ClCG06G009120 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G009120
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Retrotrans_gag domain-containing protein
Location	CG_Chr06: 14735848 .. 14736176 (-)
RNA-Seq Expression	ClCG06G009120
Synteny	ClCG06G009120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCGAGGAAGCTAGAAGGTCATCGGTAGAGCGAGTACAAGTTGAAGGACTAGTGACCCAAGGTAGGCGGCGAGATGATGCTCGTTTGTCCAGCTTAGAAGAAGGACAGGAAAATGTGCAACTTGCCGTTGGTCGATTGAGTGAAAAATATGAAGAGCTCGTCCAAGAAAGCTCGGAGATCACGGCAGTTGCCAAAAGAATGATCATGGAGCTTGGACGATGACGGGAGAAGAGGTAAGATCTCTTACTCAAGAAGTAGCCAACCTAAGGAAGTTCGTGGAAAGGGAACTCCACGATCTTCGCAAAGAGGTCGACGACATTTGA

mRNA sequence

ATGGCAACCGAGGAAGCTAGAAGGTCATCGGTAGAGCGAGTACAAGTTGAAGGACTAGTGACCCAAGGTAGGCGGCGAGATGATGCTCGTTTGTCCAGCTTAGAAGAAGGACAGGAAAATGTGCAACTTGCCGTTGGTCGATTGAGTGAAAAATATGAAGAGCTCCTCGGAGATCACGGCAGTTGCCAAAAGAATGATCATGGAGCTTGGACGATGACGGGAGAAGAGGTAAGATCTCTTACTCAAGAAGTAGCCAACCTAAGGAAGTTCGTGGAAAGGGAACTCCACGATCTTCGCAAAGAGGTCGACGACATTTGA

Coding sequence (CDS)

ATGGCAACCGAGGAAGCTAGAAGGTCATCGGTAGAGCGAGTACAAGTTGAAGGACTAGTGACCCAAGGTAGGCGGCGAGATGATGCTCGTTTGTCCAGCTTAGAAGAAGGACAGGAAAATGTGCAACTTGCCGTTGGTCGATTGAGTGAAAAATATGAAGAGCTCCTCGGAGATCACGGCAGTTGCCAAAAGAATGATCATGGAGCTTGGACGATGACGGGAGAAGAGGTAAGATCTCTTACTCAAGAAGTAGCCAACCTAAGGAAGTTCGTGGAAAGGGAACTCCACGATCTTCGCAAAGAGGTCGACGACATTTGA

Protein sequence

MATEEARRSSVERVQVEGLVTQGRRRDDARLSSLEEGQENVQLAVGRLSEKYEELLGDHGSCQKNDHGAWTMTGEEVRSLTQEVANLRKFVERELHDLRKEVDDI

Homology

[Close]

BLAST of ClCG06G009120 vs. NCBI nr
Match: KAA0065760.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.2e-07
Identity = 48/122 (39.34%), Postives = 65/122 (53.28%), Query Frame = 0


Query: 1   MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQ 60
           M+ EE   S VE+V +EG VT+GR+                    D RL++LE+G E+VQ
Sbjct: 1   MSAEEGHTSPVEQV-IEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQ 60

Query: 61  LAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEEVRSLTQEVANLRKFVERELH 99
           LAVGRLSE +EEL+ ++            D G      EE++ LT  V  L+ FVE ELH
Sbjct: 61  LAVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQ--EELKELTSTVTTLKAFVEGELH 119

[Close]

BLAST of ClCG06G009120 vs. NCBI nr
Match: KAA0042140.1 (uncharacterized protein E6C27_scaffold67G006290 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 7.1e-07
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 0


Query: 1   MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQ 60
           M+ EE   S VE+V +EG VT+GR++                   D RL++LE+G E+VQ
Sbjct: 154 MSAEEGHTSPVEQV-IEGPVTRGRKKQHSPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQ 213

Query: 61  LAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEEVRSLTQEVANLRKFVERELH 99
           LAVGRLSE +EEL+ ++            D G      +E++ L   V  L+ FVE ELH
Sbjct: 214 LAVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQ--KELKELASTVTTLKAFVEGELH 272

[Close]

BLAST of ClCG06G009120 vs. NCBI nr
Match: TYK18079.1 (uncharacterized protein E5676_scaffold306G004150 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 7.1e-07
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 0


Query: 1   MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQ 60
           M+ EE   S VE+V +EG VT+GR++                   D RL++LE+G E+VQ
Sbjct: 91  MSAEEGHTSPVEQV-IEGPVTRGRKKQHSPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQ 150

Query: 61  LAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEEVRSLTQEVANLRKFVERELH 99
           LAVGRLSE +EEL+ ++            D G      +E++ L   V  L+ FVE ELH
Sbjct: 151 LAVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQ--KELKELASTVTTLKAFVEGELH 209

[Close]

BLAST of ClCG06G009120 vs. NCBI nr
Match: KAA0040659.1 (uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 9.3e-07
Identity = 48/122 (39.34%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 1   MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQ 60
           M+ EE   S VE+V +EG VT+GR+                    D RL++LE+G E+VQ
Sbjct: 1   MSAEEGHTSPVEQV-IEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQ 60

Query: 61  LAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEEVRSLTQEVANLRKFVERELH 99
           LAVGRLSE +EEL+ ++            D G      +E+R L   V  L+ FVE ELH
Sbjct: 61  LAVGRLSEIFEELVQENAEITSVAKEMIEDMGRTFQ--KELRELASTVTTLKAFVEGELH 119

[Close]

BLAST of ClCG06G009120 vs. NCBI nr
Match: KAA0040414.1 (uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 47/122 (38.52%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 1   MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQ 60
           M+ EE   S VE+V +EG VT+GR+                    D RL++LE+G E+VQ
Sbjct: 1   MSAEEGHTSPVEQV-IEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQ 60

Query: 61  LAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEEVRSLTQEVANLRKFVERELH 99
           LAVGRLSE +EEL+ ++            D G      EE++ L   V  L+ FVE ELH
Sbjct: 61  LAVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQ--EELKELASTVTTLKAFVEGELH 119

[Close]

BLAST of ClCG06G009120 vs. ExPASy TrEMBL
Match: A0A5A7VEX8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-07
Identity = 48/122 (39.34%), Postives = 65/122 (53.28%), Query Frame = 0


Query: 1   MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQ 60
           M+ EE   S VE+V +EG VT+GR+                    D RL++LE+G E+VQ
Sbjct: 1   MSAEEGHTSPVEQV-IEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQ 60

Query: 61  LAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEEVRSLTQEVANLRKFVERELH 99
           LAVGRLSE +EEL+ ++            D G      EE++ LT  V  L+ FVE ELH
Sbjct: 61  LAVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQ--EELKELTSTVTTLKAFVEGELH 119

[Close]

BLAST of ClCG06G009120 vs. ExPASy TrEMBL
Match: A0A5D3D3V4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004150 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-07
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 0


Query: 1   MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQ 60
           M+ EE   S VE+V +EG VT+GR++                   D RL++LE+G E+VQ
Sbjct: 91  MSAEEGHTSPVEQV-IEGPVTRGRKKQHSPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQ 150

Query: 61  LAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEEVRSLTQEVANLRKFVERELH 99
           LAVGRLSE +EEL+ ++            D G      +E++ L   V  L+ FVE ELH
Sbjct: 151 LAVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQ--KELKELASTVTTLKAFVEGELH 209

[Close]

BLAST of ClCG06G009120 vs. ExPASy TrEMBL
Match: A0A5A7TFP3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006290 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-07
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 0


Query: 1   MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQ 60
           M+ EE   S VE+V +EG VT+GR++                   D RL++LE+G E+VQ
Sbjct: 154 MSAEEGHTSPVEQV-IEGPVTRGRKKQHSPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQ 213

Query: 61  LAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEEVRSLTQEVANLRKFVERELH 99
           LAVGRLSE +EEL+ ++            D G      +E++ L   V  L+ FVE ELH
Sbjct: 214 LAVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQ--KELKELASTVTTLKAFVEGELH 272

[Close]

BLAST of ClCG06G009120 vs. ExPASy TrEMBL
Match: A0A5A7THC0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold370G00130 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.5e-07
Identity = 48/122 (39.34%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 1   MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQ 60
           M+ EE   S VE+V +EG VT+GR+                    D RL++LE+G E+VQ
Sbjct: 1   MSAEEGHTSPVEQV-IEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQ 60

Query: 61  LAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEEVRSLTQEVANLRKFVERELH 99
           LAVGRLSE +EEL+ ++            D G      +E+R L   V  L+ FVE ELH
Sbjct: 61  LAVGRLSEIFEELVQENAEITSVAKEMIEDMGRTFQ--KELRELASTVTTLKAFVEGELH 119

[Close]

BLAST of ClCG06G009120 vs. ExPASy TrEMBL
Match: A0A5A7TAA5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00340 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.9e-07
Identity = 47/122 (38.52%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 1   MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQ 60
           M+ EE   S VE+V +EG VT+GR+                    D RL++LE+G E+VQ
Sbjct: 1   MSAEEGHTSPVEQV-IEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQ 60

Query: 61  LAVGRLSEKYEELLGDHGSCQK------NDHGAWTMTGEEVRSLTQEVANLRKFVERELH 99
           LAVGRLSE +EEL+ ++            D G      EE++ L   V  L+ FVE ELH
Sbjct: 61  LAVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQ--EELKELASTVTTLKAFVEGELH 119

The following BLAST results are available for this feature:

BLAST of ClCG06G009120 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065760.1	3.2e-07	39.34	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0042140.1	7.1e-07	38.52	uncharacterized protein E6C27_scaffold67G006290 [Cucumis melo var. makuwa]	[more]
TYK18079.1	7.1e-07	38.52	uncharacterized protein E5676_scaffold306G004150 [Cucumis melo var. makuwa]	[more]
KAA0040659.1	9.3e-07	39.34	uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa]	[more]
KAA0040414.1	1.2e-06	38.52	uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]	[more]

BLAST of ClCG06G009120 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG06G009120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VEX8	1.5e-07	39.34	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=...	[more]
A0A5D3D3V4	3.4e-07	38.52	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TFP3	3.4e-07	38.52	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7THC0	4.5e-07	39.34	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7TAA5	5.9e-07	38.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of ClCG06G009120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 81..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G009120.1	ClCG06G009120.1	mRNA