Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGGCACCATGTGAGTGGAAGGGTTTTAAGAGGGGTTAGGGGAATGTTGAGAGGTTGGAATTGTGAGGTGATCAAGCCTAGCTTTGAGGGAGAGCATTTCCAGCCCTCTTTATGGTACTATCTTTCTATTTCTTTTTTGTCTTTCCTGAGCTTGTATTTCATCCAAGCAAGTATATTAAATAAAGTCTCTGAAGTATTGAATTCTGCAGGGAATTGCCATTTGACGTTATTCTGATTATCAATTGTTAGAATCCTAACAATTTTGGTATCTGAGCCATTCGACACCCTAGGAAGAACAAGAAGTGAAACCAAGAGGGAGATAGAAGAGAAAATTGAAAATAATGTCCAAGGAATTTTTGAATTGAAAGAATGGATGATCGAGATGAGCAAAACCATAGACCTCGTGGCAGCAAATGTTCAGAACCTGATGAACTTACGAGAGGAGGGTTCAGTCTTACAATCGAGGACGCTGCCAACGTCAAAGGAAAAAGAGACCGAAGAAGGAGAAAGTTCTCATAGAAGATCGGGAAATGAAGTTGACCGAAGCAAATACAAGAGGTTGGAGATGCCGATTCTTTCAGGTGAGAATCCGGATTCATGGGTTTATCGAGCGGAACATTACTTTGAAATTCATGAATTAGATGATTTGGAGAAAATCAAAGTGGCAATCATTGCTTTCGCACCCGATGGGGTTGACTGGTTTCGATGGACACACAATCGACGACCGATTCTAACATGGGAAGCTTTGAAGGAGAGACTATTCAGTCTATTTCGGCCAGCACAAGAAGGTATGCTTCTTTCTCAATTGCTACGAATCCAGCAAGAAGGAACTTATGAAGAGTACCTTAAGAAATTTGGGACGTACTCGGCTCCTCTACCGAACACGGTCCCCGCGGTTAGTGATTGGAATGTGGCCTTGAAGTTAGCAGCGGAGGAAATGGGCTCGGATCGTGGGTTGGCCCAACAAGGTGGGTTAGCTAAAAAAACCAAAAGAAAAATACTGCAGAGTCAACCCTAAAGAGCGTGGTAATCCCCGACAAAGGAGAATTAGGAAAAAAAAGAGGTCCCATGTTGCTAATTATCTAATGCTGAGGCGAAGGTGAAGCGAGACAAAGGCTTATGTTTCCGTTGTGACGAGAGGTATTTCAGAGGCCATAAATGCAAGACGGAGGAGAGAGAACTTAATTTGTTGATCGTCCATGACGAAAAGGAAGAGGATTTATGAAGTCGAGCTATTGAACGAAGAAGTACTGGAGATGAAGGTTTTGGAGGTAGACAATAATGTGGAAGTAGCATTGCGATCGATTCTGGGATTTTCAGCGACGAGAACTATGAAATTAAAAGGGTTAGCCGCCGGAAAAGAAGTTGTGGTGATGGTGAACTGCAGTGCGACCCATAACTTCATATATTAGAGGCTAGTGGACGAACTTCAATTGCCACTGTTGGAGACTTCTCATTACGAGGTAGGGAATGGTGTGGCTCTCAAGGGAAAAAGGATTTGCAAATCAGTGATCGTGGTTTTACTGAATGTAACTATTAAGGAAAATTTTCCACCTCTGGAATTGAGCCGAGTCGACGTGATCTTGGGTATGGTCTGGTTATGTAACATGGGCTATATGGAGGTGAATTGGCCAACATTGACTATGATGTTTCTGTCCGGAGAACAGAGAATTACGCTGAAAGGAGATCCTTCCTTAATCACGGAAAAGGTAACCTTGAAAACATTTTTTTTTTTTTGTGTTAAAAGGAAACATGACTTTTTCATTGATAAAATGAAAAGAGCCAATAGCTCAAAGTACAAAGGAAACAAAAGGAAAACAAGCAAACAAACAAAATAGAAACTGAGGAAAGACAATTACACAATTGAAAAAACTAAAACATTGAAGAGAAGAAAATACAATCGACTAAAGAGCTAAAGAGCCAAAAAACGAGCCGAATAAAACATTTTAACTTATTTAAAAAGTTTAAAATGATTAGTCATTAATCTAAATATTTTATTTTTGAATTTTTTGTTTTTATATTTTTCCATTAATTTTTATCGACATTTTCATCACCATCGACATTTTGAATCTTGAAAAGATTGTGAGTATATGCAGGGGAAGTACCTGTTCCTCTAGACTCAACTCCTGAACGTATCTCCTCGACAGTCATAACACTATCTTCAAGTGCATTATTTTTCACCTATTGGGAAATAATTTAAGAATAAGAATCCTTCAAAGCACTTCTGATTTTTTATCAAAATACTTGTGGAATTTTGACAATCTCTTTTAGTAGGATAATAGCAATTTTTACACTTCCAAACCATTCCAAACTCACTCACAACTATAATAATTAATAAGTATTTGGTTAAATTACAAATTTAGTTCTTTCTTAACTTTAAGGTTTGCCTATTTAGTCCTTGAATTTTCAAAACTACAAATTTAGTCCTTAAAGTTCTAAATTTTCACAAATCTACTAGAACACAAGACAAAAAAGTGAAAGTTTAAAATTCCATTAGCATAAAATCACATCTAACAGATCAAGTAATTTTGAAAATTTTCAAATTTGGAAGGATTTATTGAACACAAAGTTGAACTGAAAGTCTAGAGAATTTGACACTTTTGAAAGTTGATGGACCAAATAGACATATATCAAAATTTTGAGACTAAACTTATAATTTAACTAGAGTATTTAGTTCTTACAAAGTGCAAAATGATGTCAGCCCAATCTTGAATCCGGTGCCATAAAATAAGGCATTTCCTATGTCCTTTATCCAGCCATTCTGCACGACCTATAGGACAATTAAAATGAACAAATATCAATTTTTTCCCTATGAAAATGAATGAGAACTGTAAACAGATAGAATTTTAGAACTAAACTAGCAGGCCCTAACCATCTGAAACTAAAGCTAAGAGAAAAGCTTCTCTAGCTTCGTGACTGAGAGATCCTGTAGCATCACAACCACACTGTAAAATACATCAAACAACTGCAACAGCAATACACAGTTTCGTGACCGAGTCTAAAACACCAAGAGGTTTTAACAGCCAATTAGGACCAAACAAGGCCATGAAATTTACTTTCAATCACAGAGTTTGAAAATAGAGGAAAGTCCTCTTCGAGTCCAATGACAAATATCTTTTGCATTCGGCAGTAATCAAGGATAAGTTCCTTCCAAAGTTGAATTTGCTTCTCACGGGTGTCCCTCACTGGTTGCAAACTGAGATGACATGCAATAAAAAGGTTATATATGCAACTCAAGGCAGAAGACAAACTTGAGAAAAGTGAAAGAATCAACGTTATCCAACAAGAATTGCAGGATTGCAGTTAAGGTACAACTTTACAACTATCACATTCATTATATGAGGCTGGTGGGGAAAGTATAGGGGATCTAGTATATGCAGTTTCCGTTTACTGTTGTGTAACTACTAGTTGAGCAATGAAGTGTCAGTTTTCTTTGCTCAGGATCATCAAAACCAAGATATCAACATCATCAGAAAATGA
mRNA sequence
ATGGAGGGGCACCATGTGAGTGGAAGGGTTTTAAGAGGGGTTAGGGGAATGTTGAGAGGTTGGAATTGTGAGGTGATCAAGCCTAGCTTTGAGGGAGAGCATTTCCAGCCCTCTTTATGGTACTATCTTTCTATTTCTTTTTTGTCTTTCCTGAGCTTGTATTTCATCCAAGCAAGAAGAACAAGAAGTGAAACCAAGAGGGAGATAGAAGAGAAAATTGAAAATAATGTCCAAGGAATTTTTGAATTGAAAGAATGGATGATCGAGATGAGCAAAACCATAGACCTCGTGGCAGCAAATGTTCAGAACCTGATGAACTTACGAGAGGAGGGTTCAGTCTTACAATCGAGGACGCTGCCAACGTCAAAGGAAAAAGAGACCGAAGAAGGAGAAAGTTCTCATAGAAGATCGGGAAATGAAGTTGACCGAAGCAAATACAAGAGGTTGGAGATGCCGATTCTTTCAGGTGAGAATCCGGATTCATGGGTTTATCGAGCGGAACATTACTTTGAAATTCATGAATTAGATGATTTGGAGAAAATCAAAGTGGCAATCATTGCTTTCGCACCCGATGGGGTTGACTGGTTTCGATGGACACACAATCGACGACCGATTCTAACATGGGAAGCTTTGAAGGAGAGACTATTCAGTCTATTTCGGCCAGCACAAGAAGGTATGCTTCTTTCTCAATTGCTACGAATCCAGCAAGAAGGAACTTATGAAGAGTACCTTAAGAAATTTGGGACGTACTCGGCTCCTCTACCGAACACGGTCCCCGCGGTTAGTGATTGGAATGTGGCCTTGAAGTTAGCAGCGGAGGAAATGGGCTCGGATCGTGGGTTGGCCCAACAAGGTGGAGTCAACCCTAAAGAGCGTGGTAATCCCCGACAAAGGAGAATTAGGAAAAAAAAGAGGTCCCATGTTGCTAATTATCTAATGCTGAGGCGAAGGAAGAGGATTTATGAAGTCGAGCTATTGAACGAAGAAGTACTGGAGATGAAGGTTTTGGAGGTAGACAATAATGTGGAAGTAGCATTGCGATCGATTCTGGGATTTTCAGCGACGAGAACTATGAAATTAAAAGGGTTAGCCGCCGGAAAAGAAGTTGTGGTGATGAGGCTAGTGGACGAACTTCAATTGCCACTGTTGGAGACTTCTCATTACGAGGTAGGGAATGGTGTGGCTCTCAAGGGAAAAAGGATTTGCAAATCAGTGATCGTGGTTTTACTGAATGTAACTATTAAGGAAAATTTTCCACCTCTGGAATTGAGCCGAGTCGACGTGATCTTGGGTATGGTCTGGTTATGTAACATGGGCTATATGGAGGTGAATTGGCCAACATTGACTATGATGTTTCTGTCCGGAGAACAGAGAATTACGCTGAAAGGAGATCCTTCCTTAATCACGGAAAAGAGGAAAGTCCTCTTCGAGTCCAATGACAAATATCTTTTGCATTCGGCAGTAATCAAGGATAAGTTCCTTCCAAAGTTGAATTTGCTTCTCACGGGTGTCCCTCACTGGCAGAAGACAAACTTGAGAAAAGTGAAAGAATCAACGTTATCCAACAAGAATTGCAGGATTGCAGTTAAGGCTGGTGGGGAAAGTATAGGGGATCTAGTATATGCAGTTTCCGTTTACTGTTGTGATCATCAAAACCAAGATATCAACATCATCAGAAAATGA
Coding sequence (CDS)
ATGGAGGGGCACCATGTGAGTGGAAGGGTTTTAAGAGGGGTTAGGGGAATGTTGAGAGGTTGGAATTGTGAGGTGATCAAGCCTAGCTTTGAGGGAGAGCATTTCCAGCCCTCTTTATGGTACTATCTTTCTATTTCTTTTTTGTCTTTCCTGAGCTTGTATTTCATCCAAGCAAGAAGAACAAGAAGTGAAACCAAGAGGGAGATAGAAGAGAAAATTGAAAATAATGTCCAAGGAATTTTTGAATTGAAAGAATGGATGATCGAGATGAGCAAAACCATAGACCTCGTGGCAGCAAATGTTCAGAACCTGATGAACTTACGAGAGGAGGGTTCAGTCTTACAATCGAGGACGCTGCCAACGTCAAAGGAAAAAGAGACCGAAGAAGGAGAAAGTTCTCATAGAAGATCGGGAAATGAAGTTGACCGAAGCAAATACAAGAGGTTGGAGATGCCGATTCTTTCAGGTGAGAATCCGGATTCATGGGTTTATCGAGCGGAACATTACTTTGAAATTCATGAATTAGATGATTTGGAGAAAATCAAAGTGGCAATCATTGCTTTCGCACCCGATGGGGTTGACTGGTTTCGATGGACACACAATCGACGACCGATTCTAACATGGGAAGCTTTGAAGGAGAGACTATTCAGTCTATTTCGGCCAGCACAAGAAGGTATGCTTCTTTCTCAATTGCTACGAATCCAGCAAGAAGGAACTTATGAAGAGTACCTTAAGAAATTTGGGACGTACTCGGCTCCTCTACCGAACACGGTCCCCGCGGTTAGTGATTGGAATGTGGCCTTGAAGTTAGCAGCGGAGGAAATGGGCTCGGATCGTGGGTTGGCCCAACAAGGTGGAGTCAACCCTAAAGAGCGTGGTAATCCCCGACAAAGGAGAATTAGGAAAAAAAAGAGGTCCCATGTTGCTAATTATCTAATGCTGAGGCGAAGGAAGAGGATTTATGAAGTCGAGCTATTGAACGAAGAAGTACTGGAGATGAAGGTTTTGGAGGTAGACAATAATGTGGAAGTAGCATTGCGATCGATTCTGGGATTTTCAGCGACGAGAACTATGAAATTAAAAGGGTTAGCCGCCGGAAAAGAAGTTGTGGTGATGAGGCTAGTGGACGAACTTCAATTGCCACTGTTGGAGACTTCTCATTACGAGGTAGGGAATGGTGTGGCTCTCAAGGGAAAAAGGATTTGCAAATCAGTGATCGTGGTTTTACTGAATGTAACTATTAAGGAAAATTTTCCACCTCTGGAATTGAGCCGAGTCGACGTGATCTTGGGTATGGTCTGGTTATGTAACATGGGCTATATGGAGGTGAATTGGCCAACATTGACTATGATGTTTCTGTCCGGAGAACAGAGAATTACGCTGAAAGGAGATCCTTCCTTAATCACGGAAAAGAGGAAAGTCCTCTTCGAGTCCAATGACAAATATCTTTTGCATTCGGCAGTAATCAAGGATAAGTTCCTTCCAAAGTTGAATTTGCTTCTCACGGGTGTCCCTCACTGGCAGAAGACAAACTTGAGAAAAGTGAAAGAATCAACGTTATCCAACAAGAATTGCAGGATTGCAGTTAAGGCTGGTGGGGAAAGTATAGGGGATCTAGTATATGCAGTTTCCGTTTACTGTTGTGATCATCAAAACCAAGATATCAACATCATCAGAAAATGA
Protein sequence
MEGHHVSGRVLRGVRGMLRGWNCEVIKPSFEGEHFQPSLWYYLSISFLSFLSLYFIQARRTRSETKREIEEKIENNVQGIFELKEWMIEMSKTIDLVAANVQNLMNLREEGSVLQSRTLPTSKEKETEEGESSHRRSGNEVDRSKYKRLEMPILSGENPDSWVYRAEHYFEIHELDDLEKIKVAIIAFAPDGVDWFRWTHNRRPILTWEALKERLFSLFRPAQEGMLLSQLLRIQQEGTYEEYLKKFGTYSAPLPNTVPAVSDWNVALKLAAEEMGSDRGLAQQGGVNPKERGNPRQRRIRKKKRSHVANYLMLRRRKRIYEVELLNEEVLEMKVLEVDNNVEVALRSILGFSATRTMKLKGLAAGKEVVVMRLVDELQLPLLETSHYEVGNGVALKGKRICKSVIVVLLNVTIKENFPPLELSRVDVILGMVWLCNMGYMEVNWPTLTMMFLSGEQRITLKGDPSLITEKRKVLFESNDKYLLHSAVIKDKFLPKLNLLLTGVPHWQKTNLRKVKESTLSNKNCRIAVKAGGESIGDLVYAVSVYCCDHQNQDINIIRK
Homology
BLAST of ClCG06G010650 vs. NCBI nr
Match:
KAA0061366.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14721.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 256.9 bits (655), Expect = 4.0e-64
Identity = 173/508 (34.06%), Postives = 261/508 (51.38%), Query Frame = 0
Query: 66 KREIEEKIENNVQGIFELKEWMIEMSKTIDLVAANVQ--NLMNLREEGSVLQSRTLPTSK 125
+R++EEK++ + I LKE M+EM K ++ +A ++ + +EE ++ K
Sbjct: 3 QRQMEEKVDGTEKEILSLKEMMLEMKKAVERLADEMKESHSYKKKEESGTTSDGSVMKLK 62
Query: 126 EKETEEGESSHRRSGNEVDRSKYKRLEMPILSGENPDSWVYRAEHYFEIHELDDLEKIKV 185
K +E E +G DRSKYK+LEMP+ GENP+SWVYRAEH+FEI+ L + EK+KV
Sbjct: 63 GK-LDETELITETNGAVTDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKV 122
Query: 186 AIIAFAPDGVDWFRWTHNRRPILTWEALKERLFSLFRPAQEGMLLSQLLRIQQEGTYEEY 245
A+++F D VDW+RW+HNR+ + +WE LK R+F FR + + L ++L+RIQQ+G+Y +Y
Sbjct: 123 AVVSFGQDEVDWYRWSHNRKKVESWEDLKSRMFEFFRDSGQKSLGARLIRIQQDGSYNDY 182
Query: 246 LKKFGTYSAPLP-----------------------------------NTVPAVSDWNVAL 305
+KKF TYS+PLP V+D N+AL
Sbjct: 183 VKKFVTYSSPLPYMAESVLVDASVTGLEPSLQAEVISRHPQTLEEYMREAQLVNDRNLAL 242
Query: 306 KLAAEEMGS---DRGLAQQGGVNPK-ERGNPRQRRIRKKK-------------------- 365
KL E+G D G + +G + E+ PR+ + K+
Sbjct: 243 KLTKMELGMTEWDEGGSSKGRKTEEIEKAMPRKTDFQMKQIPIKGHFKKGEPPVKRLSDA 302
Query: 366 --RSHVANYLMLR-------------RRKRIYEVELLNEE---------------VLEMK 425
R+ + L R + KR ++NEE +E+K
Sbjct: 303 EFRARLDRGLCFRCNDKYSPGHRCKTKEKRELMFFIMNEEDETEEVNSKDEMAERTVELK 362
Query: 426 VLEVDNNVEVALRSILGFSATRTMKLKGLAAGKEVVVM------------RLVDELQLPL 469
LE+ + E+ L+++ S+ TMKLKG KE+VV+ L ELQ+ L
Sbjct: 363 NLELTEDTEIELKTMTNLSSKGTMKLKGWVRQKEIVVLINSGATHNFIHQALAKELQMGL 422
BLAST of ClCG06G010650 vs. NCBI nr
Match:
KAA0056659.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 250.4 bits (638), Expect = 3.7e-62
Identity = 165/508 (32.48%), Postives = 263/508 (51.77%), Query Frame = 0
Query: 66 KREIEEKIENNVQGIFELKEWMIEMSKTIDLVAANVQNLMNLREEGSVLQSRTLPTSKEK 125
+R++EE++E + + LKE M+EM K++D +A +++ ++E S R++ K K
Sbjct: 3 QRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRDQSYKKKEESGTSDRSIMKMKGK 62
Query: 126 ETEEGESSHRRSGNEVDRSKYKRLEMPILSGENPDSWVYRAEHYFEIHELDDLEKIKVAI 185
EE + + +++DRSKYK+LEMP+ GENP+SWVYRAEH+FEI+ L + EK+KVA+
Sbjct: 63 -MEETDVTGEIHTHQIDRSKYKKLEMPMFQGENPESWVYRAEHFFEINNLPEAEKVKVAV 122
Query: 186 IAFAPDGVDWFRWTHNRRPILTWEALKERLFSLFRPAQEGMLLSQLLRIQQEGTYEEYLK 245
++F D VDW+RW+HNRR + +WE LK R+F FR + L ++L+RIQQEG+Y +Y+K
Sbjct: 123 VSFGQDEVDWYRWSHNRRKVESWEDLKTRMFEFFRDTGQKSLGARLIRIQQEGSYSDYVK 182
Query: 246 KFGTYSAPLPNTV-------------PA----------------------VSDWNVALKL 305
KF YSAPLP+ PA V+D N+ALKL
Sbjct: 183 KFVNYSAPLPHMAESVLRDAFLTGLEPALQAEVMSRHPQTLEECMMAAQLVNDRNLALKL 242
Query: 306 AAEEMG-----------------SDRGLAQQGGVNPK----------ERGNPRQRRIRKK 365
A EMG +D+G+ ++ K ++G P +R+
Sbjct: 243 AQAEMGIMEPKRSETAGNKVPWNNDKGIMRKNEFQMKQITIPLKGSYQKGEPPVKRLSDA 302
Query: 366 K-RSHVANYLMLR-------------RRKRIYEVELLNEE---------------VLEMK 425
+ R+ + L R + KR + +LNEE +E+
Sbjct: 303 EFRARLDKGLCFRCSEKYSHGHRCKIKEKRELMLFILNEEESTEEGESSKAPNTGPVEIN 362
Query: 426 VLEVDNNVEVALRSILGFSATRTMKLKGLAAGKEVVVM------------RLVDELQLPL 469
LE + R+I + TMKL+G+ GKE++V+ L E ++P+
Sbjct: 363 QLEGPEETMIEYRAITSLTTKGTMKLRGIVKGKEIIVLIDSGATHNFIHHELATERKIPI 422
BLAST of ClCG06G010650 vs. NCBI nr
Match:
KAA0061073.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 248.4 bits (633), Expect = 1.4e-61
Identity = 175/509 (34.38%), Postives = 261/509 (51.28%), Query Frame = 0
Query: 66 KREIEEKIENNVQGIFELKEWMIEMSKTIDLVAANV-QNLMNLREEGSVLQSRTLPTSKE 125
+R++EE++E + + +KE ++EM K ++ +A + +N ++E S S +
Sbjct: 3 QRQMEERVEGTEKELLSMKEMLLEMKKAVERLADEMKENHSYKKKEESGTTSDGSVMKLK 62
Query: 126 KETEEGESSHRRSGNEVDRSKYKRLEMPILSGENPDSWVYRAEHYFEIHELDDLEKIKVA 185
+ +E E +G DRSKYK+LEMP+ GENP+SWVYRAEH+FEI+ L + EK+KVA
Sbjct: 63 GKMDETEPITEINGTVTDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLSESEKVKVA 122
Query: 186 IIAFAPDGVDWFRWTHNRRPILTWEALKERLFSLFRPAQEGMLLSQLLRIQQEGTYEEYL 245
+++F D VDW+RW+HNR+ + +WE LK R+F FR + + L ++L+RIQQEG+Y EY+
Sbjct: 123 VVSFGQDEVDWYRWSHNRKKVESWEDLKSRMFEFFRDSGQKSLGARLIRIQQEGSYNEYV 182
Query: 246 KKFGTYSAPLP-----------------------------------NTVPAVSDWNVALK 305
KKF TYSAPLP V+D N ALK
Sbjct: 183 KKFVTYSAPLPYMAESVLVDAFVTGLEPSLQAEVISRHPQTLEDCMREAQLVNDRNYALK 242
Query: 306 LAAEEM-------GSDRGLAQQGGVN---PK-----------------ERGNPRQRRIRK 365
L+ E+ G + + G V+ P+ ++G P +R+
Sbjct: 243 LSKMELGMTEWEVGGSSKVKKLGDVDKPPPRKTDFQMKQITIPIKGNFKKGEPPVKRLSD 302
Query: 366 KK-RSHVANYLMLR-------------RRKRIYEVELLN---------------EEVLEM 425
+ R+ + L R + KR ++N EE +E+
Sbjct: 303 AEFRARLDRGLCFRCNDKYSPGHRCKTKEKRELMFFIMNEEEEDEEGDSQEEVIEETVEL 362
Query: 426 KVLEVDNNVEVALRSILGFSATRTMKLKGLAAGKEVVVM------------RLVDELQLP 469
K LE+ + + L+++ S+ TMKLKG KEVVV+ L EL+L
Sbjct: 363 KTLELTDETAIELKTMTRISSKGTMKLKGWIRQKEVVVLIDSGATHNFIHHSLAAELELG 422
BLAST of ClCG06G010650 vs. NCBI nr
Match:
TYK21035.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30523.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 248.4 bits (633), Expect = 1.4e-61
Identity = 166/508 (32.68%), Postives = 262/508 (51.57%), Query Frame = 0
Query: 66 KREIEEKIENNVQGIFELKEWMIEMSKTIDLVAANVQNLMNLREEGSVLQSRTLPTSKEK 125
+R++EE++E + + LKE M+EM K++D +A +++ ++E S ++ K K
Sbjct: 3 QRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRDQSYKKKEESGTSDGSIMKMKGK 62
Query: 126 ETEEGESSHRRSGNEVDRSKYKRLEMPILSGENPDSWVYRAEHYFEIHELDDLEKIKVAI 185
EE + + +++DRSKYK+LEMP+ GENP+SWVYRAEH+FEI+ L + EK+KVA+
Sbjct: 63 -MEETDVTGEIHTHQIDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKVAV 122
Query: 186 IAFAPDGVDWFRWTHNRRPILTWEALKERLFSLFRPAQEGMLLSQLLRIQQEGTYEEYLK 245
++F D VDW+RW+HNRR + +WE LK R+F FR + L ++L+RIQQEG+Y +Y+K
Sbjct: 123 VSFGQDEVDWYRWSHNRRKVESWEDLKTRMFEFFRDTGQRSLGARLIRIQQEGSYSDYVK 182
Query: 246 KFGTYSAPLPNTV-------------PA----------------------VSDWNVALKL 305
KF YSAPLP+ PA V+D N+ALKL
Sbjct: 183 KFVNYSAPLPHMAESVLRDAFLTGLEPALQAEVMSRHPQTLEDCMMAAQLVNDRNLALKL 242
Query: 306 AAEEMG-----------------SDRGLAQQGGVNPK----------ERGNPRQRRIRKK 365
A EMG +D+G+ ++ K ++G P +R+
Sbjct: 243 AQAEMGIIEPKRSESAGNKVQWNNDKGMMRKNEFQMKQITIPLKGSYQKGEPPVKRLSDA 302
Query: 366 K-RSHVANYLMLR-------------RRKRIYEVELLNEE---------------VLEMK 425
+ R+ + L R + KR + +LNEE +E+
Sbjct: 303 EFRARLDKGLCFRCNEKYSHGHRCKIKEKRELMLFILNEEESTEEGEGSEAPNTGPVEIN 362
Query: 426 VLEVDNNVEVALRSILGFSATRTMKLKGLAAGKEVVVM------------RLVDELQLPL 469
LE + R+I + TMKL+G+ GKEV+V+ LV E ++P+
Sbjct: 363 QLEEPEETMIEYRAITSLTTKGTMKLRGIVKGKEVIVLIDSGATHNFIHHELVTERKIPI 422
BLAST of ClCG06G010650 vs. NCBI nr
Match:
KAA0059481.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 248.4 bits (633), Expect = 1.4e-61
Identity = 166/508 (32.68%), Postives = 262/508 (51.57%), Query Frame = 0
Query: 66 KREIEEKIENNVQGIFELKEWMIEMSKTIDLVAANVQNLMNLREEGSVLQSRTLPTSKEK 125
+R++EE++E + + LKE M+EM K++D +A +++ ++E S ++ K K
Sbjct: 3 QRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRDQSYKKKEESGTSDGSIMKMKGK 62
Query: 126 ETEEGESSHRRSGNEVDRSKYKRLEMPILSGENPDSWVYRAEHYFEIHELDDLEKIKVAI 185
EE + + +++DRSKYK+LEMP+ GENP+SWVYRAEH+FEI+ L + EK+KVA+
Sbjct: 63 -MEETDVTGEIHTHQIDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKVAV 122
Query: 186 IAFAPDGVDWFRWTHNRRPILTWEALKERLFSLFRPAQEGMLLSQLLRIQQEGTYEEYLK 245
++F D VDW+RW+HNRR + +WE LK R+F FR + L ++L+RIQQEG+Y +Y+K
Sbjct: 123 VSFGQDEVDWYRWSHNRRKVESWEDLKTRMFEFFRDTGQRSLGARLIRIQQEGSYSDYVK 182
Query: 246 KFGTYSAPLPNTV-------------PA----------------------VSDWNVALKL 305
KF YSAPLP+ PA V+D N+ALKL
Sbjct: 183 KFVNYSAPLPHMAESVLRDAFLTGLEPALQAEVMSRHPQTLEDCMMAAQLVNDRNLALKL 242
Query: 306 AAEEMG-----------------SDRGLAQQGGVNPK----------ERGNPRQRRIRKK 365
A EMG +D+G+ ++ K ++G P +R+
Sbjct: 243 AQAEMGIIEPKRSESAGNKVQWNNDKGMMRKNEFQMKQITIPLKGSYQKGEPPVKRLSDA 302
Query: 366 K-RSHVANYLMLR-------------RRKRIYEVELLNEE---------------VLEMK 425
+ R+ + L R + KR + +LNEE +E+
Sbjct: 303 EFRARLDKGLCFRCNEKYSHGHRCKIKEKRELMLFILNEEESIEEGEGSEAPNTGPVEIN 362
Query: 426 VLEVDNNVEVALRSILGFSATRTMKLKGLAAGKEVVVM------------RLVDELQLPL 469
LE + R+I + TMKL+G+ GKEV+V+ LV E ++P+
Sbjct: 363 QLEEPEETMIEYRAITSLTTKGTMKLRGIVKGKEVIVLIDSGATHNFIHHELVTERKIPI 422
BLAST of ClCG06G010650 vs. ExPASy TrEMBL
Match:
A0A5A7V4F5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00530 PE=4 SV=1)
HSP 1 Score: 256.9 bits (655), Expect = 1.9e-64
Identity = 173/508 (34.06%), Postives = 261/508 (51.38%), Query Frame = 0
Query: 66 KREIEEKIENNVQGIFELKEWMIEMSKTIDLVAANVQ--NLMNLREEGSVLQSRTLPTSK 125
+R++EEK++ + I LKE M+EM K ++ +A ++ + +EE ++ K
Sbjct: 3 QRQMEEKVDGTEKEILSLKEMMLEMKKAVERLADEMKESHSYKKKEESGTTSDGSVMKLK 62
Query: 126 EKETEEGESSHRRSGNEVDRSKYKRLEMPILSGENPDSWVYRAEHYFEIHELDDLEKIKV 185
K +E E +G DRSKYK+LEMP+ GENP+SWVYRAEH+FEI+ L + EK+KV
Sbjct: 63 GK-LDETELITETNGAVTDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKV 122
Query: 186 AIIAFAPDGVDWFRWTHNRRPILTWEALKERLFSLFRPAQEGMLLSQLLRIQQEGTYEEY 245
A+++F D VDW+RW+HNR+ + +WE LK R+F FR + + L ++L+RIQQ+G+Y +Y
Sbjct: 123 AVVSFGQDEVDWYRWSHNRKKVESWEDLKSRMFEFFRDSGQKSLGARLIRIQQDGSYNDY 182
Query: 246 LKKFGTYSAPLP-----------------------------------NTVPAVSDWNVAL 305
+KKF TYS+PLP V+D N+AL
Sbjct: 183 VKKFVTYSSPLPYMAESVLVDASVTGLEPSLQAEVISRHPQTLEEYMREAQLVNDRNLAL 242
Query: 306 KLAAEEMGS---DRGLAQQGGVNPK-ERGNPRQRRIRKKK-------------------- 365
KL E+G D G + +G + E+ PR+ + K+
Sbjct: 243 KLTKMELGMTEWDEGGSSKGRKTEEIEKAMPRKTDFQMKQIPIKGHFKKGEPPVKRLSDA 302
Query: 366 --RSHVANYLMLR-------------RRKRIYEVELLNEE---------------VLEMK 425
R+ + L R + KR ++NEE +E+K
Sbjct: 303 EFRARLDRGLCFRCNDKYSPGHRCKTKEKRELMFFIMNEEDETEEVNSKDEMAERTVELK 362
Query: 426 VLEVDNNVEVALRSILGFSATRTMKLKGLAAGKEVVVM------------RLVDELQLPL 469
LE+ + E+ L+++ S+ TMKLKG KE+VV+ L ELQ+ L
Sbjct: 363 NLELTEDTEIELKTMTNLSSKGTMKLKGWVRQKEIVVLINSGATHNFIHQALAKELQMGL 422
BLAST of ClCG06G010650 vs. ExPASy TrEMBL
Match:
A0A5A7UT21 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001910 PE=4 SV=1)
HSP 1 Score: 250.4 bits (638), Expect = 1.8e-62
Identity = 165/508 (32.48%), Postives = 263/508 (51.77%), Query Frame = 0
Query: 66 KREIEEKIENNVQGIFELKEWMIEMSKTIDLVAANVQNLMNLREEGSVLQSRTLPTSKEK 125
+R++EE++E + + LKE M+EM K++D +A +++ ++E S R++ K K
Sbjct: 3 QRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRDQSYKKKEESGTSDRSIMKMKGK 62
Query: 126 ETEEGESSHRRSGNEVDRSKYKRLEMPILSGENPDSWVYRAEHYFEIHELDDLEKIKVAI 185
EE + + +++DRSKYK+LEMP+ GENP+SWVYRAEH+FEI+ L + EK+KVA+
Sbjct: 63 -MEETDVTGEIHTHQIDRSKYKKLEMPMFQGENPESWVYRAEHFFEINNLPEAEKVKVAV 122
Query: 186 IAFAPDGVDWFRWTHNRRPILTWEALKERLFSLFRPAQEGMLLSQLLRIQQEGTYEEYLK 245
++F D VDW+RW+HNRR + +WE LK R+F FR + L ++L+RIQQEG+Y +Y+K
Sbjct: 123 VSFGQDEVDWYRWSHNRRKVESWEDLKTRMFEFFRDTGQKSLGARLIRIQQEGSYSDYVK 182
Query: 246 KFGTYSAPLPNTV-------------PA----------------------VSDWNVALKL 305
KF YSAPLP+ PA V+D N+ALKL
Sbjct: 183 KFVNYSAPLPHMAESVLRDAFLTGLEPALQAEVMSRHPQTLEECMMAAQLVNDRNLALKL 242
Query: 306 AAEEMG-----------------SDRGLAQQGGVNPK----------ERGNPRQRRIRKK 365
A EMG +D+G+ ++ K ++G P +R+
Sbjct: 243 AQAEMGIMEPKRSETAGNKVPWNNDKGIMRKNEFQMKQITIPLKGSYQKGEPPVKRLSDA 302
Query: 366 K-RSHVANYLMLR-------------RRKRIYEVELLNEE---------------VLEMK 425
+ R+ + L R + KR + +LNEE +E+
Sbjct: 303 EFRARLDKGLCFRCSEKYSHGHRCKIKEKRELMLFILNEEESTEEGESSKAPNTGPVEIN 362
Query: 426 VLEVDNNVEVALRSILGFSATRTMKLKGLAAGKEVVVM------------RLVDELQLPL 469
LE + R+I + TMKL+G+ GKE++V+ L E ++P+
Sbjct: 363 QLEGPEETMIEYRAITSLTTKGTMKLRGIVKGKEIIVLIDSGATHNFIHHELATERKIPI 422
BLAST of ClCG06G010650 vs. ExPASy TrEMBL
Match:
A0A5D3E325 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00690 PE=4 SV=1)
HSP 1 Score: 248.4 bits (633), Expect = 6.9e-62
Identity = 166/508 (32.68%), Postives = 262/508 (51.57%), Query Frame = 0
Query: 66 KREIEEKIENNVQGIFELKEWMIEMSKTIDLVAANVQNLMNLREEGSVLQSRTLPTSKEK 125
+R++EE++E + + LKE M+EM K++D +A +++ ++E S ++ K K
Sbjct: 3 QRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRDQSYKKKEESGTSDGSIMKMKGK 62
Query: 126 ETEEGESSHRRSGNEVDRSKYKRLEMPILSGENPDSWVYRAEHYFEIHELDDLEKIKVAI 185
EE + + +++DRSKYK+LEMP+ GENP+SWVYRAEH+FEI+ L + EK+KVA+
Sbjct: 63 -MEETDVTGEIHTHQIDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKVAV 122
Query: 186 IAFAPDGVDWFRWTHNRRPILTWEALKERLFSLFRPAQEGMLLSQLLRIQQEGTYEEYLK 245
++F D VDW+RW+HNRR + +WE LK R+F FR + L ++L+RIQQEG+Y +Y+K
Sbjct: 123 VSFGQDEVDWYRWSHNRRKVESWEDLKTRMFEFFRDTGQRSLGARLIRIQQEGSYSDYVK 182
Query: 246 KFGTYSAPLPNTV-------------PA----------------------VSDWNVALKL 305
KF YSAPLP+ PA V+D N+ALKL
Sbjct: 183 KFVNYSAPLPHMAESVLRDAFLTGLEPALQAEVMSRHPQTLEDCMMAAQLVNDRNLALKL 242
Query: 306 AAEEMG-----------------SDRGLAQQGGVNPK----------ERGNPRQRRIRKK 365
A EMG +D+G+ ++ K ++G P +R+
Sbjct: 243 AQAEMGIIEPKRSESAGNKVQWNNDKGMMRKNEFQMKQITIPLKGSYQKGEPPVKRLSDA 302
Query: 366 K-RSHVANYLMLR-------------RRKRIYEVELLNEE---------------VLEMK 425
+ R+ + L R + KR + +LNEE +E+
Sbjct: 303 EFRARLDKGLCFRCNEKYSHGHRCKIKEKRELMLFILNEEESTEEGEGSEAPNTGPVEIN 362
Query: 426 VLEVDNNVEVALRSILGFSATRTMKLKGLAAGKEVVVM------------RLVDELQLPL 469
LE + R+I + TMKL+G+ GKEV+V+ LV E ++P+
Sbjct: 363 QLEEPEETMIEYRAITSLTTKGTMKLRGIVKGKEVIVLIDSGATHNFIHHELVTERKIPI 422
BLAST of ClCG06G010650 vs. ExPASy TrEMBL
Match:
A0A5A7UYM1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002110 PE=4 SV=1)
HSP 1 Score: 248.4 bits (633), Expect = 6.9e-62
Identity = 175/509 (34.38%), Postives = 261/509 (51.28%), Query Frame = 0
Query: 66 KREIEEKIENNVQGIFELKEWMIEMSKTIDLVAANV-QNLMNLREEGSVLQSRTLPTSKE 125
+R++EE++E + + +KE ++EM K ++ +A + +N ++E S S +
Sbjct: 3 QRQMEERVEGTEKELLSMKEMLLEMKKAVERLADEMKENHSYKKKEESGTTSDGSVMKLK 62
Query: 126 KETEEGESSHRRSGNEVDRSKYKRLEMPILSGENPDSWVYRAEHYFEIHELDDLEKIKVA 185
+ +E E +G DRSKYK+LEMP+ GENP+SWVYRAEH+FEI+ L + EK+KVA
Sbjct: 63 GKMDETEPITEINGTVTDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLSESEKVKVA 122
Query: 186 IIAFAPDGVDWFRWTHNRRPILTWEALKERLFSLFRPAQEGMLLSQLLRIQQEGTYEEYL 245
+++F D VDW+RW+HNR+ + +WE LK R+F FR + + L ++L+RIQQEG+Y EY+
Sbjct: 123 VVSFGQDEVDWYRWSHNRKKVESWEDLKSRMFEFFRDSGQKSLGARLIRIQQEGSYNEYV 182
Query: 246 KKFGTYSAPLP-----------------------------------NTVPAVSDWNVALK 305
KKF TYSAPLP V+D N ALK
Sbjct: 183 KKFVTYSAPLPYMAESVLVDAFVTGLEPSLQAEVISRHPQTLEDCMREAQLVNDRNYALK 242
Query: 306 LAAEEM-------GSDRGLAQQGGVN---PK-----------------ERGNPRQRRIRK 365
L+ E+ G + + G V+ P+ ++G P +R+
Sbjct: 243 LSKMELGMTEWEVGGSSKVKKLGDVDKPPPRKTDFQMKQITIPIKGNFKKGEPPVKRLSD 302
Query: 366 KK-RSHVANYLMLR-------------RRKRIYEVELLN---------------EEVLEM 425
+ R+ + L R + KR ++N EE +E+
Sbjct: 303 AEFRARLDRGLCFRCNDKYSPGHRCKTKEKRELMFFIMNEEEEDEEGDSQEEVIEETVEL 362
Query: 426 KVLEVDNNVEVALRSILGFSATRTMKLKGLAAGKEVVVM------------RLVDELQLP 469
K LE+ + + L+++ S+ TMKLKG KEVVV+ L EL+L
Sbjct: 363 KTLELTDETAIELKTMTRISSKGTMKLKGWIRQKEVVVLIDSGATHNFIHHSLAAELELG 422
BLAST of ClCG06G010650 vs. ExPASy TrEMBL
Match:
A0A5A7V194 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G002120 PE=4 SV=1)
HSP 1 Score: 248.4 bits (633), Expect = 6.9e-62
Identity = 166/508 (32.68%), Postives = 262/508 (51.57%), Query Frame = 0
Query: 66 KREIEEKIENNVQGIFELKEWMIEMSKTIDLVAANVQNLMNLREEGSVLQSRTLPTSKEK 125
+R++EE++E + + LKE M+EM K++D +A +++ ++E S ++ K K
Sbjct: 3 QRQMEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRDQSYKKKEESGTSDGSIMKMKGK 62
Query: 126 ETEEGESSHRRSGNEVDRSKYKRLEMPILSGENPDSWVYRAEHYFEIHELDDLEKIKVAI 185
EE + + +++DRSKYK+LEMP+ GENP+SWVYRAEH+FEI+ L + EK+KVA+
Sbjct: 63 -MEETDVTGEIHTHQIDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPEAEKVKVAV 122
Query: 186 IAFAPDGVDWFRWTHNRRPILTWEALKERLFSLFRPAQEGMLLSQLLRIQQEGTYEEYLK 245
++F D VDW+RW+HNRR + +WE LK R+F FR + L ++L+RIQQEG+Y +Y+K
Sbjct: 123 VSFGQDEVDWYRWSHNRRKVESWEDLKTRMFEFFRDTGQRSLGARLIRIQQEGSYSDYVK 182
Query: 246 KFGTYSAPLPNTV-------------PA----------------------VSDWNVALKL 305
KF YSAPLP+ PA V+D N+ALKL
Sbjct: 183 KFVNYSAPLPHMAESVLRDAFLTGLEPALQAEVMSRHPQTLEDCMMAAQLVNDRNLALKL 242
Query: 306 AAEEMG-----------------SDRGLAQQGGVNPK----------ERGNPRQRRIRKK 365
A EMG +D+G+ ++ K ++G P +R+
Sbjct: 243 AQAEMGIIEPKRSESAGNKVQWNNDKGMMRKNEFQMKQITIPLKGSYQKGEPPVKRLSDA 302
Query: 366 K-RSHVANYLMLR-------------RRKRIYEVELLNEE---------------VLEMK 425
+ R+ + L R + KR + +LNEE +E+
Sbjct: 303 EFRARLDKGLCFRCNEKYSHGHRCKIKEKRELMLFILNEEESIEEGEGSEAPNTGPVEIN 362
Query: 426 VLEVDNNVEVALRSILGFSATRTMKLKGLAAGKEVVVM------------RLVDELQLPL 469
LE + R+I + TMKL+G+ GKEV+V+ LV E ++P+
Sbjct: 363 QLEEPEETMIEYRAITSLTTKGTMKLRGIVKGKEVIVLIDSGATHNFIHHELVTERKIPI 422
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0061366.1 | 4.0e-64 | 34.06 | retrotransposon protein [Cucumis melo var. makuwa] >TYK14721.1 retrotransposon p... | [more] |
| KAA0056659.1 | 3.7e-62 | 32.48 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0061073.1 | 1.4e-61 | 34.38 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK21035.1 | 1.4e-61 | 32.68 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30523.1 Ty3/gyp... | [more] |
| KAA0059481.1 | 1.4e-61 | 32.68 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7V4F5 | 1.9e-64 | 34.06 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7UT21 | 1.8e-62 | 32.48 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5D3E325 | 6.9e-62 | 32.68 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7UYM1 | 6.9e-62 | 34.38 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5A7V194 | 6.9e-62 | 32.68 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
