ClCG06G009890 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G009890
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Reverse transcriptase, RNA-dependent DNA polymerase
Location	CG_Chr06: 19784273 .. 19784680 (+)
RNA-Seq Expression	ClCG06G009890
Synteny	ClCG06G009890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATAACTCCTCCGATCCTAACCAAATTACCAACAACACAGAAGGTGAAGTTACTAAGATGACCACTCCCTCTTCAGCACAAAGAAACTCGACCACTAGCAGTTATTTGGCTCCGGTGATTCAAAAATATCAAGTGAGATCTGGCACTTGTCTAGTCGGCAACCCCTCTTTCACAAATCTACTGAATCGAGTGACCTCCGTCAAGCTTGACAGAGGCAATTTTCTTCTCTGGCAGAACATAGTTCTCCCTATTTCAAGAAGCTATAAGCTGGAAGTCACCTTACTGGAAAAACACCAGAATCGAAGCACTAAATCATTATCCCACAAAGTGAAGAAGAACCTCAAGGACTTGTTCTTCCTAATCCTGAGCACAACATTTGGTTGGCAGCTGATCAACTCCTAG

mRNA sequence

ATGGCTGATAACTCCTCCGATCCTAACCAAATTACCAACAACACAGAAGGTGAAGTTACTAAGATGACCACTCCCTCTTCAGCACAAAGAAACTCGACCACTAGCAGTTATTTGGCTCCGGTGATTCAAAAATATCAAGTGAGATCTGGCACTTGTCTAGTCGGCAACCCCTCTTTCACAAATCTACTGAATCGAGTGACCTCCGTCAAGCTTGACAGAGGCAATTTTCTTCTCTGGCAGAACATAGTTCTCCCTATTTCAAGAAGCTATAAGCTGGAAGTCACCTTACTGGAAAAACACCAGAATCGAAGCACTAAATCATTATCCCACAAAGTGAAGAAGAACCTCAAGGACTTGTTCTTCCTAATCCTGAGCACAACATTTGGTTGGCAGCTGATCAACTCCTAG

Coding sequence (CDS)

ATGGCTGATAACTCCTCCGATCCTAACCAAATTACCAACAACACAGAAGGTGAAGTTACTAAGATGACCACTCCCTCTTCAGCACAAAGAAACTCGACCACTAGCAGTTATTTGGCTCCGGTGATTCAAAAATATCAAGTGAGATCTGGCACTTGTCTAGTCGGCAACCCCTCTTTCACAAATCTACTGAATCGAGTGACCTCCGTCAAGCTTGACAGAGGCAATTTTCTTCTCTGGCAGAACATAGTTCTCCCTATTTCAAGAAGCTATAAGCTGGAAGTCACCTTACTGGAAAAACACCAGAATCGAAGCACTAAATCATTATCCCACAAAGTGAAGAAGAACCTCAAGGACTTGTTCTTCCTAATCCTGAGCACAACATTTGGTTGGCAGCTGATCAACTCCTAG

Protein sequence

MADNSSDPNQITNNTEGEVTKMTTPSSAQRNSTTSSYLAPVIQKYQVRSGTCLVGNPSFTNLLNRVTSVKLDRGNFLLWQNIVLPISRSYKLEVTLLEKHQNRSTKSLSHKVKKNLKDLFFLILSTTFGWQLINS

Homology

[Close]

BLAST of ClCG06G009890 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-06
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 33 TTSSYLAPVIQKYQVRSGTCLVGNPSFTNLLNRVTSVKLDRGNFLLWQNIVLPISRSYKL 92
          T S+   P++    V SG     +P    LLN++TS+K+DRGNFLLWQN+ LPI RSYKL
Sbjct: 2  TISNLPTPIVTPPAVVSGAVFT-SPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKL 60

[Close]

BLAST of ClCG06G009890 vs. NCBI nr
Match: XP_031745012.1 (uncharacterized protein LOC116405217 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-05
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 47  VRSGTCLVGNPSFTNLLNRVTSVKLDRGNFLLWQNIVLPISRSYKLEVTLLEKHQ 102
           + S T    NP    +LN++ SVKLDRGN+LLWQ + LPI +SYKL+  L E++Q
Sbjct: 8   IGSSTTNFSNPPLNQILNQLASVKLDRGNYLLWQTLALPILKSYKLQGHLTEENQ 62

[Close]

BLAST of ClCG06G009890 vs. NCBI nr
Match: XP_016901223.1 (PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 5.6e-04
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 47 VRSGTCLVGNPSFTNLLNRVTSVKLDRGNFLLWQNIVLPISRSYKLE 94
          V S T    NP    LLN+++SVKLDR N+LLW+ + LPI +SYK E
Sbjct: 8  VESSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFE 54

[Close]

BLAST of ClCG06G009890 vs. NCBI nr
Match: KAA0060627.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 5.6e-04
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 56 NPSFTNLLNRVTSVKLDRGNFLLWQNIVLPISRSYKLE 94
          NP    LLN+++SVKLDRGN+LLW+ + LPI +SYK E
Sbjct: 17 NPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFE 54

[Close]

BLAST of ClCG06G009890 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 5.6e-04
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 56 NPSFTNLLNRVTSVKLDRGNFLLWQNIVLPISRSYKLE 94
          NP    LLN+++SVKLDRGN+LLW+ + LPI +SYK E
Sbjct: 17 NPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFE 54

[Close]

BLAST of ClCG06G009890 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 33 TTSSYLAPVIQKYQVRSGTCLVGNPSFTNLLNRVTSVKLDRGNFLLWQNIVLPISRSYKL 92
          T S+   P++    V SG     +P    LLN++TS+K+DRGNFLLWQN+ LPI RSYKL
Sbjct: 2  TISNLPTPIVTPPAVVSGAVFT-SPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKL 60

[Close]

BLAST of ClCG06G009890 vs. ExPASy TrEMBL
Match: A0A5D3BVJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00450 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.7e-04
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 56 NPSFTNLLNRVTSVKLDRGNFLLWQNIVLPISRSYKLE 94
          NP    LLN+++SVKLDRGN+LLW+ + LPI +SYK E
Sbjct: 17 NPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFE 54

[Close]

BLAST of ClCG06G009890 vs. ExPASy TrEMBL
Match: A0A5A7V1E0 (Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005070 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.7e-04
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 56 NPSFTNLLNRVTSVKLDRGNFLLWQNIVLPISRSYKLE 94
          NP    LLN+++SVKLDRGN+LLW+ + LPI +SYK E
Sbjct: 17 NPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFE 54

[Close]

BLAST of ClCG06G009890 vs. ExPASy TrEMBL
Match: A0A1S4DZ26 (uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.7e-04
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 47 VRSGTCLVGNPSFTNLLNRVTSVKLDRGNFLLWQNIVLPISRSYKLE 94
          V S T    NP    LLN+++SVKLDR N+LLW+ + LPI +SYK E
Sbjct: 8  VESSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFE 54

[Close]

BLAST of ClCG06G009890 vs. ExPASy TrEMBL
Match: A0A5A7U2Z6 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00960 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.8e-04
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 56 NPSFTNLLNRVTSVKLDRGNFLLWQNIVLPISRSYKLE 94
          NP    +LN++T+VKLDRGN+LLW+ + LPI + YKL+
Sbjct: 19 NPPLNQILNQLTTVKLDRGNYLLWETLALPILKGYKLD 56

The following BLAST results are available for this feature:

BLAST of ClCG06G009890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151683.1	2.7e-06	51.67	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
XP_031745012.1	1.3e-05	50.91	uncharacterized protein LOC116405217 [Cucumis sativus]	[more]
XP_016901223.1	5.6e-04	53.19	PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo]	[more]
KAA0060627.1	5.6e-04	60.53	Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]	[more]
TYK02246.1	5.6e-04	60.53	uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]	[more]

BLAST of ClCG06G009890 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG06G009890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCW4	1.3e-06	51.67	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5D3BVJ1	2.7e-04	60.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V1E0	2.7e-04	60.53	Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa ...	[more]
A0A1S4DZ26	2.7e-04	53.19	uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=...	[more]
A0A5A7U2Z6	7.8e-04	55.26	UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of ClCG06G009890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G009890.1	ClCG06G009890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity