|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTGCCCATTGAAAGAGCTATGACGTCAAAACTGGCAATAGCAGAATCAACCGCCATGATTCTGACACCTTCTCATCCTCAAGATCTAATAACAACCGTCCGATCCTTTCTTCAGTATCAGGGGACAAAAAGGTAATTTCGGAATCTCCCCGTCGCTATAAAAAGGGCAAGAAGATGCAGAGAATCAAAGGGACGAAGAGCGAACCTCGGCCGGTGATCGGAGCTCTTTGAAAACCCTAGAAAAGAAAGTTCAGTTGGCTGTGCTTTTGCAGAGAAGGCTCCCTCTTAGGGAATGCAGAGAGATGAGAGGAGATTTGTTTACAAGTTTCATCTCTAGTGGTCGAGCTGGCAACTGCATCGGCGGCCGGAACTGCCATCGGAAACACGTCGAAGACGGGTGA mRNA sequence ATGGTGCCCATTGAAAGAGCTATGACGTCAAAACTGGCAATAGCAGAATCAACCGCCATGATTCTGACACCTTCTCATCCTCAAGATCTAATAACAACCGTCCGATCCTTTCTTCAGTATCAGGGGACAAAAAGGGACGAAGAGCGAACCTCGGCCGGTGATCGGAGCTCTTTGAAAACCCTAGAAAAGAAAGTTCAGTTGGCTGTGCTTTTGCAGAGAAGGCTCCCTCTTAGGGAATGCAGAGAGATGAGAGGAGATTTGTTTACAAGTTTCATCTCTAGTGGTCGAGCTGGCAACTGCATCGGCGGCCGGAACTGCCATCGGAAACACGTCGAAGACGGGTGA Coding sequence (CDS) ATGGTGCCCATTGAAAGAGCTATGACGTCAAAACTGGCAATAGCAGAATCAACCGCCATGATTCTGACACCTTCTCATCCTCAAGATCTAATAACAACCGTCCGATCCTTTCTTCAGTATCAGGGGACAAAAAGGGACGAAGAGCGAACCTCGGCCGGTGATCGGAGCTCTTTGAAAACCCTAGAAAAGAAAGTTCAGTTGGCTGTGCTTTTGCAGAGAAGGCTCCCTCTTAGGGAATGCAGAGAGATGAGAGGAGATTTGTTTACAAGTTTCATCTCTAGTGGTCGAGCTGGCAACTGCATCGGCGGCCGGAACTGCCATCGGAAACACGTCGAAGACGGGTGA Protein sequence MVPIERAMTSKLAIAESTAMILTPSHPQDLITTVRSFLQYQGTKRDEERTSAGDRSSLKTLEKKVQLAVLLQRRLPLRECREMRGDLFTSFISSGRAGNCIGGRNCHRKHVEDG
Homology
BLAST of ClCG06G012310 vs. NCBI nr
Match: KGN65247.1 (hypothetical protein Csa_019669 [Cucumis sativus]) HSP 1 Score: 131.3 bits (329), Expect = 5.1e-27 Identity = 71/107 (66.36%), Postives = 79/107 (73.83%), Query Frame = 0
Query: 8 MTSKLAIAESTAMILTPSHPQDLITTVRSFLQYQGTKRDEERTSAGDRSSLKTLEKKVQL 67
MTSKL +A STAMILTPSHP+DL+ TVR FLQY R + ++K+QL
Sbjct: 1 MTSKLGMAGSTAMILTPSHPRDLLLTVRLFLQYL-------------RRKINPRKEKLQL 60
Query: 68 AVLLQRRLPLRECREMRGDLFTSFISSGRAGNCIGGRNCHRKHVEDG 115
AV +RRL LRECREMRGD FTSFISSGRAGN IGGRNCHRKHVEDG
Sbjct: 61 AVRFERRLSLRECREMRGDWFTSFISSGRAGNSIGGRNCHRKHVEDG 94
BLAST of ClCG06G012310 vs. ExPASy TrEMBL
Match: A0A0A0LWM6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269890 PE=4 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 2.5e-27 Identity = 71/107 (66.36%), Postives = 79/107 (73.83%), Query Frame = 0
Query: 8 MTSKLAIAESTAMILTPSHPQDLITTVRSFLQYQGTKRDEERTSAGDRSSLKTLEKKVQL 67
MTSKL +A STAMILTPSHP+DL+ TVR FLQY R + ++K+QL
Sbjct: 1 MTSKLGMAGSTAMILTPSHPRDLLLTVRLFLQYL-------------RRKINPRKEKLQL 60
Query: 68 AVLLQRRLPLRECREMRGDLFTSFISSGRAGNCIGGRNCHRKHVEDG 115
AV +RRL LRECREMRGD FTSFISSGRAGN IGGRNCHRKHVEDG
Sbjct: 61 AVRFERRLSLRECREMRGDWFTSFISSGRAGNSIGGRNCHRKHVEDG 94
BLAST of ClCG06G012310 vs. ExPASy TrEMBL
Match: A0A5A7SWZ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G001200 PE=4 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 8.6e-04 Identity = 32/52 (61.54%), Postives = 35/52 (67.31%), Query Frame = 0
Query: 8 MTSKLAIAESTAMILTPSHPQDLITTVRSFL--------QYQGTKRDEERTS 52
MTSKLA+A STAMILTP HP DL+ TVR F + Q KRDEERTS
Sbjct: 1 MTSKLAMAGSTAMILTPPHPPDLLPTVRLFFFPRYKKGKKMQRIKRDEERTS 52
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN65247.1 | 5.1e-27 | 66.36 | hypothetical protein Csa_019669 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LWM6 | 2.5e-27 | 66.36 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269890 PE=4 SV=1 | [more] |
| A0A5A7SWZ1 | 8.6e-04 | 61.54 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
|
