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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. GCTCGACGAGCGGGGTGGTGCGACCCTGTTGAGAAGCGAGCGACCTAAATTCAAGAAAGTGGAAATGCTTGTATTCTTAGTTGTGGATCTAGACTTGTGCTTATATAGCACAAAATGATATTTTGAGATACATGATTTAACCGATGATGAAAAAATGATGGTGTCTGTCATCAGTTTTGAAGGAGAAGCTATAGACTGATATCATTGGGTGATCAGAAGAGATCTGTTTGAGGATTAGGGTGCCCTCCAGCGATGATTGTTGGCGTGTTTCTTCCCATCCTATGAAGGCAATTTGTGTGCTTGATTTTTAACCATACGACAAGAGGGATCATTTAAGATTTTTAGCGCAAATTTGAAAGATTAGTAGCACCCATACCTCATTTGTCAGATGAAGTTTTGGAAAGCACGTTTCTTAATAGATTATACTCGATAATTTGGGTGGAAATACTATGTTTTGAGCCTTTGGGCCTTGATCAACCGATGAAGACAACC mRNA sequence GCTCGACGAGCGGGGTGGTGCGACCCTGTTGAGAAGCGAGCGACCTAAATTCAAGAAAGTGGAAATGCTTGTATTCTTAGTTGTGGATCTAGACTTGGTGCCCTCCAGCGATGATTGTTGGCGTGTTTCTTCCCATCCTATGAAGGCAATTTGTCGCAAATTTGAAAGATTAGTAGCACCCATACCTCATTTGTCAGATGAAGTTTTGGAAAGCACGTTTCTTAATAGATTATACTCGATAATTTGGGTGGAAATACTATGTTTTGAGCCTTTGGGCCTTGATCAACCGATGAAGACAACC Coding sequence (CDS) ATGCTTGTATTCTTAGTTGTGGATCTAGACTTGGTGCCCTCCAGCGATGATTGTTGGCGTGTTTCTTCCCATCCTATGAAGGCAATTTGTCGCAAATTTGAAAGATTAGTAGCACCCATACCTCATTTGTCAGATGAAGTTTTGGAAAGCACGTTTCTTAATAGATTATACTCGATAATTTGGGTGGAAATACTATGTTTTGAGCCTTTGGGCCTTGATCAACCGATGAAGACAACC Protein sequence MLVFLVVDLDLVPSSDDCWRVSSHPMKAICRKFERLVAPIPHLSDEVLESTFLNRLYSIIWVEILCFEPLGLDQPMKTT
Homology
BLAST of ClCG06G009760 vs. NCBI nr
Match: KAA0031882.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 57.0 bits (136), Expect = 8.5e-05 Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 0
Query: 32 KFERLVAPIPHLSDEVLESTFLNRLYSIIWVEILCFEPLGLDQPMK 78
+FE L AP+ HLSDEVLESTFLN L I E+L +EP+GL Q M+
Sbjct: 149 RFEALSAPLSHLSDEVLESTFLNGLDPEIKAEVLSYEPVGLGQIMR 194
BLAST of ClCG06G009760 vs. NCBI nr
Match: KAA0053502.1 (ty3-gypsy retroelement transposase [Cucumis melo var. makuwa] >TYK19104.1 ty3-gypsy retroelement transposase [Cucumis melo var. makuwa]) HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04 Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 0
Query: 30 CRKFERLVAPIPHLSDEVLESTFLNRLYSIIWVEILCFEPLGLDQPMK 78
C +F++LVAP+P L EVLE TF+N L + ++ C EP+GL Q MK
Sbjct: 35 CNRFDKLVAPVPFLHKEVLEETFMNGLSPWLKAKVECLEPIGLTQMMK 82
BLAST of ClCG06G009760 vs. ExPASy TrEMBL
Match: A0A5A7SLB5 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46346G00030 PE=4 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 4.1e-05 Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 0
Query: 32 KFERLVAPIPHLSDEVLESTFLNRLYSIIWVEILCFEPLGLDQPMK 78
+FE L AP+ HLSDEVLESTFLN L I E+L +EP+GL Q M+
Sbjct: 149 RFEALSAPLSHLSDEVLESTFLNGLDPEIKAEVLSYEPVGLGQIMR 194
BLAST of ClCG06G009760 vs. ExPASy TrEMBL
Match: A0A5A7UCK4 (Ty3-gypsy retroelement transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00180 PE=4 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 9.2e-05 Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 0
Query: 30 CRKFERLVAPIPHLSDEVLESTFLNRLYSIIWVEILCFEPLGLDQPMK 78
C +F++LVAP+P L EVLE TF+N L + ++ C EP+GL Q MK
Sbjct: 35 CNRFDKLVAPVPFLHKEVLEETFMNGLSPWLKAKVECLEPIGLTQMMK 82
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0031882.1 | 8.5e-05 | 60.87 | gypsy/ty3 element polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0053502.1 | 1.9e-04 | 50.00 | ty3-gypsy retroelement transposase [Cucumis melo var. makuwa] >TYK19104.1 ty3-gy... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SLB5 | 4.1e-05 | 60.87 | Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
| A0A5A7UCK4 | 9.2e-05 | 50.00 | Ty3-gypsy retroelement transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E56... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
|
