ClCG06G010130 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G010130
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DUF4283 domain-containing protein
Location	CG_Chr06: 21056529 .. 21057416 (+)
RNA-Seq Expression	ClCG06G010130
Synteny	ClCG06G010130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTTAAAAGTTGCTGTGTTGATAACTATTATTTTTGCATTTGACAAGTAGGTCGAACTCAAGCAATCAGTGCTGGGAAAGATAACTTAAGTTTCCTTTTCAGAAAAGAAAAAAAAAAAAGATAACTATTATTTTTGTATTTGACAGTAGATGATGTTTTATTATTAGAAGACTTGAGCGGCCATCAGAAGATTCCTATCTCAGTTTCAATGCTCAAATGGTTAGATGAAGTGAAGAAATTGTTGATTTTTCCATCACATTCCTTTTTACAAAAACAAAACAGGAAAATTGGGAACAGGTGTCTTGCGCCTATCCAAATTCAAATTGGAGAAAGGATGGTTTCTTGAATGTGCCTCATGGCCTGCCTCAGGAGGAAGAAAGAATCTTCATATTGCTTTAGGACTTGACAAGAAGGGTTGGCTGTCTTTCAGTTCTATGCCAATAATATTGTAATTTGTCTACTGGATAACATCAGGAAAGTAAAAGTCAAGGACCGTTTAGAAAGTTTTAGATCAGATTCTATGGGGAAGAGATCTTTTGCAGAAGTACTCAGACAATCTCCAACCCTCAGCGCTCCAAAGCCAGAGCTAGCCCCCGTCAGTAATACATCCTTTTGGGTCAAGAAGGAAACTGAAGTATTGAACTTGAACTTAAACTCCTTGCTTATGGTTTCAAGATTGTTCGCTCATTATTCTTGGAAGGAAGTTAAGAATTCTTTGGAAAAAAATTTCCAGACACAAGTCTCAACCAACCCGTTTATGGAGGTTAAAGTTATTTTAAAAGTGGAATTTAGTTCATCCTCTTATGTGAATGTTGGTAAATGGATCCTTTTAGGGAGGTTCCATCTGACATTGTATCCTTGGTCAAATAGTTCCTCATTCTAG

mRNA sequence

ATGGAAGTTAAAAGAAAATTGGGAACAGGTGTCTTGCGCCTATCCAAATTCAAATTGGAGAAAGGATGGTTTCTTGAATGTGCCTCATGGCCTGCCTCAGGAGGAAGAAAGAATCTTCATATTGCTTTAGGACTTGACAAGAAGGGTTGGCTGTCTTTCAGTTCTATGCCAATAATATTGAAAGTAAAAGTCAAGGACCGTTTAGAAAGTTTTAGATCAGATTCTATGGGGAAGAGATCTTTTGCAGAAGTACTCAGACAATCTCCAACCCTCAGCGCTCCAAAGCCAGAGCTAGCCCCCGTCAGTAATACATCCTTTTGGGTCAAGAAGGAAACTGAAGTATTGAACTTGAACTTAAACTCCTTGCTTATGGTTTCAAGATTGTTCGCTCATTATTCTTGGAAGGAAGTTAAGAATTCTTTGGAAAAAAATTTCCAGACACAAGTCTCAACCAACCCGTTTATGGAGGTTAAAGTTATTTTAAAAGTGGAATTTAGTTCATCCTCTTATGTGAATGTTGGTAAATGGATCCTTTTAGGGAGGTTCCATCTGACATTGTATCCTTGGTCAAATAGTTCCTCATTCTAG

Coding sequence (CDS)

ATGGAAGTTAAAAGAAAATTGGGAACAGGTGTCTTGCGCCTATCCAAATTCAAATTGGAGAAAGGATGGTTTCTTGAATGTGCCTCATGGCCTGCCTCAGGAGGAAGAAAGAATCTTCATATTGCTTTAGGACTTGACAAGAAGGGTTGGCTGTCTTTCAGTTCTATGCCAATAATATTGAAAGTAAAAGTCAAGGACCGTTTAGAAAGTTTTAGATCAGATTCTATGGGGAAGAGATCTTTTGCAGAAGTACTCAGACAATCTCCAACCCTCAGCGCTCCAAAGCCAGAGCTAGCCCCCGTCAGTAATACATCCTTTTGGGTCAAGAAGGAAACTGAAGTATTGAACTTGAACTTAAACTCCTTGCTTATGGTTTCAAGATTGTTCGCTCATTATTCTTGGAAGGAAGTTAAGAATTCTTTGGAAAAAAATTTCCAGACACAAGTCTCAACCAACCCGTTTATGGAGGTTAAAGTTATTTTAAAAGTGGAATTTAGTTCATCCTCTTATGTGAATGTTGGTAAATGGATCCTTTTAGGGAGGTTCCATCTGACATTGTATCCTTGGTCAAATAGTTCCTCATTCTAG

Protein sequence

MEVKRKLGTGVLRLSKFKLEKGWFLECASWPASGGRKNLHIALGLDKKGWLSFSSMPIILKVKVKDRLESFRSDSMGKRSFAEVLRQSPTLSAPKPELAPVSNTSFWVKKETEVLNLNLNSLLMVSRLFAHYSWKEVKNSLEKNFQTQVSTNPFMEVKVILKVEFSSSSYVNVGKWILLGRFHLTLYPWSNSSSF

Homology

[Close]

BLAST of ClCG06G010130 vs. NCBI nr
Match: KAA0063414.1 (uncharacterized protein E6C27_scaffold508G00510 [Cucumis melo var. makuwa] >TYK11672.1 uncharacterized protein E5676_scaffold828G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-05
Identity = 40/119 (33.61%), Postives = 60/119 (50.42%), Query Frame = 0


Query: 22  GWFLECASWPASGGRKNLHIALGLDKKGWLSFSSMPIILKVKVKDRLESFRSDSMGKRSF 81
           GW L C  WP SGGR  LH+ +G +++GW+SF++M       +KD L    S    +   
Sbjct: 14  GWVLRCTVWPESGGRFYLHLPVGPNQQGWISFANM-------IKDFLSVSTSKEDIRMKG 73

Query: 82  AEVLRQSPTLSAPKPEL-APVSNTSFWVKKETEVLNLNLNSLLMVSRLFAHYSWKEVKN 140
            ++L + P  S    E  A    +S WV K +EVL  +  S+L V +   +  W  +KN
Sbjct: 74  VDML-ELPAFSQSMLEFPAFKGKSSSWVHKNSEVLREDFKSILDVVK--GYGGWISIKN 122

[Close]

BLAST of ClCG06G010130 vs. NCBI nr
Match: XP_038884899.1 (uncharacterized protein LOC120075514 [Benincasa hispida])

HSP 1 Score: 58.2 bits (139), Expect = 9.5e-05
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 3   VKRKLGTGVLRLSKFKLEKGWFLECASWPASGGRKNLH-IALGLDKKGWLSFSSM 57
           +K K+    +RL+KF+ ++ WF+E A WP +GGR+N+H I  G +K GW  F  M
Sbjct: 61  LKEKVDQNFMRLAKFRAKENWFVEFAVWPITGGRRNIHNIPFGNEKAGWQDFKEM 115

[Close]

BLAST of ClCG06G010130 vs. ExPASy TrEMBL
Match: A0A5A7V878 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00460 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.2e-06
Identity = 40/119 (33.61%), Postives = 60/119 (50.42%), Query Frame = 0


Query: 22  GWFLECASWPASGGRKNLHIALGLDKKGWLSFSSMPIILKVKVKDRLESFRSDSMGKRSF 81
           GW L C  WP SGGR  LH+ +G +++GW+SF++M       +KD L    S    +   
Sbjct: 14  GWVLRCTVWPESGGRFYLHLPVGPNQQGWISFANM-------IKDFLSVSTSKEDIRMKG 73

Query: 82  AEVLRQSPTLSAPKPEL-APVSNTSFWVKKETEVLNLNLNSLLMVSRLFAHYSWKEVKN 140
            ++L + P  S    E  A    +S WV K +EVL  +  S+L V +   +  W  +KN
Sbjct: 74  VDML-ELPAFSQSMLEFPAFKGKSSSWVHKNSEVLREDFKSILDVVK--GYGGWISIKN 122

The following BLAST results are available for this feature:

BLAST of ClCG06G010130 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063414.1	1.9e-05	33.61	uncharacterized protein E6C27_scaffold508G00510 [Cucumis melo var. makuwa] >TYK1...	[more]
XP_038884899.1	9.5e-05	43.64	uncharacterized protein LOC120075514 [Benincasa hispida]	[more]

BLAST of ClCG06G010130 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG06G010130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V878	9.2e-06	33.61	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of ClCG06G010130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G010130.1	ClCG06G010130.1	mRNA