ClCG06G009940 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G009940
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	CG_Chr06: 20038465 .. 20038929 (-)
RNA-Seq Expression	ClCG06G009940
Synteny	ClCG06G009940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTCAAATGGACTCCAAGGTATTTTGTATGGTATGGTAACATCCCCTCCAGAATTTCTTGATCAGCAACAAATTCAACCGAATCTTGGTTTTCAGGTATGGGAGAGGTATAATAGATTTATTATGTGCTGGATTTCCTCTTCTCTGTCTGAAGAAAAGATGGCTGAAATTGTGAGTTTAGAAATGACTACGGCTATTTGGGAACCTTTGAAATGTACCTACGATTCTAATACTATTGCGAAGATTATGGCTTTAAAAACTCAGTTGCAGCATATTAGAAAGGATGGATTATCTGTAAGTCAATATTTGTCTCAAATTAAAGAAGTGACTGATAAATTTTCCGCTATAGGAGAGCCTATATCATATCGTGACCATCTTGCTTATATTTTAGATGGATTACGAAGTAAATACAATGCCTTTGTCATATCTATACAAAATAGATTAGATAGACCTTCTCTTTAA

mRNA sequence

ATGCTCTCAAATGGACTCCAAGGTATTTTGTATGGTATGGTAACATCCCCTCCAGAATTTCTTGATCAGCAACAAATTCAACCGAATCTTGGTTTTCAGGTATGGGAGAGGTATAATAGATTTATTATGTGCTGGATTTCCTCTTCTCTGTCTGAAGAAAAGATGGCTGAAATTGTGAGTTTAGAAATGACTACGGCTATTTGGGAACCTTTGAAATGTACCTACGATTCTAATACTATTGCGAAGATTATGGCTTTAAAAACTCAGTTGCAGCATATTAGAAAGGATGGATTATCTGTAAGTCAATATTTGTCTCAAATTAAAGAAGTGACTGATAAATTTTCCGCTATAGGAGAGCCTATATCATATCGTGACCATCTTGCTTATATTTTAGATGGATTACGAAGTAAATACAATGCCTTTGTCATATCTATACAAAATAGATTAGATAGACCTTCTCTTTAA

Coding sequence (CDS)

ATGCTCTCAAATGGACTCCAAGGTATTTTGTATGGTATGGTAACATCCCCTCCAGAATTTCTTGATCAGCAACAAATTCAACCGAATCTTGGTTTTCAGGTATGGGAGAGGTATAATAGATTTATTATGTGCTGGATTTCCTCTTCTCTGTCTGAAGAAAAGATGGCTGAAATTGTGAGTTTAGAAATGACTACGGCTATTTGGGAACCTTTGAAATGTACCTACGATTCTAATACTATTGCGAAGATTATGGCTTTAAAAACTCAGTTGCAGCATATTAGAAAGGATGGATTATCTGTAAGTCAATATTTGTCTCAAATTAAAGAAGTGACTGATAAATTTTCCGCTATAGGAGAGCCTATATCATATCGTGACCATCTTGCTTATATTTTAGATGGATTACGAAGTAAATACAATGCCTTTGTCATATCTATACAAAATAGATTAGATAGACCTTCTCTTTAA

Protein sequence

MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL

Homology

[Close]

BLAST of ClCG06G009940 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 213.0 bits (541), Expect = 1.8e-51
Identity = 99/154 (64.29%), Postives = 122/154 (79.22%), Query Frame = 0


Query: 1   MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
           +++NGL+G L G +  PP+FLD  Q+QPN  +  WERYNR +MCWI SSLSEEKM E+VS
Sbjct: 50  VIANGLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVS 109

Query: 61  LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
           LE T  IW  L   YDS T A+IM LKT+LQ++RKDG SVSQYL++IKE+ DKF+A+GEP
Sbjct: 110 LETTHDIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEP 169

Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL 155
           +SYRDHLA++LDGL S+YNAFV SI NR D PSL
Sbjct: 170 LSYRDHLAHVLDGLGSEYNAFVTSIHNRADSPSL 203

[Close]

BLAST of ClCG06G009940 vs. NCBI nr
Match: GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-28
Identity = 64/154 (41.56%), Postives = 96/154 (62.34%), Query Frame = 0


Query: 1   MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
           +++NGL+  L G    PP FLD QQ Q N  F  W+RYNR +M WI +S++E  + +IV 
Sbjct: 71  VIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVG 130

Query: 61  LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
               + IWE L+  Y + + A +  L+T LQ I+K+GL+   Y+ + + + +  ++IGEP
Sbjct: 131 YTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEP 190

Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL 155
           ++Y DHL Y L GL   YN FV SIQ++  RPS+
Sbjct: 191 VTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSI 224

[Close]

BLAST of ClCG06G009940 vs. NCBI nr
Match: GFZ12741.1 (UBX domain-containing protein [Actinidia rufa])

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-28
Identity = 64/154 (41.56%), Postives = 96/154 (62.34%), Query Frame = 0


Query: 1   MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
           +++NGL+  L G    PP FLD QQ Q N  F  W+RYNR +M WI +S++E  + +IV 
Sbjct: 71  VIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVG 130

Query: 61  LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
               + IWE L+  Y + + A +  L+T LQ I+K+GL+   Y+ + + + +  ++IGEP
Sbjct: 131 YTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEP 190

Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL 155
           ++Y DHL Y L GL   YN FV SIQ++  RPS+
Sbjct: 191 VTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSV 224

[Close]

BLAST of ClCG06G009940 vs. NCBI nr
Match: RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 136.0 bits (341), Expect = 2.8e-28
Identity = 69/154 (44.81%), Postives = 100/154 (64.94%), Query Frame = 0


Query: 1   MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
           +++NGL+  +    +SPP++LD    Q N  F  W+R N+ +M WI SSL+   + +IV 
Sbjct: 60  IIANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIVE 119

Query: 61  LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
                 IW  L   Y+S +IA +M+L +QLQ I+K  + +S+YLS++K V D+F+ IGEP
Sbjct: 120 YSTARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGEP 179

Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL 155
           +SYRD L  IL+GL  +Y+ FV SI NR DRPSL
Sbjct: 180 LSYRDKLTRILEGLPEEYDNFVTSIHNRSDRPSL 213

[Close]

BLAST of ClCG06G009940 vs. NCBI nr
Match: PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale])

HSP 1 Score: 129.0 bits (323), Expect = 3.5e-26
Identity = 61/150 (40.67%), Postives = 93/150 (62.00%), Query Frame = 0


Query: 1   MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
           +++NGL+  + G    PP F D  +   N  +  W+R+NR IM WI +SL++  M +IV 
Sbjct: 72  IIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQIVG 131

Query: 61  LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
                 IWE L   Y S+++AKI  L+ +LQ++RKDGL+  +Y+ + K + +  +A+GEP
Sbjct: 132 YASAFEIWEALNQIYTSSSLAKITELRAKLQNLRKDGLTAIEYIQKHKNICNTLAAVGEP 191

Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLD 151
           +S +DHL Y+  GL  +YNAFV SI  R D
Sbjct: 192 VSCKDHLLYLFGGLDREYNAFVTSITKRPD 221

[Close]

BLAST of ClCG06G009940 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 8.8e-52
Identity = 99/154 (64.29%), Postives = 122/154 (79.22%), Query Frame = 0


Query: 1   MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
           +++NGL+G L G +  PP+FLD  Q+QPN  +  WERYNR +MCWI SSLSEEKM E+VS
Sbjct: 50  VIANGLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVS 109

Query: 61  LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
           LE T  IW  L   YDS T A+IM LKT+LQ++RKDG SVSQYL++IKE+ DKF+A+GEP
Sbjct: 110 LETTHDIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEP 169

Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL 155
           +SYRDHLA++LDGL S+YNAFV SI NR D PSL
Sbjct: 170 LSYRDHLAHVLDGLGSEYNAFVTSIHNRADSPSL 203

[Close]

BLAST of ClCG06G009940 vs. ExPASy TrEMBL
Match: A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 8.0e-29
Identity = 64/154 (41.56%), Postives = 96/154 (62.34%), Query Frame = 0


Query: 1   MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
           +++NGL+  L G    PP FLD QQ Q N  F  W+RYNR +M WI +S++E  + +IV 
Sbjct: 71  VIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVG 130

Query: 61  LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
               + IWE L+  Y + + A +  L+T LQ I+K+GL+   Y+ + + + +  ++IGEP
Sbjct: 131 YTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEP 190

Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL 155
           ++Y DHL Y L GL   YN FV SIQ++  RPS+
Sbjct: 191 VTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSI 224

[Close]

BLAST of ClCG06G009940 vs. ExPASy TrEMBL
Match: A0A7J0GPN0 (UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.0e-28
Identity = 64/154 (41.56%), Postives = 96/154 (62.34%), Query Frame = 0


Query: 1   MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
           +++NGL+  L G    PP FLD QQ Q N  F  W+RYNR +M WI +S++E  + +IV 
Sbjct: 71  VIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVG 130

Query: 61  LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
               + IWE L+  Y + + A +  L+T LQ I+K+GL+   Y+ + + + +  ++IGEP
Sbjct: 131 YTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEP 190

Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL 155
           ++Y DHL Y L GL   YN FV SIQ++  RPS+
Sbjct: 191 VTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSV 224

[Close]

BLAST of ClCG06G009940 vs. ExPASy TrEMBL
Match: A0A438GC62 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_210 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 69/154 (44.81%), Postives = 100/154 (64.94%), Query Frame = 0


Query: 1   MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
           +++NGL+  +    +SPP++LD    Q N  F  W+R N+ +M WI SSL+   + +IV 
Sbjct: 60  IIANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIVE 119

Query: 61  LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
                 IW  L   Y+S +IA +M+L +QLQ I+K  + +S+YLS++K V D+F+ IGEP
Sbjct: 120 YSTARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGEP 179

Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL 155
           +SYRD L  IL+GL  +Y+ FV SI NR DRPSL
Sbjct: 180 LSYRDKLTRILEGLPEEYDNFVTSIHNRSDRPSL 213

[Close]

BLAST of ClCG06G009940 vs. ExPASy TrEMBL
Match: A0A2P5BGF8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.7e-26
Identity = 61/150 (40.67%), Postives = 93/150 (62.00%), Query Frame = 0


Query: 1   MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVS 60
           +++NGL+  + G    PP F D  +   N  +  W+R+NR IM WI +SL++  M +IV 
Sbjct: 72  IIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQIVG 131

Query: 61  LEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEP 120
                 IWE L   Y S+++AKI  L+ +LQ++RKDGL+  +Y+ + K + +  +A+GEP
Sbjct: 132 YASAFEIWEALNQIYTSSSLAKITELRAKLQNLRKDGLTAIEYIQKHKNICNTLAAVGEP 191

Query: 121 ISYRDHLAYILDGLRSKYNAFVISIQNRLD 151
           +S +DHL Y+  GL  +YNAFV SI  R D
Sbjct: 192 VSCKDHLLYLFGGLDREYNAFVTSITKRPD 221

[Close]

BLAST of ClCG06G009940 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 4.5e-08
Identity = 29/120 (24.17%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 35  WERYNRFIMCWISSSLSEEKMAEIVSLEMTTA-IWEPLKCTYDSNTIAKIMALKTQLQHI 94
           W+  +  +  WI  ++++  +  I+ +  T   +W  L+  +  N  A+ +  + +L+  
Sbjct: 67  WKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTT 126

Query: 95  RKDGLSVSQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPS 154
             D LSV +Y  ++K ++D  + +  PIS R  + ++L+GL  KY+  +  I+++   PS
Sbjct: 127 TIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPS 186

[Close]

BLAST of ClCG06G009940 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 3.6e-05
Identity = 25/120 (20.83%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 35  WERYNRFIMCWISSSLSEEK-MAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHI 94
           W++ +  +   +  +L+ ++     V+   +  IW  +K  + +N  A+ + L ++L+  
Sbjct: 65  WQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTK 124

Query: 95  RKDGLSVSQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPS 154
               + V+ Y  ++K++ D    +  P++ R+ + Y+L+GL  K++  +  I++R   PS
Sbjct: 125 DIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPS 184

The following BLAST results are available for this feature:

BLAST of ClCG06G009940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155181.1	1.8e-51	64.29	uncharacterized protein LOC111022315 [Momordica charantia]	[more]
GFY85402.1	1.7e-28	41.56	hypothetical protein Acr_04g0001400 [Actinidia rufa]	[more]
GFZ12741.1	2.2e-28	41.56	UBX domain-containing protein [Actinidia rufa]	[more]
RVW69807.1	2.8e-28	44.81	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
PON47862.1	3.5e-26	40.67	hypothetical protein TorRG33x02_321990 [Trema orientale]	[more]

BLAST of ClCG06G009940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG06G009940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQX7	8.8e-52	64.29	uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A7J0EGI5	8.0e-29	41.56	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1	[more]
A0A7J0GPN0	1.0e-28	41.56	UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4...	[more]
A0A438GC62	1.4e-28	44.81	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A2P5BGF8	1.7e-26	40.67	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV...	[more]

BLAST of ClCG06G009940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48050.1	4.5e-08	24.17	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]
AT1G34070.1	3.6e-05	20.83	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 36..153 e-value: 4.3E-18 score: 65.4
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 3..150
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 3..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G009940.1	ClCG06G009940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding