ClCG06G009825 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G009825
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Transposon Tf2-1 polyprotein isoform X1
Location	CG_Chr06: 19446309 .. 19446824 (-)
RNA-Seq Expression	ClCG06G009825
Synteny	ClCG06G009825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAATGCTATAGAGGTGGAAAGTTGTAATGTTCATGGTTCGCCTTACTGTATTTGGTTTGAAGAAGGTTCTTTCCATTTTGAGGACGTGGAAGCCAAAGAAACTCTACCGTTGTCAGACTCCCATTTGAGATGGTTTATCAAATCCATATTAGAACTGCTCCAAGGCCCTCCCAATAGGTACTTCTTCAAAAATGATTGGGACGATTATGGCGTGACAAGAATTTCAAAATTTATAGCTGACTCAGGATGCTATCTAAGATGCGTAATATGGCCAGCAATGGGGGGTCGATTCTTCATTCATATCCATTCGGGAGTCTCTCAACAGGGGTGGAAATCCTTTCCGAAAATGTTGAATGAGTTTTTGATAAAATATGAATACACTCAATGGAAAAAGCAACAACTCCCTAAAACAAAACCCATCAATCAGAGACCGACAGGGGTCGAAATACTATCCGTTCAGGTTCAGGGCCCAAGCTATGCAGATAAGGTGAAGTTAAAAGATCAACGCTGA

mRNA sequence

ATGACAAATGCTATAGAGGTGGAAAGTTGTAATGTTCATGGTTCGCCTTACTGTATTTGGTTTGAAGAAGGTTCTTTCCATTTTGAGGACGTGGAAGCCAAAGAAACTCTACCGTTGTCAGACTCCCATTTGAGATGGTTTATCAAATCCATATTAGAACTGCTCCAAGGCCCTCCCAATAGGTACTTCTTCAAAAATGATTGGGACGATTATGGCGTGACAAGAATTTCAAAATTTATAGCTGACTCAGGATGCTATCTAAGATGCGTAATATGGCCAGCAATGGGGGGTCGATTCTTCATTCATATCCATTCGGGAGTCTCTCAACAGGGGTGGAAATCCTTTCCGAAAATGTTGAATGAGTTTTTGATAAAATATGAATACACTCAATGGAAAAAGCAACAACTCCCTAAAACAAAACCCATCAATCAGAGACCGACAGGGGTCGAAATACTATCCGTTCAGGTTCAGGGCCCAAGCTATGCAGATAAGGTGAAGTTAAAAGATCAACGCTGA

Coding sequence (CDS)

ATGACAAATGCTATAGAGGTGGAAAGTTGTAATGTTCATGGTTCGCCTTACTGTATTTGGTTTGAAGAAGGTTCTTTCCATTTTGAGGACGTGGAAGCCAAAGAAACTCTACCGTTGTCAGACTCCCATTTGAGATGGTTTATCAAATCCATATTAGAACTGCTCCAAGGCCCTCCCAATAGGTACTTCTTCAAAAATGATTGGGACGATTATGGCGTGACAAGAATTTCAAAATTTATAGCTGACTCAGGATGCTATCTAAGATGCGTAATATGGCCAGCAATGGGGGGTCGATTCTTCATTCATATCCATTCGGGAGTCTCTCAACAGGGGTGGAAATCCTTTCCGAAAATGTTGAATGAGTTTTTGATAAAATATGAATACACTCAATGGAAAAAGCAACAACTCCCTAAAACAAAACCCATCAATCAGAGACCGACAGGGGTCGAAATACTATCCGTTCAGGTTCAGGGCCCAAGCTATGCAGATAAGGTGAAGTTAAAAGATCAACGCTGA

Protein sequence

MTNAIEVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSDSHLRWFIKSILELLQGPPNRYFFKNDWDDYGVTRISKFIADSGCYLRCVIWPAMGGRFFIHIHSGVSQQGWKSFPKMLNEFLIKYEYTQWKKQQLPKTKPINQRPTGVEILSVQVQGPSYADKVKLKDQR

Homology

[Close]

BLAST of ClCG06G009825 vs. NCBI nr
Match: KAA0036035.1 (putative 3,4-dihydroxy-2-butanone kinase isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 56/129 (43.41%), Postives = 71/129 (55.04%), Query Frame = 0


Query: 3   NAIEVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSDSHLRWFIKSILELLQGPPNRY 62
           +++E+  C +  S YCIW EE S   EDVEA  ++  S S LRW    I  LL+   +  
Sbjct: 41  HSMEIVGCKIDQSHYCIWKEEDSCFIEDVEACRSISTSISQLRWTKSVISNLLRTLVDNN 100

Query: 63  FFKNDWDDYGVTRISKFIADSGCYLRCVIWPAMGGRFFIHIHSGVSQQGWKSFPKMLNEF 122
           F K    D G  RISKF A SG  L C  WP  GG F I   SG +QQGW S  +ML +F
Sbjct: 101 FKKFGDIDGGRLRISKFQAKSGWVLSCDHWPYSGGLFNIRDCSGKNQQGWMSLCRMLEKF 160

Query: 123 LIKYEYTQW 132
           + K +Y +W
Sbjct: 161 VEKMDYVRW 169

[Close]

BLAST of ClCG06G009825 vs. NCBI nr
Match: TYJ98834.1 (putative 3,4-dihydroxy-2-butanone kinase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 56/129 (43.41%), Postives = 71/129 (55.04%), Query Frame = 0


Query: 3   NAIEVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSDSHLRWFIKSILELLQGPPNRY 62
           +++E+  C +  S YCIW EE S   EDVEA  ++  S S LRW    I  LL+   +  
Sbjct: 215 HSMEIVGCKIDQSHYCIWKEEDSCFIEDVEACRSISTSISQLRWTKSVISNLLRTLVDNN 274

Query: 63  FFKNDWDDYGVTRISKFIADSGCYLRCVIWPAMGGRFFIHIHSGVSQQGWKSFPKMLNEF 122
           F K    D G  RISKF A SG  L C  WP  GG F I   SG +QQGW S  +ML +F
Sbjct: 275 FKKFGDIDGGRLRISKFQAKSGWVLSCDHWPYSGGLFNIRDCSGKNQQGWMSLCRMLEKF 334

Query: 123 LIKYEYTQW 132
           + K +Y +W
Sbjct: 335 VEKMDYVRW 343

[Close]

BLAST of ClCG06G009825 vs. NCBI nr
Match: TYJ98411.1 (nucleotide binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 3.6e-16
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 6   EVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSDSHLRWFIKSILELLQGPPNRYFFK 65
           +VE C V   PYCIWF++  FH EDVEA++ L LSD+  RWF+K I E L+GP N +  +
Sbjct: 261 KVERCKVVNVPYCIWFDKDYFHIEDVEARKILSLSDTQFRWFLKEISEFLRGPENGFLLR 320

Query: 66  NDWDDYGVTRISKF 80
           N +DD+G TR+ KF
Sbjct: 321 NGFDDFGSTRLLKF 334

[Close]

BLAST of ClCG06G009825 vs. NCBI nr
Match: TYK02777.1 (Transposon TX1 uncharacterized [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-11
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 9  SCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSDSHLRWFIKSILELLQGPPNRYFFKNDW 68
          SC +    YCIW E+G FH EDV+ ++ + LS + L WF  SI  L++ P  ++F K+  
Sbjct: 4  SCKIVDPFYCIWLEKGQFHIEDVDFQKIISLSKTQLEWFTNSIAVLVKEPAWKFFSKSGN 63

Query: 69 DDYGVTRISKFIADSGCYL 88
          DD G+TR+SKF   SG +L
Sbjct: 64 DDAGITRLSKFQTPSGWFL 82

[Close]

BLAST of ClCG06G009825 vs. NCBI nr
Match: KGN51638.2 (hypothetical protein Csa_008823 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-10
Identity = 34/94 (36.17%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 5  IEVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSDSHLRWFIKSILELLQGPPNRYFF 64
          +EV S  +  + +C+W E   FH E V+A+ ++ +S++HL  F+ +I +L++G  +R+F 
Sbjct: 1  MEVASSKILHTHFCVWLENDQFHVEGVDAQLSVVVSEAHLNGFLAAIAKLVRGSKDRFFL 60

Query: 65 KNDWDDYGVTRISKFIADSGCYLRCVIWPAMGGR 99
          K    D G  ++SKF +D G  L C  WP  G R
Sbjct: 61 KLGEFDRGRMKLSKFRSDIGWVLCCDFWPTSGHR 94

[Close]

BLAST of ClCG06G009825 vs. ExPASy TrEMBL
Match: A0A5D3BIE8 (Putative 3,4-dihydroxy-2-butanone kinase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00250 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.4e-19
Identity = 56/129 (43.41%), Postives = 71/129 (55.04%), Query Frame = 0


Query: 3   NAIEVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSDSHLRWFIKSILELLQGPPNRY 62
           +++E+  C +  S YCIW EE S   EDVEA  ++  S S LRW    I  LL+   +  
Sbjct: 215 HSMEIVGCKIDQSHYCIWKEEDSCFIEDVEACRSISTSISQLRWTKSVISNLLRTLVDNN 274

Query: 63  FFKNDWDDYGVTRISKFIADSGCYLRCVIWPAMGGRFFIHIHSGVSQQGWKSFPKMLNEF 122
           F K    D G  RISKF A SG  L C  WP  GG F I   SG +QQGW S  +ML +F
Sbjct: 275 FKKFGDIDGGRLRISKFQAKSGWVLSCDHWPYSGGLFNIRDCSGKNQQGWMSLCRMLEKF 334

Query: 123 LIKYEYTQW 132
           + K +Y +W
Sbjct: 335 VEKMDYVRW 343

[Close]

BLAST of ClCG06G009825 vs. ExPASy TrEMBL
Match: A0A5A7T3H6 (Putative 3,4-dihydroxy-2-butanone kinase isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00260 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.4e-19
Identity = 56/129 (43.41%), Postives = 71/129 (55.04%), Query Frame = 0


Query: 3   NAIEVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSDSHLRWFIKSILELLQGPPNRY 62
           +++E+  C +  S YCIW EE S   EDVEA  ++  S S LRW    I  LL+   +  
Sbjct: 41  HSMEIVGCKIDQSHYCIWKEEDSCFIEDVEACRSISTSISQLRWTKSVISNLLRTLVDNN 100

Query: 63  FFKNDWDDYGVTRISKFIADSGCYLRCVIWPAMGGRFFIHIHSGVSQQGWKSFPKMLNEF 122
           F K    D G  RISKF A SG  L C  WP  GG F I   SG +QQGW S  +ML +F
Sbjct: 101 FKKFGDIDGGRLRISKFQAKSGWVLSCDHWPYSGGLFNIRDCSGKNQQGWMSLCRMLEKF 160

Query: 123 LIKYEYTQW 132
           + K +Y +W
Sbjct: 161 VEKMDYVRW 169

[Close]

BLAST of ClCG06G009825 vs. ExPASy TrEMBL
Match: A0A5D3BIA6 (Nucleotide binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00070 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-16
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 6   EVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSDSHLRWFIKSILELLQGPPNRYFFK 65
           +VE C V   PYCIWF++  FH EDVEA++ L LSD+  RWF+K I E L+GP N +  +
Sbjct: 261 KVERCKVVNVPYCIWFDKDYFHIEDVEARKILSLSDTQFRWFLKEISEFLRGPENGFLLR 320

Query: 66  NDWDDYGVTRISKF 80
           N +DD+G TR+ KF
Sbjct: 321 NGFDDFGSTRLLKF 334

[Close]

BLAST of ClCG06G009825 vs. ExPASy TrEMBL
Match: A0A5D3BTI0 (Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00360 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.8e-12
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 9  SCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSDSHLRWFIKSILELLQGPPNRYFFKNDW 68
          SC +    YCIW E+G FH EDV+ ++ + LS + L WF  SI  L++ P  ++F K+  
Sbjct: 4  SCKIVDPFYCIWLEKGQFHIEDVDFQKIISLSKTQLEWFTNSIAVLVKEPAWKFFSKSGN 63

Query: 69 DDYGVTRISKFIADSGCYL 88
          DD G+TR+SKF   SG +L
Sbjct: 64 DDAGITRLSKFQTPSGWFL 82

[Close]

BLAST of ClCG06G009825 vs. ExPASy TrEMBL
Match: A0A5A7VEL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G001380 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.9e-11
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 5  IEVESCNVHGSPYCIWFEEGSFHFEDVEAKETLPLSDSHLRWFIKSILELLQGPPNRYFF 64
          +EV S  +  S YCIW ++  FH EDV+ ++ L +S + LRWFI ++L+L+Q   + +F 
Sbjct: 1  MEVRSRKIAKSIYCIWSDKVHFHIEDVDFRKNLRVSKNQLRWFIAAMLDLVQDEEHCFFL 60

Query: 65 KNDWDDYGVTRISKFIADSGCYLRCV 91
          KN  D  G TR++KF       +RCV
Sbjct: 61 KNGRDTDGTTRLTKFRRSPEWIVRCV 86

The following BLAST results are available for this feature:

BLAST of ClCG06G009825 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036035.1	1.3e-18	43.41	putative 3,4-dihydroxy-2-butanone kinase isoform X2 [Cucumis melo var. makuwa]	[more]
TYJ98834.1	1.3e-18	43.41	putative 3,4-dihydroxy-2-butanone kinase isoform X1 [Cucumis melo var. makuwa]	[more]
TYJ98411.1	3.6e-16	52.70	nucleotide binding protein [Cucumis melo var. makuwa]	[more]
TYK02777.1	1.2e-11	44.30	Transposon TX1 uncharacterized [Cucumis melo var. makuwa]	[more]
KGN51638.2	1.0e-10	36.17	hypothetical protein Csa_008823 [Cucumis sativus]	[more]

BLAST of ClCG06G009825 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG06G009825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BIE8	6.4e-19	43.41	Putative 3,4-dihydroxy-2-butanone kinase isoform X1 OS=Cucumis melo var. makuwa ...	[more]
A0A5A7T3H6	6.4e-19	43.41	Putative 3,4-dihydroxy-2-butanone kinase isoform X2 OS=Cucumis melo var. makuwa ...	[more]
A0A5D3BIA6	1.7e-16	52.70	Nucleotide binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5D3BTI0	5.8e-12	44.30	Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7VEL7	4.9e-11	40.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of ClCG06G009825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G009825.1	ClCG06G009825.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006520	cellular amino acid metabolic process
biological_process	GO:0016053	organic acid biosynthetic process
biological_process	GO:1901566	organonitrogen compound biosynthetic process
cellular_component	GO:0110165	cellular anatomical entity