ClCG06G012340 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG06G012340
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr06: 25555892 .. 25560746 (+)
RNA-Seq ExpressionClCG06G012340
SyntenyClCG06G012340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGGAGGTTATGAATTGGGGAGCTCGGGTTTCCACTGCATATTGGTAAGACAATCTTCTCTAAACTCGTTATCTCCAATTTGCCCACTTGCAGGCTTGTTTGTAAAACTTGGAATTTAAAGATTTTAGATTATGCTTCCTCATTTAAATTTCTCAAATGATTTCATTTTCTCCGTCTCTGATGAAGGTCCAAATAGCGAAATTAGGGACATGTGCAATCCCAAGATGTATTGTCTCCGTTTTTGATAATTTGGATGTAGATGTTAGGCCCAATAATAGGATTATTAGGAGAATATTAGTATGGTTATTAGGAGGGATATATTAGTAATTGGATAGTAAGTTTGTTAGGATTTTAGTTATAAATAGAGGGAATGGAATGGGAGCAAGGTGTGAAAATTTTGTTGAATTTCCTTAGTTTGGGAATTTGGGAGAGTCTAGCTCTCTTGAAAGGCTAGTGGTTACCTTTTACTTGTTCCAAGTGATATTGCAATATAATTCTACCTTTTAGCTTTCTTGTTTTGTAATTTGTGTTCTTGAGTTTTCTTATTAGGAGGTATCCTAACAGTAGATTTAGATTTTGATGATTTGGAATTGGAAGGAGATAAATCTGCCCCCTTTAATGGGGACTGGTCCTTGATCACACTGCTCAATTACTGCGAAGGCCTTCTTTTTATTTGCAAATCCACTTCTTACACCATATGTCATGGCATATTCAATTCCATGACTAATGAGTTTTTACAAATTTCTCAAATATTTGGGATACTTATACCTTTGGATTAGGTTACATTCCTACAATGACCCAATACAAATTGTATAGAGCTACTCATTCAGATGTTATTGCCTCTAACTCGCAACGACAACCTAGGACCATAATAGATGTTTTTCACTTTGATAACCCTAAACAAAACTGATGGACGCATCTTCACTCCCTACCTTATTGTCACATCAAAGAATGTGGGGAAATTTGTACGGATGGCCTAAATTGAAGGGCCTTAATGCCTCTCAAATTTTCAATGAAATACGGCATTCTGTTGGCATCAGCGTTGTGTGAAGTTATCGAATTGCCCCCAAAATCGTTATCTAGAGGCGCCCCATGAGTTTTGCTCTTGCTTTCATCTCTCGATCCCCACTATCGACACTCTGTCTCGATCCACAACGGTCAACCATAGTTGACCTTCTAAACGATATCACTCTCACTCCTCAGCTCTTGGCTCCTCGGTACTCTCGCTCTTGGTTCTCGTAAGCTAGCATTCAATAATTGTTATAGATCAACAATTTGAAAAAGTGGGGTACCACATAACTATCTCTCTCAATCGAGCCTACAATTCTATATCTCTCTCGATTCCCATTTCTCTCACTCACTATCGAACACCCACCGTACGATTGGTTCTCCGACGGTCGAACTTTCGCGCCTCTCCCTCCCAACTTCAGACTGTTAGCTGTCGTTTATCTCCAAAGGAATGTTTTATTTTGTGTGTGTTTGTGTTTCGGTCTGGGTTTTGATTCGTTTAATTTTGTTTGCATTTCGCTTGGTTTTCTGCCACATGCACTGGTGTTGGTGTTTGTAGAAGTGTTCGAATTGTACAATAGAATAGGGTTTAGGAGACAAATGGGAGTAAGACATGAGAGAATACGCCGATATCGAGGGTAGTTGTAGGAGACGATATTCAATTTGTATGAGGCGCAAGCATTGTAGATGGTTGTGGGGTACTCTTGGTGGATGGTCGAGAGGTTACAGACAGACTGAAAGTCGAGAATATCGAGAATCGAGAGTGGATTAGATAGATAGTCGAGAGTCGAGAGAGTCAAGAAGCGAGACAGTCAAGAGGGCTGATAATCGAGAGTCGAAAGCCAAGAGAGGAGAGCAAGAGTTTTACAGAAATCTTTTTGGATATCTTTTTCTTTTCCTTTATCTGATTATGTTTTTTTACTTGCACTTGTAGATGGCCAATTTCAAGATTGCTGCTGAAGATCGTTTTCCTGCCCAAGCTACTAGCTTGTCATCGCATATTGGAGTTGTGAACCAACTCATCAAACAGAAGCTAACAGATGGGCAACTAGATATGTTTAGGAGGACGGTGTTTGGGAGGTTCGTGGACATGGACATAGTGTTCAACAGTCCATTAGTCCACCATATTCTGCTGAGGGAGGTACACGTCCAGAACCATAATGATGAGACCATGTATTTCAACCTCAATGGACATACCGTAAAATTCTCCAAGGACGAGTTTCTACTAGTCACTGGACTTTGGAGATCACCAGTGGTAGTTCCTCGCACGACTGTAGTGACCGGTGCTCTTAGGACAAAATATTTCCACGATCTACGTGGGGCAGAGATACACCCGACTGCCTTTGAGGAGCATTACAAGGGGCTACAGTTTGAGACTGACCTAGATGCGGTGAAGGTCAGTCTTATATACATGTATGAGCTCGGGTTGAGTGGGAAGGACAAGACGAAGAGCAACATCGATAGATCGTTGCTCGATGACGTTGATGACTTGGACTTCTTCAACAGCAGAGACTGGGGAAGTATTATATGGGAGCGGACCTTCAATGGCCTTCAGAAGGCCTTGAGGGACAAGGTTTTCGTGTACAAGCAAAAGGCTCGTGCCAACCAGAAGTACGTAGTTAAGTATAACCTACCAGGTTTCCCTCATGCGTTCCAGGTATTGACAATTCAAATAATTTACTGTTGTGTAGTACATTTTTATCTTTGAACTAACTATTTTAATGTTATTAGGTATGGGCATACGAGACCATATCTACGATTGTCGATACAGCTGCGATTCGGCTAAACGAGAATGCGGTGCCCCGTTTTCTACGATGGGCATGTACGTACTCGCTTCCCAACCGAACACTTCAGAGGGATGTTTTTAACTCTCCTGTGGTGAGTTATAATCTTTAAACACGTATATTTTTTAGTTTGTATTTTGTATTGGTTTACCCTTAACGGTGCATTATTTGTTCTTGATGCAGACAGTTATCACCCCAGTCCTCGTACTGTCGGATGCAGAAAGGCGGTATCGAGACACGCCAGTTGCAGAACGAGCTGTGTATGTGGACCGGCCAAATGAGGATAGAGTCCCTAGTTCGAGTCTCACTGGTTCAGACTCAAGTTACAGTAAGGAGCGCCTTATCGCTCTAGAGCATCATGAGGAGCGGCCCATTGACCCTCCAGTTGTATCCAAGAGGAGGAGGGTTGAGAGGGGTGAGCATGACCACACTTCACTCGATGATCGGGTTGCAAGAGTGGAGGAGAAGGTAGACGCAGTGATGTCTGACTTGGATAAGGTCAAATCCCAGTTGCAGACCATTACGACACTACTAGGATCATTATGTCAGGTATGAATTAATTGTCTTAATTAATTGATTTTTTAAAAAATTTAAAGCAATTATTATAATGTTTGAATTTGTGTAGGACTTCCCCCATCCCACCACCCATACTGAGACCACTACCACCCATCCCGATAGCATCACCGAGCTCGAGACCACAATCCATATTAAGACCACTACCACCCATCCCGATACCCCCATCAAGATTGAGACCACCACACATCTTGATCCTGAGCCCGAGTACACCACTCATCTCGAGCTTGGGACCACCACCCATCCTGAGTCCGAGACCACAACCCATCCTAATCTTGACATCACCACCACCCATCCCGAGACTGATACCACCACCACCATCAAGTTTGAGACTATCACCCATCCTGAGACTGATACAACCACCACCATCATCAAGTCTGAGACTACCACCCATCCCGATCTCGACACCACCACCACCCATCTCGAGCTTGATACCACCTCCACCATCATTGAGCCTAAGACCACCCATCTCGATCCTGATATATGAGCAGGGTGGTTTATGATCCGACACATCCCGTGCCTCAGGATGTCTTAAATGCATTCATGGAGGGTGACGACTAATGATGTCGGTCCACATGTACCAGGCACAGGTGCACTATTCTGGCCAAAGATAACCACCCGTGAGGTTTTTCGTGAGTTGGTTAAAGATAGTTGGTGGGTACGCTACGATGTAAGTAACTCATAACTCTTTGTTCTTTGATAATGATTGTTACCAATAGTTATTTGTAACGAAATATAACCTTGTAGGTGCTCGAGAGCATATTGGACTTTCTAAGGAGGAAGTTCATTGCACGTCCCGAGTTGTGTATCCATTGGTTCACCATATTTTCAGAGGCTTATACGGTATGTATCCATACTACCGAGCTATCTATTTATTTTAAATAATGCACTAACATTTTGTATGTCAACTATATAGGGGCACTTGAACCTGCGTATGAGTGATAGCTTGTTCAAAGCTATCTATGGTAAGAGTGACGAGGAGGTAGCAGACATTTGGTCTAAGGAGGACGAGCTAACTTTATTGATGTTCGGGTTAACACTAGATTCGATTGCGTGGGCGATGTCGATTACTTGTATAGTACAATCAACATTCGTGAACATTGGATCCTTCTGGTGTTCGACATCAACCTCGGGGAGATCATCATGTATGACTCATACCCGATGTATGTCTTACAGAGGGATATTGCGATTGCCCTGTTGCCTCTCACATACACGCTGCTATTTGGAGCTTATATCGTGCAAATACTGGCAACATCCAAGGTAGCAAGACTTTGGATTGCGGTATTTATTGTCTTAAATTTTGTGAGTACTTAAGTCACAGGAACCCTTAAAGGGTTCCCTAACTTAGGTTAGGATGTTAGAATTTAGATTTCAGAACGTATGTGAGTTGTGGTCTAACCTGTTCATATATTAGTCTCTAGAGTTGTACATGAAATGTATTGTATATGTATGGTCGATAGTGATAACTGAGAGGAGAGATAAGAATGGAG

mRNA sequence

CTGGAGGTTATGAATTGGGGAGCTCGGGTTTCCACTGCATATTGATGGCCAATTTCAAGATTGCTGCTGAAGATCGTTTTCCTGCCCAAGCTACTAGCTTGTCATCGCATATTGGAGTTGTGAACCAACTCATCAAACAGAAGCTAACAGATGGGCAACTAGATATGTTTAGGAGGACGGTGTTTGGGAGGTTCGTGGACATGGACATAGTGTTCAACAGTCCATTAGTCCACCATATTCTGCTGAGGGAGGTACACGTCCAGAACCATAATGATGAGACCATGTATTTCAACCTCAATGGACATACCGTAAAATTCTCCAAGGACGAGTTTCTACTAGTCACTGGACTTTGGAGATCACCAGTGGTAGTTCCTCGCACGACTGTAGTGACCGGTGCTCTTAGGACAAAATATTTCCACGATCTACGTGGGGCAGAGATACACCCGACTGCCTTTGAGGAGCATTACAAGGGGCTACAGTTTGAGACTGACCTAGATGCGGTGAAGGTCAGTCTTATATACATGTATGAGCTCGGGTTGAGTGGGAAGGACAAGACGAAGAGCAACATCGATAGATCGTTGCTCGATGACGTTGATGACTTGGACTTCTTCAACAGCAGAGACTGGGGAAGTATTATATGGGAGCGGACCTTCAATGGCCTTCAGAAGGCCTTGAGGGACAAGGTTTTCGTGTACAAGCAAAAGGCTCGTGCCAACCAGAAGTACGTAGTTAAGTATAACCTACCAGGTTTCCCTCATGCGTTCCAGGTATGGGCATACGAGACCATATCTACGATTGTCGATACAGCTGCGATTCGGCTAAACGAGAATGCGGTGCCCCGTTTTCTACGATGGGCATGTACGTACTCGCTTCCCAACCGAACACTTCAGAGGGATGTTTTTAACTCTCCTGTGACAGTTATCACCCCAGTCCTCGTACTGTCGGATGCAGAAAGGCGGTATCGAGACACGCCAGTTGCAGAACGAGCTGTGTATGTGGACCGGCCAAATGAGGATAGAGTCCCTAGTTCGAGTCTCACTGGTTCAGACTCAAGTTACAGTAAGGAGCGCCTTATCGCTCTAGAGCATCATGAGGAGCGGCCCATTGACCCTCCAGTTGTATCCAAGAGGAGGAGGGTTGAGAGGGGTGAGCATGACCACACTTCACTCGATGATCGGGTTGCAAGAGTGGAGGAGAAGGTAGACGCAGTGATGTCTGACTTGGATAAGGTCAAATCCCAGTTGCAGACCATTACGACACTACTAGGATCATTATGTCAGGACTTCCCCCATCCCACCACCCATACTGAGACCACTACCACCCATCCCGATACCCCCATCAAGATTGAGACCACCACACATCTTGATCCTGAGCCCGAGTACACCACTCATCTCGAGCTTGGGACCACCACCCATCCTGAGTCCGAGACCACAACCCATCCTAATCTTGACATCACCACCACCCATCCCGAGACTGATACCACCACCACCATCAAGTTTGAGACTATCACCCATCCTGAGACTGATACAACCACCACCATCATCAAGTCTGAGACTACCACCCATCCCGATCTCGACACCACCACCACCCATCTCGAGCTTGATACCACCTCCACCATCATTGAGCCTAAGACCACCCATCTCGATCCTGATATATGAGCAGGGTGGTTTATGATCCGACACATCCCGTGCCTCAGGATGTCTTAAATGCATTCATGGAGGGTGACGACTAATGATGTCGGTCCACATGTACCAGGCACAGGTGCACTATTCTGGCCAAAGATAACCACCCGTGAGGTTTTTCGTGAGTTGGTTAAAGATAGTTGGTGGGTACGCTACGATGTGCTCGAGAGCATATTGGACTTTCTAAGGAGGAAGTTCATTGCACGTCCCGAGTTGTGTATCCATTGGTTCACCATATTTTCAGAGGCTTATACGGGGCACTTGAACCTGCGTATGAGTGATAGCTTGTTCAAAGCTATCTATGGTAAGAGTGACGAGGAGGTAGCAGACATTTGGTCTAAGGAGGACGAGCTAACTTTATTGATGTTCGGGTTAACACTAGATTCGATTGCGTGGGCGATGTCGATTACTTGTATAGTACAATCAACATTCGTGAACATTGGATCCTTCTGGTGTTCGACATCAACCTCGGGGAGATCATCATGTATGACTCATACCCGATGTATGTCTTACAGAGGGATATTGCGATTGCCCTGTTGCCTCTCACATACACGCTGCTATTTGGAGCTTATATCGTGCAAATACTGGCAACATCCAAGGTAGCAAGACTTTGGATTGCGGTATTTATTGTCTTAAATTTTGTGAGTACTTAAGTCACAGGAACCCTTAAAGGGTTCCCTAACTTAGGTTAGGATGTTAGAATTTAGATTTCAGAACGTATGTGAGTTGTGGTCTAACCTGTTCATATATTAGTCTCTAGAGTTGTACATGAAATGTATTGTATATGTATGGTCGATAGTGATAACTGAGAGGAGAGATAAGAATGGAG

Coding sequence (CDS)

ATGCATTCATGGAGGGTGACGACTAATGATGTCGGTCCACATGTACCAGGCACAGGTGCACTATTCTGGCCAAAGATAACCACCCGTGAGGTTTTTCGTGAGTTGGTTAAAGATAGTTGGTGGGTACGCTACGATGTGCTCGAGAGCATATTGGACTTTCTAAGGAGGAAGTTCATTGCACGTCCCGAGTTGTGTATCCATTGGTTCACCATATTTTCAGAGGCTTATACGGGGCACTTGAACCTGCGTATGAGTGATAGCTTGTTCAAAGCTATCTATGGTAAGAGTGACGAGGAGGTAGCAGACATTTGGTCTAAGGAGGACGAGCTAACTTTATTGATGTTCGGGTTAACACTAGATTCGATTGCGTGGGCGATGTCGATTACTTGTATAGTACAATCAACATTCGTGAACATTGGATCCTTCTGGTGTTCGACATCAACCTCGGGGAGATCATCATGTATGACTCATACCCGATGTATGTCTTACAGAGGGATATTGCGATTGCCCTGTTGCCTCTCACATACACGCTGCTATTTGGAGCTTATATCGTGCAAATACTGGCAACATCCAAGGTAG

Protein sequence

MHSWRVTTNDVGPHVPGTGALFWPKITTREVFRELVKDSWWVRYDVLESILDFLRRKFIARPELCIHWFTIFSEAYTGHLNLRMSDSLFKAIYGKSDEEVADIWSKEDELTLLMFGLTLDSIAWAMSITCIVQSTFVNIGSFWCSTSTSGRSSCMTHTRCMSYRGILRLPCCLSHTRCYLELISCKYWQHPR
Homology
[Close]
BLAST of ClCG06G012340 vs. NCBI nr
Match: XP_038902498.1 (uncharacterized protein LOC120089158 [Benincasa hispida])

HSP 1 Score: 58.5 bits (140), Expect = 7.1e-05
Identity = 38/116 (32.76%), Postives = 58/116 (50.00%), Query Frame = 0 

Query: 28  TREVFRELVKDSWWVRYDVLESILDFLRRKFIARPELCIHWFTIFSEAYTGHLNLRMSDS 87
           ++  F+EL + S WV  D L  I +F++ KF  +P++C+  FTI     T HLN R  D 
Sbjct: 147 SKTFFQELTEPSSWVECDTLNVIFEFMKEKFYRQPDMCMARFTILPIGITSHLNSR--DG 206

Query: 88  LFKAIYGKSDEEVADIWSKEDELTLLMFGLTLDSIAWAMSITCIVQSTFVNIGSFW 144
           ++K +  KS  E A  W  E   TL  + +    + W + +  I  +T  NI   W
Sbjct: 207 VYKHMKNKSTLEAAVAWVDE---TLPDYVMGKFDVKW-LDVDFIYTTT--NIDQHW 254

[Close]
BLAST of ClCG06G012340 vs. NCBI nr
Match: XP_038899753.1 (uncharacterized protein LOC120086987 [Benincasa hispida] >XP_038899754.1 uncharacterized protein LOC120086987 [Benincasa hispida])

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-04
Identity = 38/119 (31.93%), Postives = 58/119 (48.74%), Query Frame = 0 

Query: 25  KITTREVFRELVKDSWWVRYDVLESILDFLRRKFIARPELCIHWFTIFSEAYTGHLNLRM 84
           K   ++ F+EL+  S WV+ D +     F++ K   +P++C+H FTI S   T HLN   
Sbjct: 20  KPLAKQFFKELIASSSWVKCDKIILYFIFMKEKLYTQPDMCMHKFTILSIGVTSHLNAH- 79

Query: 85  SDSLFKAIYGKSDEEVADIWSKEDELTLLMFGLTLDSIAWAMSITCIVQSTFVNIGSFW 144
              +F+ I  K+  E A  W  EDE T   + +    + WA  +  I   T +NI   W
Sbjct: 80  -GGVFRRIKNKTLLEAALAW--EDEDTYKNYVIGKFDVKWA-DVDFIY--TAMNISEHW 131

The following BLAST results are available for this feature:
BLAST of ClCG06G012340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038902498.17.1e-0532.76uncharacterized protein LOC120089158 [Benincasa hispida][more]
XP_038899753.11.6e-0431.93uncharacterized protein LOC120086987 [Benincasa hispida] >XP_038899754.1 unchara... [more]
BLAST of ClCG06G012340 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG06G012340 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG06G012340 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G012340.1ClCG06G012340.1mRNA