/85 (91.76%), Postives = 82/85 (96.47%), Query Frame = 0 

Query: 64  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 123
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 124 HVKKKSKKALGRILLKGDNITLMMN 149
            +KKK++K LGRILLKGDNITLMMN
Sbjct: 61  SIKKKTRKPLGRILLKGDNITLMMN 85

[Close]
BLAST of ClCG06G013040 vs. TAIR 10
Match: AT2G18740.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-29
Identity = 63/71 (88.73%), Postives = 67/71 (94.37%), Query Frame = 0 

Query: 64  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 123
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 124 HVKKKSKKALG 135
            +KK ++K LG
Sbjct: 61  SIKKNTRKPLG 71

[Close]
BLAST of ClCG06G013040 vs. TAIR 10
Match: AT5G48870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 46.2 bits (108), Expect = 4.8e-05
Identity = 26/74 (35.14%), Postives = 43/74 (58.11%), Query Frame = 0 

Query: 76  PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHVKKKSKKA--L 135
           P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  +  + ++   L
Sbjct: 10  PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 69

Query: 136 GRILLKGDNITLMM 148
            +ILL G+NI +++
Sbjct: 70  DQILLNGNNIAILV 79

The following BLAST results are available for this feature:
BLAST of ClCG06G013040 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038880616.12.4e-4695.33small nuclear ribonucleoprotein E-like isoform X1 [Benincasa hispida][more]
XP_038880617.12.4e-4695.33small nuclear ribonucleoprotein E-like isoform X2 [Benincasa hispida][more]
KAE8653153.14.0e-4668.52hypothetical protein Csa_019571 [Cucumis sativus][more]
XP_022921760.13.4e-3798.84small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita moschata] >XP_02298... [more]
OIS97104.15.8e-3795.45hypothetical protein A4A49_04200 [Nicotiana attenuata][more]
BLAST of ClCG06G013040 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4FUI21.0e-2872.84Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1[more]
P623031.0e-2872.84Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1[more]
P623041.0e-2872.84Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1[more]
P623051.0e-2872.84Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1[more]
A1XQR91.0e-2872.84Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1[more]
BLAST of ClCG06G013040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JLU41.7e-3798.84Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111485738 PE... [more]
A0A6J1E6Q31.7e-3798.84Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111429915 ... [more]
A0A1J6IPM52.8e-3795.45Sm protein E OS=Nicotiana attenuata OX=49451 GN=A4A49_04200 PE=3 SV=1[more]
A0A6J1ICX73.7e-3797.67Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111471407 PE... [more]
A0A6J1F0M23.7e-3797.67Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111438400 ... [more]
BLAST of ClCG06G013040 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G18740.15.6e-3890.70Small nuclear ribonucleoprotein family protein [more]
AT4G30330.15.6e-3891.76Small nuclear ribonucleoprotein family protein [more]
AT2G18740.22.1e-2988.73Small nuclear ribonucleoprotein family protein [more]
AT5G48870.14.8e-0535.14Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 82..148
e-value: 1.2E-17
score: 74.6
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 83..146
e-value: 5.5E-17
score: 61.2
NoneNo IPR availableGENE3D2.30.30.100coord: 64..149
e-value: 3.3E-40
score: 137.8
NoneNo IPR availablePANTHERPTHR11193:SF10SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 64..149
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 64..149
IPR027078Small nuclear ribonucleoprotein ECDDcd01718Sm_Ecoord: 70..148
e-value: 5.84313E-57
score: 175.05
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 75..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G013040.2ClCG06G013040.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response
biological_process GO:0016310 phosphorylation
biological_process GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0004143 diacylglycerol kinase activity
molecular_function GO:0003951 NAD+ kinase activity
molecular_function GO:0003723 RNA binding