ClCG06G009220 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G009220
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	CG_Chr06: 15204786 .. 15205418 (+)
RNA-Seq Expression	ClCG06G009220
Synteny	ClCG06G009220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCAACATCCAATACCCAACTACCGGCACTACCAAAAGAGCAACCCTCTATCCCTACTCCGACGACCAATACTCATACCTCCTTTGTAACTCTTCCTCCGGGAACTTTACCTACTACCCCATATCACACTACTCGTCCTTTCAATCTCAATGTTTTCCCACTCTCCCCCACCTCCAATTTTCCTCCTCAAAATGATTTTCAATACCCTCCAACCCAGCCGGCGACTGTACCATTTTACAATGGTTTCACACCCACTAACCTTCCTCAACCTACTTCAAATTTTACCACCCTAACCCCCCCTCTTAACATCAAACTTTTAGACTCCAATTACCTCTTATGGGAGAAAAAATTATTGAATCATGTTATCATGTTTGGACTAGAAGGCTTCATCAATGGCATTGTCCAGAAGCCTCCACAATTTTTGGATGCTGCTCACACTCAAGTAAGTCCTACTTATATCAATTGGCAGAAGTGCAATCGCACCCTTATGAGTTGGATTGATTCCTCTCTTAATGAAGATAAATTAGGTGAAATTGTTGGTTATGATACTGCTTATGAAATCTGGGAATCTTTGCGTACTGTTTATGAATCATCTTCTACTGCTAAAATGATGGGTTTTCCATCTTAG

mRNA sequence

ATGGCGTCAACATCCAATACCCAACTACCGGCACTACCAAAAGAGCAACCCTCTATCCCTACTCCGACGACCAATACTCATACCTCCTTTGTAACTCTTCCTCCGGGAACTTTACCTACTACCCCATATCACACTACTCGTCCTTTCAATCTCAATGTTTTCCCACTCTCCCCCACCTCCAATTTTCCTCCTCAAAATGATTTTCAATACCCTCCAACCCAGCCGGCGACTGTACCATTTTACAATGGTTTCACACCCACTAACCTTCCTCAACCTACTTCAAATTTTACCACCCTAACCCCCCCTCTTAACATCAAACTTTTAGACTCCAATTACCTCTTATGGGAGAAAAAATTATTGAATCATGTTATCATGTTTGGACTAGAAGGCTTCATCAATGGCATTGTCCAGAAGCCTCCACAATTTTTGGATGCTGCTCACACTCAAGTAAGTCCTACTTATATCAATTGGCAGAAGTGCAATCGCACCCTTATGAGTTGGATTGATTCCTCTCTTAATGAAGATAAATTAGGTGAAATTGTTGGTTATGATACTGCTTATGAAATCTGGGAATCTTTGCGTACTGTTTATGAATCATCTTCTACTGCTAAAATGATGGGTTTTCCATCTTAG

Coding sequence (CDS)

ATGGCGTCAACATCCAATACCCAACTACCGGCACTACCAAAAGAGCAACCCTCTATCCCTACTCCGACGACCAATACTCATACCTCCTTTGTAACTCTTCCTCCGGGAACTTTACCTACTACCCCATATCACACTACTCGTCCTTTCAATCTCAATGTTTTCCCACTCTCCCCCACCTCCAATTTTCCTCCTCAAAATGATTTTCAATACCCTCCAACCCAGCCGGCGACTGTACCATTTTACAATGGTTTCACACCCACTAACCTTCCTCAACCTACTTCAAATTTTACCACCCTAACCCCCCCTCTTAACATCAAACTTTTAGACTCCAATTACCTCTTATGGGAGAAAAAATTATTGAATCATGTTATCATGTTTGGACTAGAAGGCTTCATCAATGGCATTGTCCAGAAGCCTCCACAATTTTTGGATGCTGCTCACACTCAAGTAAGTCCTACTTATATCAATTGGCAGAAGTGCAATCGCACCCTTATGAGTTGGATTGATTCCTCTCTTAATGAAGATAAATTAGGTGAAATTGTTGGTTATGATACTGCTTATGAAATCTGGGAATCTTTGCGTACTGTTTATGAATCATCTTCTACTGCTAAAATGATGGGTTTTCCATCTTAG

Protein sequence

MASTSNTQLPALPKEQPSIPTPTTNTHTSFVTLPPGTLPTTPYHTTRPFNLNVFPLSPTSNFPPQNDFQYPPTQPATVPFYNGFTPTNLPQPTSNFTTLTPPLNIKLLDSNYLLWEKKLLNHVIMFGLEGFINGIVQKPPQFLDAAHTQVSPTYINWQKCNRTLMSWIDSSLNEDKLGEIVGYDTAYEIWESLRTVYESSSTAKMMGFPS

Homology

[Close]

BLAST of ClCG06G009220 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 131.7 bits (330), Expect = 7.3e-27
Identity = 64/139 (46.04%), Postives = 89/139 (64.03%), Query Frame = 0


Query: 69  QYPPTQPATVPFYNGFTPTNLPQPTSNFTTLTPPLNIKLLDSNYLLWEKKLLNHVIMFGL 128
           Q+PP  P      N       P   + F TL  PLN+KL D+N+LLW+ +LLN VI  GL
Sbjct: 2   QFPPPTP------NFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGL 61

Query: 129 EGFINGIVQKPPQFLDAAHTQVSPTYINWQKCNRTLMSWIDSSLNEDKLGEIVGYDTAYE 188
            G+++G +  PPQFLD    Q +P Y  W++ NR LM WI SSL+E+K+GE+V  +T ++
Sbjct: 62  RGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHD 121

Query: 189 IWESLRTVYESSSTAKMMG 208
           IW SL  VY+S +TA++MG
Sbjct: 122 IWSSLTRVYDSKTTARIMG 134

[Close]

BLAST of ClCG06G009220 vs. NCBI nr
Match: GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])

HSP 1 Score: 114.8 bits (286), Expect = 9.2e-22
Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 0


Query: 72  PTQPATVPFYNGFTPTNLPQ-----PTSNFTTLTPPLNIKLLDSNYLLWEKKLLNHVIMF 131
           P  P + P  +   P   PQ     P  N  ++  PL +KL D NY++W+++LLN VI  
Sbjct: 15  PPPPTSNPLPSSSIPNPNPQILNTSPLPNMPSINQPLAVKLDDHNYIIWKEQLLNIVIAN 74

Query: 132 GLEGFINGIVQKPPQFLDAAHTQVSPTYINWQKCNRTLMSWIDSSLNEDKLGEIVGYDTA 191
           GLE F++G    PP+FLD    Q +P + +WQ+ NR +MSWI +S+NE  LG+IVGY +A
Sbjct: 75  GLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSA 134

Query: 192 YEIWESLRTVYESSSTAKM 206
            +IWE+L  +Y ++S A +
Sbjct: 135 SQIWEALERLYAAASFAHL 153

[Close]

BLAST of ClCG06G009220 vs. NCBI nr
Match: GFZ12741.1 (UBX domain-containing protein [Actinidia rufa])

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-21
Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 0


Query: 72  PTQPATVPFYNGFTPTNLPQ-----PTSNFTTLTPPLNIKLLDSNYLLWEKKLLNHVIMF 131
           P  P + P  +   P   PQ     P  N  ++  PL +KL D NY++W+++LLN VI  
Sbjct: 15  PPPPTSNPLPSSSIPKPNPQIINTSPLLNMPSINQPLAVKLDDHNYIIWKEQLLNIVIAN 74

Query: 132 GLEGFINGIVQKPPQFLDAAHTQVSPTYINWQKCNRTLMSWIDSSLNEDKLGEIVGYDTA 191
           GLE F++G    PP+FLD    Q +P + +WQ+ NR +MSWI +S+NE  LG+IVGY +A
Sbjct: 75  GLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSA 134

Query: 192 YEIWESLRTVYESSSTAKM 206
            +IWE+L  +Y ++S A +
Sbjct: 135 SQIWEALERLYAAASFAHL 153

[Close]

BLAST of ClCG06G009220 vs. NCBI nr
Match: PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale])

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-20
Identity = 64/149 (42.95%), Postives = 86/149 (57.72%), Query Frame = 0


Query: 57  SPTSNFPPQNDFQYPPTQPATVPFYNGFTPTNLPQPTSNFTTLTPPLNIKLLDSNYLLWE 116
           +PT   PP N    P  Q   +    G  P   P P     ++  P  IKL   NYL+W+
Sbjct: 15  NPTIQMPPTN---IPNVQDQII----GAQPPLPPLPI--LPSMNQPFTIKLDADNYLIWK 74

Query: 117 KKLLNHVIMFGLEGFINGIVQKPPQFLDAAHTQVSPTYINWQKCNRTLMSWIDSSLNEDK 176
            +LLN +I  GLE FI+G    PP+F D A   V+  YI WQ+ NR +MSWI +SL +  
Sbjct: 75  NQLLNVIIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQGV 134

Query: 177 LGEIVGYDTAYEIWESLRTVYESSSTAKM 206
           +G+IVGY +A+EIWE+L  +Y SSS AK+
Sbjct: 135 MGQIVGYASAFEIWEALNQIYTSSSLAKI 154

[Close]

BLAST of ClCG06G009220 vs. NCBI nr
Match: RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-18
Identity = 65/161 (40.37%), Postives = 90/161 (55.90%), Query Frame = 0


Query: 51  LNVFPLSPTSNF-PPQNDFQYPPTQPATVPFYNGFTPTNLPQPTSNFTTLTPPLNIKLLD 110
           ++ FP +P SN     N+ Q P  Q          T   LP P     +L+  L+IKL +
Sbjct: 1   MSTFPPTPASNSNTTTNNNQNPAPQ---------ITQMTLPSP-----SLSQSLSIKLDE 60

Query: 111 SNYLLWEKKLLNHVIMFGLEGFINGIVQKPPQFLDAAHTQVSPTYINWQKCNRTLMSWID 170
           +N LL + +LLN +I  GLE FI+     PP++LDAA  QV+P ++ W + N+ +MSWI 
Sbjct: 61  TNLLLRKSQLLNVIIANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIY 120

Query: 171 SSLNEDKLGEIVGYDTAYEIWESLRTVYESSSTAKMMGFPS 211
           SSL    +G+IV Y TA +IW SL   YES S A +M   S
Sbjct: 121 SSLTPGMVGQIVEYSTARDIWASLNDEYESPSIATVMSLNS 147

[Close]

BLAST of ClCG06G009220 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.5e-27
Identity = 64/139 (46.04%), Postives = 89/139 (64.03%), Query Frame = 0


Query: 69  QYPPTQPATVPFYNGFTPTNLPQPTSNFTTLTPPLNIKLLDSNYLLWEKKLLNHVIMFGL 128
           Q+PP  P      N       P   + F TL  PLN+KL D+N+LLW+ +LLN VI  GL
Sbjct: 2   QFPPPTP------NFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGL 61

Query: 129 EGFINGIVQKPPQFLDAAHTQVSPTYINWQKCNRTLMSWIDSSLNEDKLGEIVGYDTAYE 188
            G+++G +  PPQFLD    Q +P Y  W++ NR LM WI SSL+E+K+GE+V  +T ++
Sbjct: 62  RGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHD 121

Query: 189 IWESLRTVYESSSTAKMMG 208
           IW SL  VY+S +TA++MG
Sbjct: 122 IWSSLTRVYDSKTTARIMG 134

[Close]

BLAST of ClCG06G009220 vs. ExPASy TrEMBL
Match: A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.4e-22
Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 0


Query: 72  PTQPATVPFYNGFTPTNLPQ-----PTSNFTTLTPPLNIKLLDSNYLLWEKKLLNHVIMF 131
           P  P + P  +   P   PQ     P  N  ++  PL +KL D NY++W+++LLN VI  
Sbjct: 15  PPPPTSNPLPSSSIPNPNPQILNTSPLPNMPSINQPLAVKLDDHNYIIWKEQLLNIVIAN 74

Query: 132 GLEGFINGIVQKPPQFLDAAHTQVSPTYINWQKCNRTLMSWIDSSLNEDKLGEIVGYDTA 191
           GLE F++G    PP+FLD    Q +P + +WQ+ NR +MSWI +S+NE  LG+IVGY +A
Sbjct: 75  GLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSA 134

Query: 192 YEIWESLRTVYESSSTAKM 206
            +IWE+L  +Y ++S A +
Sbjct: 135 SQIWEALERLYAAASFAHL 153

[Close]

BLAST of ClCG06G009220 vs. ExPASy TrEMBL
Match: A0A7J0GPN0 (UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.6e-22
Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 0


Query: 72  PTQPATVPFYNGFTPTNLPQ-----PTSNFTTLTPPLNIKLLDSNYLLWEKKLLNHVIMF 131
           P  P + P  +   P   PQ     P  N  ++  PL +KL D NY++W+++LLN VI  
Sbjct: 15  PPPPTSNPLPSSSIPKPNPQIINTSPLLNMPSINQPLAVKLDDHNYIIWKEQLLNIVIAN 74

Query: 132 GLEGFINGIVQKPPQFLDAAHTQVSPTYINWQKCNRTLMSWIDSSLNEDKLGEIVGYDTA 191
           GLE F++G    PP+FLD    Q +P + +WQ+ NR +MSWI +S+NE  LG+IVGY +A
Sbjct: 75  GLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSA 134

Query: 192 YEIWESLRTVYESSSTAKM 206
            +IWE+L  +Y ++S A +
Sbjct: 135 SQIWEALERLYAAASFAHL 153

[Close]

BLAST of ClCG06G009220 vs. ExPASy TrEMBL
Match: A0A2P5BGF8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.4e-21
Identity = 64/149 (42.95%), Postives = 86/149 (57.72%), Query Frame = 0


Query: 57  SPTSNFPPQNDFQYPPTQPATVPFYNGFTPTNLPQPTSNFTTLTPPLNIKLLDSNYLLWE 116
           +PT   PP N    P  Q   +    G  P   P P     ++  P  IKL   NYL+W+
Sbjct: 15  NPTIQMPPTN---IPNVQDQII----GAQPPLPPLPI--LPSMNQPFTIKLDADNYLIWK 74

Query: 117 KKLLNHVIMFGLEGFINGIVQKPPQFLDAAHTQVSPTYINWQKCNRTLMSWIDSSLNEDK 176
            +LLN +I  GLE FI+G    PP+F D A   V+  YI WQ+ NR +MSWI +SL +  
Sbjct: 75  NQLLNVIIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQGV 134

Query: 177 LGEIVGYDTAYEIWESLRTVYESSSTAKM 206
           +G+IVGY +A+EIWE+L  +Y SSS AK+
Sbjct: 135 MGQIVGYASAFEIWEALNQIYTSSSLAKI 154

[Close]

BLAST of ClCG06G009220 vs. ExPASy TrEMBL
Match: A0A803NL56 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.6e-19
Identity = 56/151 (37.09%), Postives = 85/151 (56.29%), Query Frame = 0


Query: 65  QNDFQYP-------PTQPATVPFYNGFTPTNLPQPTSNFTTLTPPLNIKLLDSNYLLWEK 124
           QN  Q P       P   A  P     +  +LP    NF++    +++KL D+NYL+W  
Sbjct: 19  QNPIQNPTITNTQNPNTTAAPPISASSSSPSLP---PNFSSFNQTISVKLDDTNYLVWRM 78

Query: 125 KLLNHVIMFGLEGFINGIVQKPPQFLDAAHTQVSPTYINWQKCNRTLMSWIDSSLNEDKL 184
           ++ N +I  GLEG+I+G V    QF ++  +QV P +  W + N+ LMSW+ +SL++  L
Sbjct: 79  QMQNIIIANGLEGYIDGTVACSAQFPNSTSSQVDPAFTTWHRYNQLLMSWLYASLSDSML 138

Query: 185 GEIVGYDTAYEIWESLRTVYESSSTAKMMGF 209
           G+IVG+ TA EIW SL   Y ++S A+   F
Sbjct: 139 GQIVGFTTATEIWVSLERTYSATSFARSFDF 166

[Close]

BLAST of ClCG06G009220 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-08
Identity = 35/126 (27.78%), Postives = 64/126 (50.79%), Query Frame = 0


Query: 72  PTQPATVPFYNGFTPTNLPQPTSNFTTLTPPLNIKLLDSNYLLWEKKLLNHVIMFGLEGF 131
           PT     P+Y    P ++  P S+F+       +   + NY+ W+ +  + + +    GF
Sbjct: 10  PTSDPDSPYY---LPPDIHHP-SDFSI----QKLSKDEDNYVAWKIRFRSFLRVTKKFGF 69

Query: 132 INGIVQKPPQFLDAAHTQVSPTYINWQKCNRTLMSWIDSSLNEDKLGEIVGYDTAYEIWE 191
           I+G + KP  F        SP Y  W++CN  +M W+ +S+ +  L  ++  +TA+++WE
Sbjct: 70  IDGTLPKPDPF--------SPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWE 119

Query: 192 SLRTVY 198
            LR V+
Sbjct: 130 DLRRVF 119

The following BLAST results are available for this feature:

BLAST of ClCG06G009220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155181.1	7.3e-27	46.04	uncharacterized protein LOC111022315 [Momordica charantia]	[more]
GFY85402.1	9.2e-22	41.73	hypothetical protein Acr_04g0001400 [Actinidia rufa]	[more]
GFZ12741.1	1.6e-21	41.73	UBX domain-containing protein [Actinidia rufa]	[more]
PON47862.1	1.3e-20	42.95	hypothetical protein TorRG33x02_321990 [Trema orientale]	[more]
RVW69807.1	1.6e-18	40.37	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

BLAST of ClCG06G009220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG06G009220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQX7	3.5e-27	46.04	uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A7J0EGI5	4.4e-22	41.73	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1	[more]
A0A7J0GPN0	7.6e-22	41.73	UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4...	[more]
A0A2P5BGF8	6.4e-21	42.95	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV...	[more]
A0A803NL56	4.6e-19	37.09	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of ClCG06G009220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	2.1e-08	27.78	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR47481:SF3	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 95..205
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 95..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G009220.1	ClCG06G009220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0016020	membrane