ClCG06G009410 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G009410
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	rubisco accumulation factor 1, chloroplastic
Location	CG_Chr06: 15769133 .. 15776507 (-)
RNA-Seq Expression	ClCG06G009410
Synteny	ClCG06G009410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGTGAAATGTTATTAATTATAGTGATAATAGGTTTGAATGCTAGTTTGTTTAGTGTTTTTATGATTTTATTGTGTAAAGTGTCTATAATGTTTGTATTTTTATTTTCAATTTAATCTCGATTTTTCTAAAAGAAGATTTCACTTTTTTTTATTATTTTTATTTTTTAAAATTTAGTCCCTCATGTGGTGAAGGTTAAAATTGACCATAAATTTAGAACAAATTGCAAATACCATAACATGTATGGTGGTAGTTGTAATTTGCGCATATTTATGTTGTCACACCCCATCCCGAACTACCCTCCCGTGGCCCGAGACAGAGCGTGAGGACAGCAGTCATCGACTTCCCAGTCGACTCCCACTGTCAAACTTACCTTATTTCCCATTTAACCACCTTCCTAGGATGGTGATACCATTAACTCTTGACAAACCTCGACTTCGACCGGCAACAGGAACTGTCATGCTACCTGAAAAATGGAAAACATATGAAAGGATGAGCTAACAGCTCAGTGAGTAACAGTTTTTGAAAATATCTTACTTTAACTATAAAATTGGTCATAATATAAACATTGTCAACTACGCATATAAAATATCGATTCAAGTCATATTAAAACATGCTCAAATGCCATTGTTAAATCATGCATGCTTATTTCAGAGAAAAATACTAAAAAATTTCATTCATTTCAAATCATTCTCCTTAGTTGAGGCAGAGCGGTGCTCTACACTTCTCAACATCGAAAACATTTCATATCTTTTCCTTAATTGAGGCGAAGCCGAGCTCTACGCTACTCAACGTCGATTATCCTTAGCTGTGTGGAGTAATCTCAACACATCAGCGTCATATATTCCTCTATATGCACATAGGTATTATAATCCGAGCTGCCCACATGCCTTCTCCAAGTCCTTGAGCATTGGGGTCCCATTTCCATATCTAGGTTACCCATTTGGCTTCTTCGAGTCCCTCAGCGTTGGGTACCTTTTCTATATTCCGGCTACCCTTTGGCCTTTTCCAAGTCCTTGAGCTTTGGGTGCCATTTCAAGATTTTATAAAAATGCACAATATGTTTTGGAAACATCATATCATAAATTCATAAGTTAACCGTTTCAAAATCTTTCATAAAATCATATAATACCAACCAGCATGCTTTCAATAAACTCAATTTCAAATCTTTAATATCAAACAGCATGCTTTTCAATAAGCTTATTTCCAAATCTTTCATGAAATCATATAACATCTATCAGCATGCTTTTCAATAAAACCATAAAAATCATATAATATCATACAACATGCTTTTCAATTAACTCATTTCAAACAACCAACATGCTCAAATACTTTTTAAATATAAACGCATGCTATACACGTTGAAAACTCATGAATGCTTAATCAAATTCCAAAACCATTGCTATTGATCACAGAGAACGCATTCATATTTTGAAAAATGTTAGTGTTACTCACTTAATACTTGCTCAAAGGTAGTTCCTTTTACTTCCTTCTAATTCTCTTTCCCGAGCTTCTTGGACGCAGCGTTCTGAAGTCTGAAACGCAAGACAACTTATATTCCTCTGTCAGCTCGGTTGGACGCAACTCTGCCCTTGAACGCAAGGTTAGTTACTTGAACGCAATATGCAGCCTTTCAACTAACTCTTTTGGCTTCACCCCTTGGAAGCACAGATCTCCTTGAACGCAAGGTCTACCTTGAAAGTAGAGTCTATCTTTGGACGCAGTGTTCACCTTGAACGTCGAGTTTATCTTGAACGCAAAACTACTTGTTGAACGCAAGGTATCTAGGTTGTTAAGAACACCTCATCTCTTAACCGCAGACTTCACCACGAACACAAGGATTTTCCCTTTTCTGCCTTCTCTCTACTTTCTCTCCAGAACTCAGACTTTATGATCATCCCCCGCTCTTTTCCTTCAAGGTCCTATTTATAGTTTTGGGATAAATCCAACTTCTCCTCTCTTTTTTGCCACTTGTTTGCCACCTGTCACGCTGCATGACACATCCGACATGCAACCCAACACTTACTCCTTATAATGTGTTAAGTTTAAATGAAACCACATAACCTTTATAAACTTACCTTATGCGTTTGACTTGCTCTGAGATACGAACTATGCATACAACTTAGTGCCCGTATGCGTCCATCTACTACTCCTTTTAAGGTTTAGCTTCTTTATTCTCTTTCTTCCTCACAGCCTTCCTACCTTTGACCAGGTTTCTCCCTCGCACATCAACATGTGTCTGTGCCTTAATTGCATACTATCATGCGTCCATTACTTCTTTCCTTATATCCATATCTTAGCTACAAGCCCTTCTCTTGAGTAATAAATATCCGACTATGCTTGTTATTCTGTTAACTAAAATCATCTCAAGGTCTTCCTTCATGCATTTGTACTTAATGCTTTTATCTCTACTTTCTTATGCGTCCATGACCTTTCTTCCATTCTTAAGGATTTCTTGATTGCCCCTCCATGCGTTCTTAAGTTGTAATCCAAGGTTATGCTTCCAACCTCTTCCTTATGCTTAGCCATTTTCTCAATCGATAAATCTAGTAGACGTCCATCTCCAGCCTCCTTTTAGGCTTACTTCTCAACCTTCTATCTCATCCAATTATTCAACAAAATTTTCCTTGATGGAAGTCATGCATTTACATTAAATTATAATAGCATCTTTCCTTGATTCCACCTTATACGTTTTATCCTTCTTTTCGAGGCTTATATTTCCTTTCAAAGCATCACTATTCAACTTTAGTCCTCTTACTCATACGTCCTACTTAAGCCAAGCTTACATCTCCTTCCTTAATTACCTTCTATACGTTTCACTTCTTTCCCTTCGAGCTCTCTCGGGTTACTTCCTACGCGTTCACCTCTTTCCCCCGAGCTCTCGGGTTTCCTTACAATACTTCAACACTTACCCATTTTCATTTCCACAATGGTTACCTTTATCATGTGTTTCCTTAGTCTTGACCATGCGTCCAACATGGTCTCTTACTTACCAAATATGCGTCCAACTCAATCTAACTCTTTCCATCACTTAGTGAGATTTTCTTTCTTTTCCTTAGATCATACTTCCAAGCTTAGAAACATAGTTGAGTTCTTCTAGCCTGGTTATTCTACTTAAAAGACTTCTTAACTCCAAGAATTACTTTAATTCCAAAATTCAGAAATCACTCAGCGCAACCTTCCAATCCAATCCTTCTAATCCAAACTTATCTACGACTTATACTTACCCAATACTTAAAAGCACAAACCTCTCTTTTCCTTCAAGTTCAACGCATACTCATTCCTACTTTTAGCAATATTTCTCGGCCAACTCCACAACCTTGTGATCCAATACCACCTCTCTTTTCTTACAGAATTTCTTTACAAGCTCTTAAATGCATCGGTTTTAAAAGTAGAGTGGGACAATTCCATTCACCTTAGAAAAATTTCATCCTCGAAATTTAGACAGTATAATAAGGTTATGAAAGTGAAAAAAAAATACTTCTTTATTTATATGCGTTGTCCGTACAAATCTTACTTAAAAAATACATTCAAAAAAAAAAAAAAAAAGAAAAGAACACTTCTTCCCATTCTTTCCTTCTTCCTTCCTTCTGCTTAGTTACTTGGGCCTCCCTTGTTCTGTGGACAATCTTTGCAATAGTGTCCAAGCTGATCACACATATAACAAACATCCTCTCTTCCTTCTTGATCTCCTCTATGTCTCCGTCCACAGTTGTTGCAGAGATTTTCTTTTTCCAACTCTTTGGGTGGATCGTAAAAATCCGTGAACGCTTTGCACTAATTTCGTTGGTGTCCTTTCATCCTACATGCAAAACACCTATCTGTTCCTTTTAAGCATTCTCCCGTATGGCTTTTCCTACATTCCAGGCACCTAATCCATGAACATTTTCGTTTCCCCTTGCTTTCCTTACCTGACATAATGAGTACACGAAAATAAATTAATTTTGTGGCATCTACAACCCAAGTAAATTCAGTTCTACAAGTAATTTTGTCTATCTTTGATACTTCCTTAATATTACTTAGATTCCTGTTTGAATACATTATTTTCCTCTGATGGGATCCAATACATGAATATAGAAAACAATTCATAAGTAATACTTCCTTTTTCGTAGAATTTTCACAAGTTTCAACTGATTATTGTCTAGCATCATGCGTTTGTTCCATAGGCTTCCTTGAACGCATATTCCGCCAACACGTACTTGGTTACAAACCTGAGCGCATAGTTTGGTTGCCAACTTGGACGCGCCGCACCATGCGTCTAAACTATTACACCCGCAAATTTCGCCAATTCGACCAACGCAACCTTCTACCGATCTCAACCAACGCATATCTACTGGTTCAACAATCTCATCAACGCATAGCCTCGAACATTTACTATTGCTCAACTTTTTGGACGCATGCCTCAACAATCCCACACTTCAACCTTTATGCTTAGACTCGGCTACGCAATTTCTTCCCTATTTTCAGCCATTACCCATGCTCACTCTCCTAACGCATGGACATTTCAAGCTCAAAGGTTCTCGGTCATCACTTTCAATTACCCGACTACTTGCTTGCCTTTTTTCCAAAGTTGAGAGTAGAGCTTTACAACTTACCAATTCCTTACAAGAATTTCATCCTAAAAATTCTGTAGGTTGTTAGTCTCTCAAGAACAATTGTGGATACTGTTTTATCATTTGCTCATTGGGCTTGGCTTCCCAAATAGCTTCTTCTACACCATGATTTTTCCACAAATCTTAGACTAACGAAATCAACTTAGTTCTTAGTACTTACTCCTTCTCATCTAACACTTGAATCGATTCCTCCTCATAACTCAAATCTTCTCTTACCTCAATCGGTTGCACCTTAGTATATGAGTAGGATCAGGGACATATTCCTTAAAACATAAAACATATTATGATCCTTAGACACGATACTGAACTGCAACTTCGTTTTTAAAGCCTGTTGCGAACTTTTCCAGAACTTAGAACTTATTCACATGCATCTGTACCAATCTATCCAGTGTATATGTTTCTTTGACAGGTAAGAAATGCTCTATCTTCGTCAACTTTTCAACAATTATCCAAATTTTCGTCAACATTTGCTGACCCTCTTGGTAATCCAAAGAAGAAAACCATTATAACATATTTCCACTTCCACTTAGGAATAGAAAGTGCATTTAGTATCCTTGCCAGCTTTTGCCATTCAGGCTTTACCTACTAACAAAACACTTTGTCACGTATTCTGCTATTTCCCTTTTTATACCTGGTTGTTAGTAAAATCTCCTTGACGTTTTATACATTGCAGTACTACCAGGTTGCATAGCATAAGCCGAGCTATATGGTTCCTATTAATCCTTATAGACTTCGTGGTCACCCATCAATGCGTCCACGAGGTATAACACAAGGCTTTGCTTCCAATTTTTCCTTTTTACTTCTCCCATAATTAACCGTTTCCTTAATGATTATTCTAATATCCATCCATCTCTTGTTTCCCTCTTTTAGGTTTGCTTTCCACTCCTCCAGCATATCCAACACTCAACCTTAGTCCCTTTTGGCTAGCTCATATAACCACTCTAAGTTAAAGTTGAATCTCAATCCTTAACTATTATGAATTTCAGCTTCTCAATGCGTAGCCTTACCATACATTATGATATAATAATAAGATAATGAAACATCTAAAGGCATATTGGTAAAATTAATGTATTAGTAATATATCCATGGCCGAAGCTTCCAATTTTATAACTCAATCTCGACCAAGTTTGCCCGAAAAAAAACTACATTTGAGAGTTTCAAGAATTTTTGTTATTTTTTAAAAGGAAAAACTTGGGAGGGTTAGTTTGGACAATTTCTCAGTAAATATACACATTAGGAAATATAACCAAATTACTATTTTAGCCTCAGCCTGAAATTGTAAAAAAATATCTCCCACTCCCATATTTCCAAAATTATCAAATAGATAAGATACAGAGACGCTCTTCCTCTTCTCTTCTCATCATTTCCATTTCCCCCTCCATCTCCATCCACCATGCTTTCCTCCACCACCACCACCGCCAATTCTCTCACTTCTCTCTCAGCCGCCGCCCACACCACCGCCATTTTCCTTCATCCTCCTCTAGACTCCTCTCTCCGCCTCTTCCTCCGCCGCCGTCCAAACCCCATTTCCGCCATTATAAACCCTTCCCCTTCCCCTTTAGCCGCAAAGCAACAAGTGTACCAGCCATTCCGCCCCCCTCCCTCTCCTCTCCCCTCTCAATACCGGTCCCTTGACGCCGAAGGCAAGCTCAATGTCCTCTCCAACCGCCTTGGACTCTGGTTCGAATACGCCCCCCTCATTTCCTCCTTGATTCAAGAAGGCTTCACACCTTCCACTCTAGAGGAAATCACCGGAATCAGCGGTGTCCAACAGAACATCTTCGTCGTTGGCGCTCAGGTTCGCGATTCCCTAGTCCAGTCCAATAACTCCGATCCAGATGTAATCGCCGCCTTCGATACCAGCGGCGCCGAGTTGCTCTATGAAATTCGCCTCCTAAGTACCGAGAAACGTGCTGCGGCGGCCAAATATATAGTGGAGAACAGGCTTGATAGCAAAGGCGCGCAGGATCTGGCTCGAGCGATGAAAGATTTTCCTCGAAGAAGAGGGGAAAAAGGTTGGGAGTCTTTTGATTACGATTCTCCTGGTGATTGTTTGGCGTTTATGTATTACAGGTTGAGTAGAGAGTACAATAATCAATCGGAGCGGAGAACGGCGGCGTTGGAGGAGGCTTTGAAGGTGGTAGTGACGGATAAGGCAAGGGACCTGATTGTTGGGGATTTGGAGGGAAAAGGAGACGGGAAGGAAGGGGATGAAGAGGAAATCGGAGCGGCAGTTAGGGTTCCGGTGGTGCGGTTGAAGATCGGAGAAGTTGCGGAGGCGACAACGGTAGTGGTGATGCCGGTGTGCAAGGCAGGGAAGGGGGAAATAGGAGTTGGAGAAGCGCCAATGGAGGTAAGAAGCGAGGGAGAATTCGGAGTTGTGGTGGCGGAAAAGGAGTGGAGCAGGTGGGTGGTGCTGCCGGCGTGGGAGCCGGTGGCGGGGTTGGTGAAGGGCGGCGGCGTAGTGGTGGCGTTTGAGGATGCGAGAGCTCTACCATGGCGGGTGAACAGGTGGTACAAGGAGGAGCCAATTCTAGTAGTGGTTGATCGGAGTAGGAAGGAGGTGGTGGCGGGAGATGGGTTTTACCTGACAGAAGCCACCGTGGGCGGCGGCGATGGAGGTGGTGAGTTGAAGGTGGAGAGAGGAAATGCATTAATGGAAATGGAAGTGAAGGAGAGTTTGGGAACTGTATTGTTGGTGGTTAGGCCACCAAAGGAAATGGAAGATGATCAGTTGAGTGATGAAGATTGGGATTGA

mRNA sequence

ATGTTTGTCCCTCATGTGGTGAAGATAAGATACAGAGACGCTCTTCCTCTTCTCTTCTCATCATTTCCATTTCCCCCTCCATCTCCATCCACCATGCTTTCCTCCACCACCACCACCGCCAATTCTCTCACTTCTCTCTCAGCCGCCGCCCACACCACCGCCATTTTCCTTCATCCTCCTCTAGACTCCTCTCTCCGCCTCTTCCTCCGCCGCCGTCCAAACCCCATTTCCGCCATTATAAACCCTTCCCCTTCCCCTTTAGCCGCAAAGCAACAAGTGTACCAGCCATTCCGCCCCCCTCCCTCTCCTCTCCCCTCTCAATACCGGTCCCTTGACGCCGAAGGCAAGCTCAATGTCCTCTCCAACCGCCTTGGACTCTGGTTCGAATACGCCCCCCTCATTTCCTCCTTGATTCAAGAAGGCTTCACACCTTCCACTCTAGAGGAAATCACCGGAATCAGCGGTGTCCAACAGAACATCTTCGTCGTTGGCGCTCAGGTTCGCGATTCCCTAGTCCAGTCCAATAACTCCGATCCAGATGTAATCGCCGCCTTCGATACCAGCGGCGCCGAGTTGCTCTATGAAATTCGCCTCCTAAGTACCGAGAAACGTGCTGCGGCGGCCAAATATATAGTGGAGAACAGGCTTGATAGCAAAGGCGCGCAGGATCTGGCTCGAGCGATGAAAGATTTTCCTCGAAGAAGAGGGGAAAAAGGTTGGGAGTCTTTTGATTACGATTCTCCTGGTGATTGTTTGGCGTTTATGTATTACAGGTTGAGTAGAGAGTACAATAATCAATCGGAGCGGAGAACGGCGGCGTTGGAGGAGGCTTTGAAGGTGGTAGTGACGGATAAGGCAAGGGACCTGATTGTTGGGGATTTGGAGGGAAAAGGAGACGGGAAGGAAGGGGATGAAGAGGAAATCGGAGCGGCAGTTAGGGTTCCGGTGGTGCGGTTGAAGATCGGAGAAGTTGCGGAGGCGACAACGGTAGTGGTGATGCCGGTGTGCAAGGCAGGGAAGGGGGAAATAGGAGTTGGAGAAGCGCCAATGGAGGTAAGAAGCGAGGGAGAATTCGGAGTTGTGGTGGCGGAAAAGGAGTGGAGCAGGTGGGTGGTGCTGCCGGCGTGGGAGCCGGTGGCGGGGTTGGTGAAGGGCGGCGGCGTAGTGGTGGCGTTTGAGGATGCGAGAGCTCTACCATGGCGGGTGAACAGGTGGTACAAGGAGGAGCCAATTCTAGTAGTGGTTGATCGGAGTAGGAAGGAGGTGGTGGCGGGAGATGGGTTTTACCTGACAGAAGCCACCGTGGGCGGCGGCGATGGAGGTGGTGAGTTGAAGGTGGAGAGAGGAAATGCATTAATGGAAATGGAAGTGAAGGAGAGTTTGGGAACTGTATTGTTGGTGGTTAGGCCACCAAAGGAAATGGAAGATGATCAGTTGAGTGATGAAGATTGGGATTGA

Coding sequence (CDS)

ATGTTTGTCCCTCATGTGGTGAAGATAAGATACAGAGACGCTCTTCCTCTTCTCTTCTCATCATTTCCATTTCCCCCTCCATCTCCATCCACCATGCTTTCCTCCACCACCACCACCGCCAATTCTCTCACTTCTCTCTCAGCCGCCGCCCACACCACCGCCATTTTCCTTCATCCTCCTCTAGACTCCTCTCTCCGCCTCTTCCTCCGCCGCCGTCCAAACCCCATTTCCGCCATTATAAACCCTTCCCCTTCCCCTTTAGCCGCAAAGCAACAAGTGTACCAGCCATTCCGCCCCCCTCCCTCTCCTCTCCCCTCTCAATACCGGTCCCTTGACGCCGAAGGCAAGCTCAATGTCCTCTCCAACCGCCTTGGACTCTGGTTCGAATACGCCCCCCTCATTTCCTCCTTGATTCAAGAAGGCTTCACACCTTCCACTCTAGAGGAAATCACCGGAATCAGCGGTGTCCAACAGAACATCTTCGTCGTTGGCGCTCAGGTTCGCGATTCCCTAGTCCAGTCCAATAACTCCGATCCAGATGTAATCGCCGCCTTCGATACCAGCGGCGCCGAGTTGCTCTATGAAATTCGCCTCCTAAGTACCGAGAAACGTGCTGCGGCGGCCAAATATATAGTGGAGAACAGGCTTGATAGCAAAGGCGCGCAGGATCTGGCTCGAGCGATGAAAGATTTTCCTCGAAGAAGAGGGGAAAAAGGTTGGGAGTCTTTTGATTACGATTCTCCTGGTGATTGTTTGGCGTTTATGTATTACAGGTTGAGTAGAGAGTACAATAATCAATCGGAGCGGAGAACGGCGGCGTTGGAGGAGGCTTTGAAGGTGGTAGTGACGGATAAGGCAAGGGACCTGATTGTTGGGGATTTGGAGGGAAAAGGAGACGGGAAGGAAGGGGATGAAGAGGAAATCGGAGCGGCAGTTAGGGTTCCGGTGGTGCGGTTGAAGATCGGAGAAGTTGCGGAGGCGACAACGGTAGTGGTGATGCCGGTGTGCAAGGCAGGGAAGGGGGAAATAGGAGTTGGAGAAGCGCCAATGGAGGTAAGAAGCGAGGGAGAATTCGGAGTTGTGGTGGCGGAAAAGGAGTGGAGCAGGTGGGTGGTGCTGCCGGCGTGGGAGCCGGTGGCGGGGTTGGTGAAGGGCGGCGGCGTAGTGGTGGCGTTTGAGGATGCGAGAGCTCTACCATGGCGGGTGAACAGGTGGTACAAGGAGGAGCCAATTCTAGTAGTGGTTGATCGGAGTAGGAAGGAGGTGGTGGCGGGAGATGGGTTTTACCTGACAGAAGCCACCGTGGGCGGCGGCGATGGAGGTGGTGAGTTGAAGGTGGAGAGAGGAAATGCATTAATGGAAATGGAAGTGAAGGAGAGTTTGGGAACTGTATTGTTGGTGGTTAGGCCACCAAAGGAAATGGAAGATGATCAGTTGAGTGATGAAGATTGGGATTGA

Protein sequence

MFVPHVVKIRYRDALPLLFSSFPFPPPSPSTMLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQQVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEITGISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRTAALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVVVMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVAFEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNALMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD

Homology

[Close]

BLAST of ClCG06G009410 vs. NCBI nr
Match: TYK28779.1 (rubisco accumulation factor 1 [Cucumis melo var. makuwa])

HSP 1 Score: 793.5 bits (2048), Expect = 1.0e-225
Identity = 407/454 (89.65%), Postives = 425/454 (93.61%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLSST T ANSLTSLS+ AHTTAIFLH P+DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWFEYAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
           AALEEALKVVVT+KAR+LIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           VMPVCKAG+GE GVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 392 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNA 451
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 452 LMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           L EM VKESLGTV+LVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of ClCG06G009410 vs. NCBI nr
Match: XP_008462710.1 (PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis melo])

HSP 1 Score: 792.3 bits (2045), Expect = 2.3e-225
Identity = 406/454 (89.43%), Postives = 425/454 (93.61%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLSST T ANSLTSLS+ AHTTAIFLH P+DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWF+YAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
           AALEEALKVVVT+KAR+LIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           VMPVCKAG+GE GVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 392 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNA 451
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 452 LMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           L EM VKESLGTV+LVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of ClCG06G009410 vs. NCBI nr
Match: KAA0062559.1 (rubisco accumulation factor 1 [Cucumis melo var. makuwa])

HSP 1 Score: 790.8 bits (2041), Expect = 6.6e-225
Identity = 406/454 (89.43%), Postives = 424/454 (93.39%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLSST T ANSLTSLS+ AHTTAIFLH P+DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWFEYAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
           AALEEALKV VT+KAR+LIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVGVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           VMPVCKAG+GE GVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 392 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNA 451
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 452 LMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           L EM VKESLGTV+LVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of ClCG06G009410 vs. NCBI nr
Match: XP_038880540.1 (rubisco accumulation factor 1.1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 789.3 bits (2037), Expect = 1.9e-224
Identity = 408/451 (90.47%), Postives = 425/451 (94.24%), Query Frame = 0


Query: 35  STTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQQVY 94
           STTTTANSLTSLSAAAHTTA FLHPP DSSLRLFLRRRPN ISA +N  PSPLAAKQQVY
Sbjct: 3   STTTTANSLTSLSAAAHTTATFLHPPRDSSLRLFLRRRPNSISATLN--PSPLAAKQQVY 62

Query: 95  QPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEITGIS 154
           QPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTP TLEEITGI+
Sbjct: 63  QPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPPTLEEITGIT 122

Query: 155 GVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYIVEN 214
           GVQQNIFVVGAQVR+SLVQSNN+DPDVIAAFDTSGAELLYEIRLLSTEKRAAAA+YIVEN
Sbjct: 123 GVQQNIFVVGAQVRESLVQSNNADPDVIAAFDTSGAELLYEIRLLSTEKRAAAARYIVEN 182

Query: 215 RLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRTAAL 274
           RLD KGAQDLARA+KDFPRRRG+KGWE FDY+ PGDCLA+MYYRLSREYNN SE RTAAL
Sbjct: 183 RLDIKGAQDLARALKDFPRRRGDKGWECFDYEEPGDCLAYMYYRLSREYNNPSEPRTAAL 242

Query: 275 EEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVVVMP 334
           EEALKVVVT+KARDLIVGDLEGKGDGKEG EEEI   +RVPVVR+KIGEVAEATTV+VMP
Sbjct: 243 EEALKVVVTEKARDLIVGDLEGKGDGKEGVEEEIEVGIRVPVVRMKIGEVAEATTVLVMP 302

Query: 335 VCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVAFED 394
           VCKAG+GE GVGEAPME+RSEGEFGVVVAEKEW +WVVLP WEPV GLVKGGGVVVAFED
Sbjct: 303 VCKAGEGEKGVGEAPMELRSEGEFGVVVAEKEWRKWVVLPGWEPVVGLVKGGGVVVAFED 362

Query: 395 ARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNALME 454
           ARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLT ATV    GGGELKV+RGNALME
Sbjct: 363 ARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTGATV----GGGELKVQRGNALME 422

Query: 455 MEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           M VKESLGTVLLVVRPPKEMEDDQLSDEDWD
Sbjct: 423 MGVKESLGTVLLVVRPPKEMEDDQLSDEDWD 447

[Close]

BLAST of ClCG06G009410 vs. NCBI nr
Match: XP_004142574.1 (rubisco accumulation factor 1.1, chloroplastic [Cucumis sativus] >KGN66790.1 hypothetical protein Csa_007640 [Cucumis sativus])

HSP 1 Score: 777.3 bits (2006), Expect = 7.6e-221
Identity = 400/454 (88.11%), Postives = 423/454 (93.17%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLSST T ANSL+SLS+ AHTT+IFLH P DS LRLFLRRR NPISAIINPS S LAAKQ
Sbjct: 1   MLSSTITNANSLSSLSSIAHTTSIFLHQPRDSPLRLFLRRRLNPISAIINPSSSSLAAKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           QVYQPFRPPPSPLP QYRSLD EGKLN+LSNRLGLWFEYAPLISSL+QEGFTP  LEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNILSNRLGLWFEYAPLISSLLQEGFTPPVLEEIT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGVQQN F+VGAQVR+SL+QSN+SDPDVIA+FDT GAELLYEIRLLSTEKRAAAAKYI
Sbjct: 121 GISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAELLYEIRLLSTEKRAAAAKYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           VENRLDSKGAQDLARAMKDFPRRRG+KGWE FDYD  GDCLA+MYYRLSREYN+ +ERRT
Sbjct: 181 VENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDCLAYMYYRLSREYNSSTERRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
           AALEEALKVVVT+KARDLIVGDLEGKGDGK+G EEEIGAAV+VPVVR+KIGEVAEATTVV
Sbjct: 241 AALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAAVKVPVVRMKIGEVAEATTVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           VMPVCKAG+GE GVGEAPMEVRSEGEFGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 392 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNA 451
           FEDAR LPWRVNRWYKEEPILVV DRSR+EVVAGDGFYL    +GGGDGGG+LKVERGNA
Sbjct: 361 FEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYL----MGGGDGGGDLKVERGNA 420

Query: 452 LMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           LMEM VKESLGTVLLVVRPP+E EDDQLSDEDWD
Sbjct: 421 LMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 450

[Close]

BLAST of ClCG06G009410 vs. ExPASy Swiss-Prot
Match: Q9LKR8 (Rubisco accumulation factor 1.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAF1.1 PE=1 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 6.4e-122
Identity = 251/456 (55.04%), Postives = 322/456 (70.61%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLS T TT +S  S+   + T   F   P      ++ +      SA+I  S      KQ
Sbjct: 1   MLSLTATTLSS--SIFTQSKTHGFFNTRP------VYRKPFTTITSALIPASNRQAPPKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           Q+YQPFRPPPSP+P ++RSLD  GK+ VL++RLGLWFEYAPLISSL  EGFTP ++EE+T
Sbjct: 61  QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGV+QN  +VGAQVRDSLVQS  + P++IAAFDT+GAELLYEIRLL+T +R AAA+YI
Sbjct: 121 GISGVEQNSLIVGAQVRDSLVQS-GAKPELIAAFDTNGAELLYEIRLLNTTQRVAAAEYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           V++  D+KGA DLARA+KDFP RRG+ G   FDY+ PGDCL+FM YR SRE+ + SE RT
Sbjct: 181 VDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDCLSFMLYRKSREHRSPSEIRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
             LE+AL+  VT+KA+  ++ +L G+ + +   EEEI   +RVPVVRL+ GEVA A++VV
Sbjct: 241 TLLEQALETAVTEKAKKAVLRELHGESEEERVKEEEI-KIIRVPVVRLRFGEVAGASSVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           V+PVCKA +GE  + EAPME  S GEFGVV AEK+WSRWVVLP W+PV  + K  GV V+
Sbjct: 301 VLPVCKAEEGEEKLLEAPMEFESGGEFGVVEAEKDWSRWVVLPGWDPVVAVRK--GVAVS 360

Query: 392 FEDAR-ALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGN 451
           F D R  LPW      K E I+VV+DR +K V A +G+Y      GG      +K++RG 
Sbjct: 361 FSDDREVLPWN----GKGEAIMVVIDREKKTVEADNGYYYLVVADGG------MKLDRGL 420

Query: 452 ALMEMEVKESLGTVLLVVRPPKEMEDD-QLSDEDWD 486
            L E  V ESLG V+LVVRPP++ +D+ Q++DEDWD
Sbjct: 421 VLKEKGVNESLGMVVLVVRPPRDDDDEWQINDEDWD 434

[Close]

BLAST of ClCG06G009410 vs. ExPASy Swiss-Prot
Match: Q9SR19 (Rubisco accumulation factor 1.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAF1.2 PE=1 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 1.4e-121
Identity = 238/445 (53.48%), Postives = 315/445 (70.79%), Query Frame = 0


Query: 52  TTAIFLHP------PLDSSLRLFLRRRPNPISAIINPSPSPLAAKQQVYQPFRPPPSPLP 111
           T  +F +P      PL  ++   +     P  +  N  P    A+QQ+YQPFRPP SP+P
Sbjct: 17  THGLFTNPITRPVNPLPRTVSFTVTASMIPKRSSANMIPKNPPARQQLYQPFRPPSSPIP 76

Query: 112 SQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEITGISGVQQNIFVVGA 171
           +Q+RSLD+ GK+ +L+ R+ LWFEYAPLISSL  +GFTP T+EE+TGIS ++QN  +VGA
Sbjct: 77  TQFRSLDSAGKIEILAGRMALWFEYAPLISSLYTDGFTPPTIEELTGISSIEQNRLIVGA 136

Query: 172 QVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLA 231
           QVRDS++QS + +P++I+AFDT GAELLYEIRLLST +R AAA +I++  +DSKGAQDLA
Sbjct: 137 QVRDSILQSIH-EPELISAFDTGGAELLYEIRLLSTTQRVAAATFIIDRNIDSKGAQDLA 196

Query: 232 RAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRTAALEEALKVVVTDK 291
           RA+KD+P RRG+ GW  FDY+ PGDCL+F+YYR SRE  N S++RT+ L +AL V  ++K
Sbjct: 197 RAIKDYPNRRGDVGWLDFDYNLPGDCLSFLYYRQSRENKNPSDQRTSMLLQALGVAESEK 256

Query: 292 ARDL----IVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVVVMPVCKAGKG 351
           A++     + GD E + + ++  +EE   A+R+PVVRLK GEVAEAT+VVV+PVCKA +G
Sbjct: 257 AKNRLNTELYGDKEAEKEKEKKKKEEEVKAIRIPVVRLKFGEVAEATSVVVLPVCKAEEG 316

Query: 352 EIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVAFEDARALPWR 411
           E  + EAPME+ + G+F VV AEK W RWVVLP+W PVA + KGG  V   +D + LPW 
Sbjct: 317 EKKILEAPMEIIAGGDFKVVEAEKGWKRWVVLPSWNPVAAIGKGGVAVSFRDDRKVLPWD 376

Query: 412 VNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNALMEMEVKESL 471
                KEEP+LVV DR R  V A DG+YL  A  G       LK+E+G+ L   EVKESL
Sbjct: 377 ----GKEEPLLVVADRVRNVVEADDGYYLVVAENG-------LKLEKGSDLKAREVKESL 436

Query: 472 GTVLLVVRPPKEMEDD-QLSDEDWD 486
           G V+LVVRPP+E +DD Q S ++WD
Sbjct: 437 GMVVLVVRPPREDDDDWQTSHQNWD 449

[Close]

BLAST of ClCG06G009410 vs. ExPASy Swiss-Prot
Match: Q7XDY9 (Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RAF1 PE=2 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 8.8e-95
Identity = 203/415 (48.92%), Postives = 271/415 (65.30%), Query Frame = 0


Query: 83  SPSPLAAKQQVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGF 142
           +P P A   Q+YQPF PPPSPLP +Y+ LD   +L VL +RLGLW EYAPLIS+L +EGF
Sbjct: 69  TPPPTAPPDQLYQPFHPPPSPLPDKYKDLDLGQRLAVLRDRLGLWHEYAPLISALSREGF 128

Query: 143 TPSTLEEITGISGVQQNIFVVGAQVRDSLVQSNNSDP-DVIAAFDT-SGAELLYEIRLLS 202
           TPS++EE TGISGV+QN  VV  QVRDSLV      P +++  FD+  G ELLYE+R L+
Sbjct: 129 TPSSIEEATGISGVEQNSVVVATQVRDSLVADEGGFPAELLRYFDSYGGPELLYELRFLN 188

Query: 203 TEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLS 262
             +RA AA++ ++ RL+ +G ++LAR+MKDFP+RRG+ GWE+F  D+PGDCLAF  +R S
Sbjct: 189 ARQRADAARHAIDRRLEPRGVRELARSMKDFPQRRGDDGWEAFTRDNPGDCLAFARFRQS 248

Query: 263 REYNNQSERRTAALEEALKVVVTDKARDLIVGDLE---GKGDGKEGDEEE-----IGAAV 322
           RE  + +E   A LE AL+VV T+ AR  +  +L+    K  G+E D+E+       AA 
Sbjct: 249 REAID-AEDSVAELERALEVVDTEPARARVEAELDRARRKAAGEEVDDEDGAANAAAAAS 308

Query: 323 R--VPVVRLKIGEVAEATTVVVMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRW 382
           R  VPVVRL  GEVAEATTV+++PV + G G   +  AP   R++ + G+V  +K W+RW
Sbjct: 309 RPAVPVVRLMYGEVAEATTVLLLPVVREGDGGEALAHAPRRTRTDADLGMVEVDKGWTRW 368

Query: 383 VVLPAWEPVAGLVKGGGVVVAFEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYL 442
            V+P W PVA  V G  VV+   D R LPWR     + E +LVV +R R+EVV  DG Y+
Sbjct: 369 AVVPGWGPVAE-VAGEAVVIELADGRTLPWRS---AEAERVLVVANRGRREVVE-DGIYV 428

Query: 443 TEATVGGGDGGGELKVERGNALMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
            E         G L VE+G  L    V E+   VL+VVRPP++ EDD +SD++WD
Sbjct: 429 VERE-------GRLVVEKGRKLAAEGVGEAAAEVLVVVRPPRD-EDDMISDDEWD 469

[Close]

BLAST of ClCG06G009410 vs. ExPASy Swiss-Prot
Match: B4FR29 (Rubisco accumulation factor 1, chloroplastic OS=Zea mays OX=4577 GN=RAF1 PE=1 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 7.7e-91
Identity = 213/482 (44.19%), Postives = 292/482 (60.58%), Query Frame = 0


Query: 17  LLFSSFPFPPPSPSTMLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPI 76
           +L  S P P P+ ST       TA  +     A+H  A  +  P   S       R  P 
Sbjct: 1   MLSLSHPHPHPAASTTAPRHQRTA-PVWHRRRASHIAASAILLPGGGS----TGGRGGPG 60

Query: 77  SAIINPSPSPLAAKQQVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISS 136
              +  +P P+A   Q+YQPF PPPSPLP   R+LD   +L +L +R+GLW EYAPLISS
Sbjct: 61  DRRLPFTPPPMAPPGQLYQPFHPPPSPLPPSLRNLDLSERLQILRDRMGLWHEYAPLISS 120

Query: 137 LIQEGFTPSTLEEITGISGVQQNIFVVGAQVRDSLVQSNNS--DPDVIAAFDT-SGAELL 196
           L ++GF PS+++E TGISGV+QN  VV +QVRDSL+    +   PD++  FD+  G E+L
Sbjct: 121 LSRDGFNPSSIQEATGISGVEQNCLVVASQVRDSLLDDRAAAFPPDLLPYFDSLGGPEVL 180

Query: 197 YEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLA 256
           YE+R L+  +RA AA++ +  RL+ KG ++LARAMK FPR RGE+GWE+F  DSP DCLA
Sbjct: 181 YELRFLNARQRADAARHAIGYRLEPKGVRELARAMKGFPRWRGEEGWEAFSKDSPADCLA 240

Query: 257 FMYYRLSREYNNQSERRTAALEEALKVVVTDKARDLIVGDLE---GKGDG-----KEGDE 316
           F  +R SRE  +  + R A LE AL+VV T+  R  +  +LE    K  G     +EG+E
Sbjct: 241 FARFRQSREAIDVQD-RVAELERALQVVETESGRARVELELERARRKAAGEEEVDEEGEE 300

Query: 317 EEIGAAVR--VPVVRLKIGEVAEATTVVVMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVA 376
           ++  A++R  V VVRL+ GEVAEATTV+++PV +   G   +  AP   +++   GVV  
Sbjct: 301 DDAAASLRPGVTVVRLRYGEVAEATTVILLPVVRETDGVAAMESAPRRAKTDVGLGVVEV 360

Query: 377 EKEWSRWVVLPAWEPVAGLVKGGGVVVAFEDARALPWRVNRWYKEEPILVVVDRSRKEVV 436
           ++ W+RW V+P W PVA       VVV   D R LPWR++    EEP+LV+ +RS+KEVV
Sbjct: 361 DRAWARWAVVPGWGPVAE-AADDAVVVELADGRRLPWRMS---DEEPVLVIANRSKKEVV 420

Query: 437 AGDGFYLTEATVGGGDGGGELKVERGNALMEMEVKESLGTVLLVVRPPKEMEDDQLSDED 486
             +G Y+ E         G L VERG  L E  +  +   V++VVRPPK+ EDD +SDE+
Sbjct: 421 E-EGVYVLERE-------GRLVVERGKKLAEQGIAAAAAEVVIVVRPPKD-EDDMVSDEE 463

[Close]

BLAST of ClCG06G009410 vs. ExPASy Swiss-Prot
Match: Q8YLP6 (RuBisCO accumulation factor 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=raf1 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.6e-24
Identity = 117/407 (28.75%), Postives = 192/407 (47.17%), Query Frame = 0


Query: 99  PPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEITGISGVQQ 158
           PP +P P    +  A+  L  L  + G W E+   I+SL + G+ P  + E TG   VQQ
Sbjct: 5   PPNAPNPENATNELAQELLRKLRQKQGNWVEWGQAIASLQKSGYNPQDIFEATGFEPVQQ 64

Query: 159 NIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYIVENRLDS 218
           N  +VG+QV +SL +S  S    +A + T G+++LYE+RLL+ E+RAAA      +++D+
Sbjct: 65  NQVIVGSQVYNSLEKSGAS-AATLAHYATRGSDVLYELRLLTHEERAAAGDLTFTHKVDA 124

Query: 219 KGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRTAALEEAL 278
             A+++A+A+KDF R R     E F  + PGD +A+  ++L+R+Y++  E R+  +   L
Sbjct: 125 DEAREIAKAIKDFSRFRILP--EGFS-NHPGDAVAYQAWKLARQYSDLQE-RSRLIARGL 184

Query: 279 KVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEV-------AEATTVV 338
           +   ++ AR  I               E++   V   VV  +   +        E     
Sbjct: 185 RFAHSETARKQI---------------EQL--LVDFTVVSQRPAPIPPFFRFDTEDELPR 244

Query: 339 VMPVCKAGKGEIGVGEAPME---------VRSEGEFGVVVAEKEWSRWVVLPAWEPVAGL 398
           ++PV         VG+ P++         V     F +V    E   WV LP W+     
Sbjct: 245 IVPV---------VGQLPLKAEELKAVPLVEEIEPFRLVKFSGE-QAWVALPGWQ----- 304

Query: 399 VKGGGVVVAFEDARALPWRVNRWYKEE-----PILVVVDRSRKEVVAGDGFYLTEATVGG 458
                V++A ED   +    +R+ K+      P+LVVVDRS++E    D  Y        
Sbjct: 305 -----VLLAAEDPVTILATSDRFPKQNQTEPGPVLVVVDRSQRE--WNDFSYFVV----- 357

Query: 459 GDGGGELKVERGNALMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDW 485
            D  GEL  +      E  +   LG V+++VR P+ + D+ ++ + W
Sbjct: 365 -DHDGELDFQWFETKPEFPI---LGKVIILVR-PRRILDENVTKDSW 357

[Close]

BLAST of ClCG06G009410 vs. ExPASy TrEMBL
Match: A0A5D3DZE4 (Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001420 PE=4 SV=1)

HSP 1 Score: 793.5 bits (2048), Expect = 5.0e-226
Identity = 407/454 (89.65%), Postives = 425/454 (93.61%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLSST T ANSLTSLS+ AHTTAIFLH P+DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWFEYAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
           AALEEALKVVVT+KAR+LIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           VMPVCKAG+GE GVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 392 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNA 451
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 452 LMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           L EM VKESLGTV+LVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of ClCG06G009410 vs. ExPASy TrEMBL
Match: A0A1S3CHL8 (rubisco accumulation factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501013 PE=4 SV=1)

HSP 1 Score: 792.3 bits (2045), Expect = 1.1e-225
Identity = 406/454 (89.43%), Postives = 425/454 (93.61%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLSST T ANSLTSLS+ AHTTAIFLH P+DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWF+YAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
           AALEEALKVVVT+KAR+LIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           VMPVCKAG+GE GVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 392 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNA 451
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 452 LMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           L EM VKESLGTV+LVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of ClCG06G009410 vs. ExPASy TrEMBL
Match: A0A5A7VA63 (Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00440 PE=4 SV=1)

HSP 1 Score: 790.8 bits (2041), Expect = 3.2e-225
Identity = 406/454 (89.43%), Postives = 424/454 (93.39%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLSST T ANSLTSLS+ AHTTAIFLH P+DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWFEYAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
           AALEEALKV VT+KAR+LIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVGVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           VMPVCKAG+GE GVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 392 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNA 451
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 452 LMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           L EM VKESLGTV+LVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of ClCG06G009410 vs. ExPASy TrEMBL
Match: A0A0A0LY43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690280 PE=4 SV=1)

HSP 1 Score: 777.3 bits (2006), Expect = 3.7e-221
Identity = 400/454 (88.11%), Postives = 423/454 (93.17%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLSST T ANSL+SLS+ AHTT+IFLH P DS LRLFLRRR NPISAIINPS S LAAKQ
Sbjct: 1   MLSSTITNANSLSSLSSIAHTTSIFLHQPRDSPLRLFLRRRLNPISAIINPSSSSLAAKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           QVYQPFRPPPSPLP QYRSLD EGKLN+LSNRLGLWFEYAPLISSL+QEGFTP  LEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNILSNRLGLWFEYAPLISSLLQEGFTPPVLEEIT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGVQQN F+VGAQVR+SL+QSN+SDPDVIA+FDT GAELLYEIRLLSTEKRAAAAKYI
Sbjct: 121 GISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAELLYEIRLLSTEKRAAAAKYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           VENRLDSKGAQDLARAMKDFPRRRG+KGWE FDYD  GDCLA+MYYRLSREYN+ +ERRT
Sbjct: 181 VENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDCLAYMYYRLSREYNSSTERRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
           AALEEALKVVVT+KARDLIVGDLEGKGDGK+G EEEIGAAV+VPVVR+KIGEVAEATTVV
Sbjct: 241 AALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAAVKVPVVRMKIGEVAEATTVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           VMPVCKAG+GE GVGEAPMEVRSEGEFGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 392 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNA 451
           FEDAR LPWRVNRWYKEEPILVV DRSR+EVVAGDGFYL    +GGGDGGG+LKVERGNA
Sbjct: 361 FEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYL----MGGGDGGGDLKVERGNA 420

Query: 452 LMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           LMEM VKESLGTVLLVVRPP+E EDDQLSDEDWD
Sbjct: 421 LMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 450

[Close]

BLAST of ClCG06G009410 vs. ExPASy TrEMBL
Match: A0A6J1F451 (rubisco accumulation factor 1.1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439956 PE=4 SV=1)

HSP 1 Score: 668.3 bits (1723), Expect = 2.4e-188
Identity = 361/455 (79.34%), Postives = 394/455 (86.59%), Query Frame = 0


Query: 35  STTTTANSLTSLSAAAHTTAIF-LHPPLDSSLRLFLRRRPNPISAIIN--PSPSPLAAKQ 94
           S T  A SL+  +AAAHTT  F LH P    LRLFLRR PNPISA +N  PSPSPL AK 
Sbjct: 3   SATAPATSLS--AAAAHTTTTFLLHTP---PLRLFLRRPPNPISASLNPSPSPSPLVAKP 62

Query: 95  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 154
           QVYQPFRPPPSPLPSQYRSLDA GKL+VL+NRLGLWFEYAPLISSLIQEGFTP T+EEIT
Sbjct: 63  QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 122

Query: 155 GISGVQQNIFVVGAQVRDSLVQS-NNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKY 214
           GI GVQQN  VVGAQVR+SLVQ+ N++DPD+IAAFDT GAELLYEIRLL+ EKRAAAA+Y
Sbjct: 123 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 182

Query: 215 IVENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERR 274
           IVENRLD KGAQDLARAMKDFPRRRG+KGWESF+YD PGDCLAFM+YRLSREY+N SE R
Sbjct: 183 IVENRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 242

Query: 275 TAALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTV 334
           TAALE+ALKV VT++AR LIV DLE +G+GK+  EEEI A VRVPVVRLKIGEVAEATTV
Sbjct: 243 TAALEDALKVAVTEEARSLIVRDLEREGEGKDEVEEEIEAGVRVPVVRLKIGEVAEATTV 302

Query: 335 VVMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVV 394
           VV+PVC   +G  GVGEAPMEVRSEGEFGVVVAE+ W RWVVLP WEP+AGL K GGVVV
Sbjct: 303 VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVAEEGWRRWVVLPGWEPIAGLGK-GGVVV 362

Query: 395 AFEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGN 454
           AF+DARALPWRVNRWYKEE ILVV DRSRKEV AGDGFYLT AT  G D  GELKV+RG+
Sbjct: 363 AFKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGAT--GSD--GELKVQRGS 422

Query: 455 ALMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
            LMEM +KESLGTVLLVVRPPK+M+DDQLSDEDWD
Sbjct: 423 ELMEMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 447

[Close]

BLAST of ClCG06G009410 vs. TAIR 10
Match: AT5G28500.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04550.1); Has 109 Blast hits to 109 proteins in 49 species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 439.1 bits (1128), Expect = 4.6e-123
Identity = 251/456 (55.04%), Postives = 322/456 (70.61%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLS T TT +S  S+   + T   F   P      ++ +      SA+I  S      KQ
Sbjct: 1   MLSLTATTLSS--SIFTQSKTHGFFNTRP------VYRKPFTTITSALIPASNRQAPPKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           Q+YQPFRPPPSP+P ++RSLD  GK+ VL++RLGLWFEYAPLISSL  EGFTP ++EE+T
Sbjct: 61  QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGV+QN  +VGAQVRDSLVQS  + P++IAAFDT+GAELLYEIRLL+T +R AAA+YI
Sbjct: 121 GISGVEQNSLIVGAQVRDSLVQS-GAKPELIAAFDTNGAELLYEIRLLNTTQRVAAAEYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           V++  D+KGA DLARA+KDFP RRG+ G   FDY+ PGDCL+FM YR SRE+ + SE RT
Sbjct: 181 VDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDCLSFMLYRKSREHRSPSEIRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
             LE+AL+  VT+KA+  ++ +L G+ + +   EEEI   +RVPVVRL+ GEVA A++VV
Sbjct: 241 TLLEQALETAVTEKAKKAVLRELHGESEEERVKEEEI-KIIRVPVVRLRFGEVAGASSVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           V+PVCKA +GE  + EAPME  S GEFGVV AEK+WSRWVVLP W+PV  + K  GV V+
Sbjct: 301 VLPVCKAEEGEEKLLEAPMEFESGGEFGVVEAEKDWSRWVVLPGWDPVVAVRK--GVAVS 360

Query: 392 FEDAR-ALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGN 451
           F D R  LPW      K E I+VV+DR +K V A +G+Y      GG      +K++RG 
Sbjct: 361 FSDDREVLPWN----GKGEAIMVVIDREKKTVEADNGYYYLVVADGG------MKLDRGL 420

Query: 452 ALMEMEVKESLGTVLLVVRPPKEMEDD-QLSDEDWD 486
            L E  V ESLG V+LVVRPP++ +D+ Q++DEDWD
Sbjct: 421 VLKEKGVNESLGMVVLVVRPPRDDDDEWQINDEDWD 434

[Close]

BLAST of ClCG06G009410 vs. TAIR 10
Match: AT3G04550.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 438.0 bits (1125), Expect = 1.0e-122
Identity = 238/445 (53.48%), Postives = 315/445 (70.79%), Query Frame = 0


Query: 52  TTAIFLHP------PLDSSLRLFLRRRPNPISAIINPSPSPLAAKQQVYQPFRPPPSPLP 111
           T  +F +P      PL  ++   +     P  +  N  P    A+QQ+YQPFRPP SP+P
Sbjct: 17  THGLFTNPITRPVNPLPRTVSFTVTASMIPKRSSANMIPKNPPARQQLYQPFRPPSSPIP 76

Query: 112 SQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEITGISGVQQNIFVVGA 171
           +Q+RSLD+ GK+ +L+ R+ LWFEYAPLISSL  +GFTP T+EE+TGIS ++QN  +VGA
Sbjct: 77  TQFRSLDSAGKIEILAGRMALWFEYAPLISSLYTDGFTPPTIEELTGISSIEQNRLIVGA 136

Query: 172 QVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLA 231
           QVRDS++QS + +P++I+AFDT GAELLYEIRLLST +R AAA +I++  +DSKGAQDLA
Sbjct: 137 QVRDSILQSIH-EPELISAFDTGGAELLYEIRLLSTTQRVAAATFIIDRNIDSKGAQDLA 196

Query: 232 RAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRTAALEEALKVVVTDK 291
           RA+KD+P RRG+ GW  FDY+ PGDCL+F+YYR SRE  N S++RT+ L +AL V  ++K
Sbjct: 197 RAIKDYPNRRGDVGWLDFDYNLPGDCLSFLYYRQSRENKNPSDQRTSMLLQALGVAESEK 256

Query: 292 ARDL----IVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVVVMPVCKAGKG 351
           A++     + GD E + + ++  +EE   A+R+PVVRLK GEVAEAT+VVV+PVCKA +G
Sbjct: 257 AKNRLNTELYGDKEAEKEKEKKKKEEEVKAIRIPVVRLKFGEVAEATSVVVLPVCKAEEG 316

Query: 352 EIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVAFEDARALPWR 411
           E  + EAPME+ + G+F VV AEK W RWVVLP+W PVA + KGG  V   +D + LPW 
Sbjct: 317 EKKILEAPMEIIAGGDFKVVEAEKGWKRWVVLPSWNPVAAIGKGGVAVSFRDDRKVLPWD 376

Query: 412 VNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNALMEMEVKESL 471
                KEEP+LVV DR R  V A DG+YL  A  G       LK+E+G+ L   EVKESL
Sbjct: 377 ----GKEEPLLVVADRVRNVVEADDGYYLVVAENG-------LKLEKGSDLKAREVKESL 436

Query: 472 GTVLLVVRPPKEMEDD-QLSDEDWD 486
           G V+LVVRPP+E +DD Q S ++WD
Sbjct: 437 GMVVLVVRPPREDDDDWQTSHQNWD 449

[Close]

BLAST of ClCG06G009410 vs. TAIR 10
Match: AT5G28500.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04550.1). )

HSP 1 Score: 278.1 bits (710), Expect = 1.3e-74
Identity = 153/275 (55.64%), Postives = 199/275 (72.36%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLS T TT +S  S+   + T   F   P      ++ +      SA+I  S      KQ
Sbjct: 1   MLSLTATTLSS--SIFTQSKTHGFFNTRP------VYRKPFTTITSALIPASNRQAPPKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           Q+YQPFRPPPSP+P ++RSLD  GK+ VL++RLGLWFEYAPLISSL  EGFTP ++EE+T
Sbjct: 61  QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGV+QN  +VGAQVRDSLVQS  + P++IAAFDT+GAELLYEIRLL+T +R AAA+YI
Sbjct: 121 GISGVEQNSLIVGAQVRDSLVQS-GAKPELIAAFDTNGAELLYEIRLLNTTQRVAAAEYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           V++  D+KGA DLARA+KDFP RRG+ G   FDY+ PGDCL+FM YR SRE+ + SE RT
Sbjct: 181 VDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDCLSFMLYRKSREHRSPSEIRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEE 307
             LE+AL+  VT+KA+  ++ +L G+ + + G E+
Sbjct: 241 TLLEQALETAVTEKAKKAVLRELHGESEEERGKED 266

The following BLAST results are available for this feature:

BLAST of ClCG06G009410 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28779.1	1.0e-225	89.65	rubisco accumulation factor 1 [Cucumis melo var. makuwa]	[more]
XP_008462710.1	2.3e-225	89.43	PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis melo]	[more]
KAA0062559.1	6.6e-225	89.43	rubisco accumulation factor 1 [Cucumis melo var. makuwa]	[more]
XP_038880540.1	1.9e-224	90.47	rubisco accumulation factor 1.1, chloroplastic-like [Benincasa hispida]	[more]
XP_004142574.1	7.6e-221	88.11	rubisco accumulation factor 1.1, chloroplastic [Cucumis sativus] >KGN66790.1 hyp...	[more]

BLAST of ClCG06G009410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LKR8	6.4e-122	55.04	Rubisco accumulation factor 1.1, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9SR19	1.4e-121	53.48	Rubisco accumulation factor 1.2, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q7XDY9	8.8e-95	48.92	Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=...	[more]
B4FR29	7.7e-91	44.19	Rubisco accumulation factor 1, chloroplastic OS=Zea mays OX=4577 GN=RAF1 PE=1 SV...	[more]
Q8YLP6	3.6e-24	28.75	RuBisCO accumulation factor 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX ...	[more]

BLAST of ClCG06G009410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZE4	5.0e-226	89.65	Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CHL8	1.1e-225	89.43	rubisco accumulation factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A5A7VA63	3.2e-225	89.43	Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A0A0LY43	3.7e-221	88.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690280 PE=4 SV=1	[more]
A0A6J1F451	2.4e-188	79.34	rubisco accumulation factor 1.1, chloroplastic-like OS=Cucurbita moschata OX=366...	[more]

BLAST of ClCG06G009410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28500.1	4.6e-123	55.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G04550.1	1.0e-122	53.48	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]
AT5G28500.2	1.3e-74	55.64	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040858	Rubisco accumulation factor 1, C-terminal	PFAM	PF18087	RuBisCo_chap_C	coord: 314..472 e-value: 2.5E-32 score: 111.4
IPR040781	Rubisco accumulation factor 1, helix turn helix domain	PFAM	PF18579	Raf1_HTH	coord: 112..172 e-value: 2.0E-22 score: 78.6
IPR041358	Rubisco accumulation factor 1, alpha helical domain	PFAM	PF18578	Raf1_N	coord: 185..291 e-value: 6.9E-36 score: 123.0
None	No IPR available	PANTHER	PTHR35299:SF3	RUBISCO ACCUMULATION FACTOR 1.2, CHLOROPLASTIC	coord: 32..485
IPR037494	Rubisco accumulation factor 1	PANTHER	PTHR35299	FAMILY NOT NAMED	coord: 32..485

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G009410.2	ClCG06G009410.2	mRNA