ClCG06G009270 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G009270
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	ribosomal protein L5
Location	CG_Chr06: 15520690 .. 15521367 (+)
RNA-Seq Expression	ClCG06G009270
Synteny	ClCG06G009270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCATACCAATCCTACACTCCTTTCTCCTATTCTTTTTTTGTCACTTCTTGGAAATCACGAAGAGGATTCTCAGACTGGATTGAGCGGGAGGGAAGTTGCTGTCGATATTGGAAACGTCTTTCAGTTCTTTGATCCATTTCGTGGTGCGAAATCCATCATTTGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAATCGAAGCTGTTGCATTGTTTGCTCCAATGATGACCTTTTTTTATCTCATTTGTATTCCAATAGGAAAAAAGAAAGAATTTTTCCGTTTCACTCAACCATCTTTTTGAAGCAAATAGTTCACAGTGCTCATTCTATAGATACTGTGTAAAAAAGCCAACTCATGTTTTCACTCGATTTTCATTATGAAGATGTATCACTTCAGGATCCATTGCTCAAACTAAATTACGCCACCGTTATGGAAGTTCCTGGATCATGTGAGATAAGAGCCATACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTTGCTATGAAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCATCAGGAAAGTCATTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAAAAAGCACTCTTCGAGGGCATGGAATGTAG

mRNA sequence

ATGACCCATACCAATCCTACACTCCTTTCTCCTATTCTTTTTTTGTCACTTCTTGGAAATCACGAAGAGGATTCTCAGACTGGATTGAGCGGGAGGGAAGTTGCTGTCGATATTGGAAACGTCTTTCAGTTCTTTGATCCATTTCGTGATGTATCACTTCAGGATCCATTGCTCAAACTAAATTACGCCACCGTTATGGAAGTTCCTGGATCATGTGAGATAAGAGCCATACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTTGCTATGAAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCATCAGGAAAGTCATTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAAAAAGCACTCTTCGAGGGCATGGAATGTAG

Coding sequence (CDS)

ATGACCCATACCAATCCTACACTCCTTTCTCCTATTCTTTTTTTGTCACTTCTTGGAAATCACGAAGAGGATTCTCAGACTGGATTGAGCGGGAGGGAAGTTGCTGTCGATATTGGAAACGTCTTTCAGTTCTTTGATCCATTTCGTGATGTATCACTTCAGGATCCATTGCTCAAACTAAATTACGCCACCGTTATGGAAGTTCCTGGATCATGTGAGATAAGAGCCATACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTTGCTATGAAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCATCAGGAAAGTCATTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAAAAAGCACTCTTCGAGGGCATGGAATGTAG

Protein sequence

MTHTNPTLLSPILFLSLLGNHEEDSQTGLSGREVAVDIGNVFQFFDPFRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM

Homology

[Close]

BLAST of ClCG06G009270 vs. NCBI nr
Match: KAF4349909.1 (hypothetical protein G4B88_002331 [Cannabis sativa])

HSP 1 Score: 204.9 bits (520), Expect = 4.6e-49
Identity = 115/211 (54.50%), Postives = 126/211 (59.72%), Query Frame = 0


Query: 1   MTHTNPTLLSPILFLSLLGNHEEDSQTGLSGREVAVDIGNVFQ----------------- 60
           +THTNPTLLS I+ LSLLGNHEEDS+TGLSGR  AV IGNVF                  
Sbjct: 46  VTHTNPTLLSSIVSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQLF 105

Query: 61  ----------------------------------------------------FFDPFRDV 120
                                                                +  + DV
Sbjct: 106 GYAIFGFALTEAIAILCPLLRKLKFHSYNYLFEADSSQCSFYRYCKSQLMFPLYFHYEDV 165

Query: 121 SLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGK 143
           S QDPLLK N+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQT+RGS+GK
Sbjct: 166 SRQDPLLKPNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTERGSTGK 225

[Close]

BLAST of ClCG06G009270 vs. NCBI nr
Match: KAF3452179.1 (hypothetical protein FNV43_RR08277 [Rhamnella rubrinervis])

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-43
Identity = 105/184 (57.07%), Postives = 112/184 (60.87%), Query Frame = 0


Query: 15  LSLLGNHEEDSQTGLSGREVAVDIGNV--------------------------------- 74
           LSLLGNHEEDS+TGLSGR  AV IGNV                                 
Sbjct: 133 LSLLGNHEEDSRTGLSGRGAAVGIGNVLSSLIHSVARNPSLAKQSFGYAILGFALTEAIA 192

Query: 75  -----------------------FQFFDPFRDVSLQDPLLKLNYATVMEVPGSCEIRAIP 134
                                  F     + DVS QDPLLK N+A VMEVPGSCEIR +P
Sbjct: 193 SFASFFANSSQCSFYRKSKSHLMFPLHFHYEDVSRQDPLLKPNHANVMEVPGSCEIRVVP 252

Query: 135 KAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLR 143
           KAPYDFIIKNGK AM+IPRGQKFIQTQRGS+GKSFRSN FL SNKDKGYVSDLAR+STLR
Sbjct: 253 KAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFRSNQFLGSNKDKGYVSDLARQSTLR 312

[Close]

BLAST of ClCG06G009270 vs. NCBI nr
Match: YP_009913650.1 (ribosomal protein L5 [Luffa acutangula] >QLJ93020.1 ribosomal protein L5 [Luffa acutangula])

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-40
Identity = 84/95 (88.42%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVS QDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFLESNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of ClCG06G009270 vs. NCBI nr
Match: QHE65829.1 (ribosomal protein L5 [Castanospermum australe])

HSP 1 Score: 176.0 bits (445), Expect = 2.3e-40
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 41  VFQFFDPFRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQK 100
           +F  +  + DVS QDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQK
Sbjct: 1   MFPLYFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 101 FIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           FIQTQRGS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of ClCG06G009270 vs. NCBI nr
Match: YP_009522804.1 (ribosomal protein L5 [Styphnolobium japonicum] >AXQ37258.1 ribosomal protein L5 [Styphnolobium japonicum])

HSP 1 Score: 174.9 bits (442), Expect = 5.1e-40
Identity = 83/102 (81.37%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 41  VFQFFDPFRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQK 100
           +F  +  + DVS QDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQK
Sbjct: 1   MFPLYFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 101 FIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           FIQTQ+GS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 61  FIQTQKGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of ClCG06G009270 vs. ExPASy Swiss-Prot
Match: P42793 (60S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL5 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-39
Identity = 79/95 (83.16%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DV  QD LLKLNYA VMEVPG CEIR +PKAPY+FIIKNGK AM+IP GQKFIQTQRG
Sbjct: 8   YEDVLRQDLLLKLNYANVMEVPGLCEIRVVPKAPYNFIIKNGKLAMEIPCGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of ClCG06G009270 vs. ExPASy Swiss-Prot
Match: Q05492 (60S ribosomal protein L5, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPL5 PE=2 SV=2)

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-35
Identity = 76/97 (78.35%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPK--APYDFIIKNGKFAMKIPRGQKFIQTQ 107
           + DV  QD LLKLN A VMEVPG CEIR +PK  + YDFIIKNGK AM+I RGQKFIQT+
Sbjct: 8   YEDVLRQDLLLKLNLANVMEVPGLCEIRIVPKTSSTYDFIIKNGKLAMEILRGQKFIQTE 67

Query: 108 RGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           RGS+GKSFRSNPFLESNKDKGYVSDLAR+S LRGHGM
Sbjct: 68  RGSTGKSFRSNPFLESNKDKGYVSDLARQSILRGHGM 104

[Close]

BLAST of ClCG06G009270 vs. ExPASy Swiss-Prot
Match: P49388 (60S ribosomal protein L5, mitochondrial OS=Brassica napus OX=3708 GN=RPL5 PE=3 SV=2)

HSP 1 Score: 149.1 bits (375), Expect = 3.9e-35
Identity = 72/95 (75.79%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVS QDPLL     T+ +  GSCEIR +P  PY+FIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLNRITPTLWKFLGSCEIRVVPNGPYNFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of ClCG06G009270 vs. ExPASy Swiss-Prot
Match: P51409 (60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum OX=4113 GN=RPL5 PE=2 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 5.6e-26
Identity = 69/104 (66.35%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 41  VFQFFDPFRDVSLQDPLLKLNYATVMEVPGSCEIRAIPK-APYDFIIKNGKFAMKIPRGQ 100
           +F  +  + DV  QD LLKLNYA VMEVPG C+I  +PK AP    IKNGK AM+I  GQ
Sbjct: 5   MFPLYFHYEDVLRQDLLLKLNYANVMEVPGLCKIIVVPKTAP---SIKNGKLAMEISCGQ 64

Query: 101 KFIQTQRGSSGKSFRSNPFLESNKD-KGYVSDLARKSTLRGHGM 143
           K    QR S+GKSFRSNPFL SNKD KGYVSDLAR+STLRGHGM
Sbjct: 65  KL--KQRASTGKSFRSNPFLGSNKDKKGYVSDLARQSTLRGHGM 103

[Close]

BLAST of ClCG06G009270 vs. ExPASy Swiss-Prot
Match: P26860 (60S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL5 PE=3 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-19
Identity = 58/99 (58.59%), Postives = 70/99 (70.71%), Query Frame = 0


Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQ-R 107
           +  V   D LLK+NY  +MEVP  C+I  +PKAP +F IKN K AM+I  GQKFIQT+ R
Sbjct: 13  YNQVIRPDLLLKINYENIMEVPRLCKIIVVPKAPSNF-IKNVKLAMEIVCGQKFIQTRSR 72

Query: 108 GSSGKSFRSNPFL---ESNKDKGYVSDLARKSTLRGHGM 143
           GS+GKSFR N F+   ES +D GYV+ LAR STLRGH M
Sbjct: 73  GSTGKSFRFNKFVLNQESKRDTGYVTYLAR-STLRGHIM 109

[Close]

BLAST of ClCG06G009270 vs. ExPASy TrEMBL
Match: A0A7J6DWT2 (ATP-synt_C domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_002331 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.2e-49
Identity = 115/211 (54.50%), Postives = 126/211 (59.72%), Query Frame = 0


Query: 1   MTHTNPTLLSPILFLSLLGNHEEDSQTGLSGREVAVDIGNVFQ----------------- 60
           +THTNPTLLS I+ LSLLGNHEEDS+TGLSGR  AV IGNVF                  
Sbjct: 46  VTHTNPTLLSSIVSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQLF 105

Query: 61  ----------------------------------------------------FFDPFRDV 120
                                                                +  + DV
Sbjct: 106 GYAIFGFALTEAIAILCPLLRKLKFHSYNYLFEADSSQCSFYRYCKSQLMFPLYFHYEDV 165

Query: 121 SLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGK 143
           S QDPLLK N+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQT+RGS+GK
Sbjct: 166 SRQDPLLKPNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTERGSTGK 225

[Close]

BLAST of ClCG06G009270 vs. ExPASy TrEMBL
Match: A0A7D5Y005 (Ribosomal protein L5 OS=Luffa acutangula OX=56866 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.9e-41
Identity = 84/95 (88.42%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVS QDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFLESNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of ClCG06G009270 vs. ExPASy TrEMBL
Match: A0A6B9QFQ7 (Ribosomal protein L5 OS=Castanospermum australe OX=24962 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 41  VFQFFDPFRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQK 100
           +F  +  + DVS QDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQK
Sbjct: 1   MFPLYFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 101 FIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           FIQTQRGS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of ClCG06G009270 vs. ExPASy TrEMBL
Match: A0A385CAQ4 (Ribosomal protein L5 OS=Styphnolobium japonicum OX=3897 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.4e-40
Identity = 83/102 (81.37%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 41  VFQFFDPFRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQK 100
           +F  +  + DVS QDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQK
Sbjct: 1   MFPLYFHYEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 101 FIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           FIQTQ+GS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 61  FIQTQKGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of ClCG06G009270 vs. ExPASy TrEMBL
Match: A0A386JNB1 (Ribosomal protein L5 OS=Glycine soja OX=3848 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.2e-40
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVS QDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of ClCG06G009270 vs. TAIR 10
Match: AT2G07725.1 (Ribosomal L5P family protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.5e-42
Identity = 81/95 (85.26%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVS QDPLLK N+A VMEVPGSCEIR +PKAPY+FIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKPNHANVMEVPGSCEIRVVPKAPYNFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]

BLAST of ClCG06G009270 vs. TAIR 10
Match: ATMG00210.1 (ribosomal protein L5 )

HSP 1 Score: 169.9 bits (429), Expect = 1.5e-42
Identity = 81/95 (85.26%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVS QDPLLK N+A VMEVPGSCEIR +PKAPY+FIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKPNHANVMEVPGSCEIRVVPKAPYNFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

The following BLAST results are available for this feature:

BLAST of ClCG06G009270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4349909.1	4.6e-49	54.50	hypothetical protein G4B88_002331 [Cannabis sativa]	[more]
KAF3452179.1	1.3e-43	57.07	hypothetical protein FNV43_RR08277 [Rhamnella rubrinervis]	[more]
YP_009913650.1	1.0e-40	88.42	ribosomal protein L5 [Luffa acutangula] >QLJ93020.1 ribosomal protein L5 [Luffa ...	[more]
QHE65829.1	2.3e-40	82.35	ribosomal protein L5 [Castanospermum australe]	[more]
YP_009522804.1	5.1e-40	81.37	ribosomal protein L5 [Styphnolobium japonicum] >AXQ37258.1 ribosomal protein L5 ...	[more]

BLAST of ClCG06G009270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42793	2.6e-39	83.16	60S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL5 ...	[more]
Q05492	1.3e-35	78.35	60S ribosomal protein L5, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPL5 ...	[more]
P49388	3.9e-35	75.79	60S ribosomal protein L5, mitochondrial OS=Brassica napus OX=3708 GN=RPL5 PE=3 S...	[more]
P51409	5.6e-26	66.35	60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum OX=4113 GN=RPL5 PE=...	[more]
P26860	3.0e-19	58.59	60S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL5...	[more]

BLAST of ClCG06G009270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6DWT2	2.2e-49	54.50	ATP-synt_C domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_002331 ...	[more]
A0A7D5Y005	4.9e-41	88.42	Ribosomal protein L5 OS=Luffa acutangula OX=56866 GN=rpl5 PE=3 SV=1	[more]
A0A6B9QFQ7	1.1e-40	82.35	Ribosomal protein L5 OS=Castanospermum australe OX=24962 GN=rpl5 PE=3 SV=1	[more]
A0A385CAQ4	2.4e-40	81.37	Ribosomal protein L5 OS=Styphnolobium japonicum OX=3897 GN=rpl5 PE=3 SV=1	[more]
A0A386JNB1	3.2e-40	87.37	Ribosomal protein L5 OS=Glycine soja OX=3848 GN=rpl5 PE=3 SV=1	[more]

BLAST of ClCG06G009270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07725.1	1.5e-42	85.26	Ribosomal L5P family protein	[more]
ATMG00210.1	1.5e-42	85.26	ribosomal protein L5	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11994:SF34	RIBOSOMAL PROTEIN L5 DOMAIN-CONTAINING PROTEIN-RELATED	coord: 48..142
IPR002132	Ribosomal protein L5	PANTHER	PTHR11994	60S RIBOSOMAL PROTEIN L11-RELATED	coord: 48..142
IPR022803	Ribosomal protein L5 domain superfamily	SUPERFAMILY	55282	RL5-like	coord: 46..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G009270.1	ClCG06G009270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome