Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACTTGGTTCTCAACTACAAAAAATTAAGAAGGATGGTTTGACTGTTTCTCAACATCTTGCTCAAATAAAGGATGCATCTGATAAGTTTTCAGCCATTGGTGAGCCACTATCATACAGAGATCACCTTGGTTATATCCTAGACGGATTAGAAAATGAGTATAATCTGTTTGTTACATCTATTCAGAATCATACTGATTGACCTTTGCTTGCAGATGTCTGCAGTTTATTACTTGCTTACGAAGCACGATTGGAGAAGCAAATTGCAGTTGATAAGCTTAATCTTGTACAAGTTAATGTTGCACAGATGACCTTAAATCAGAATCCAAAACGATTGAATTGGCATTCAAATGGTAAATCTTCTAGCTCTAAGTTTTCGATGCTGCCAAATTCGAATCCTAGAATCTTTAATCCACCTAATTCTAGCCCACCCTTTAATCAACCTAGACCAAACTTCCGCCCAAATTCCCGCCCTGATAGACCTCAATATCAAATTTGTACAAAATTTGGACACATCGCCCTCGTTTGCCACAATCGCCATAATCCATTCTACCAAGTTGCTCCCCAGTCATCCTCTGTTGTTAGGCCACAAGCTCACCTTAATTAA
mRNA sequence
ATGGGACTTGGTTCTCAACTACAAAAAATTAAGAAGGATGGTTTGACTGTTTCTCAACATCTTGCTCAAATAAAGGATGCATCTGATAAGTTTTCAGCCATTGATGTCTGCAGTTTATTACTTGCTTACGAAGCACGATTGGAGAAGCAAATTGCAGTTGATAAGCTTAATCTTGTACAAGTTAATGTTGCACAGATGACCTTAAATCAGAATCCAAAACGATTGAATTGGCATTCAAATGGTAAATCTTCTAGCTCTAAGTTTTCGATGCTGCCAAATTCGAATCCTAGAATCTTTAATCCACCTAATTCTAGCCCACCCTTTAATCAACCTAGACCAAACTTCCGCCCAAATTCCCGCCCTGATAGACCTCAATATCAAATTTGTACAAAATTTGGACACATCGCCCTCGTTTGCCACAATCGCCATAATCCATTCTACCAAGTTGCTCCCCAGTCATCCTCTGTTGTTAGGCCACAAGCTCACCTTAATTAA
Coding sequence (CDS)
ATGGGACTTGGTTCTCAACTACAAAAAATTAAGAAGGATGGTTTGACTGTTTCTCAACATCTTGCTCAAATAAAGGATGCATCTGATAAGTTTTCAGCCATTGATGTCTGCAGTTTATTACTTGCTTACGAAGCACGATTGGAGAAGCAAATTGCAGTTGATAAGCTTAATCTTGTACAAGTTAATGTTGCACAGATGACCTTAAATCAGAATCCAAAACGATTGAATTGGCATTCAAATGGTAAATCTTCTAGCTCTAAGTTTTCGATGCTGCCAAATTCGAATCCTAGAATCTTTAATCCACCTAATTCTAGCCCACCCTTTAATCAACCTAGACCAAACTTCCGCCCAAATTCCCGCCCTGATAGACCTCAATATCAAATTTGTACAAAATTTGGACACATCGCCCTCGTTTGCCACAATCGCCATAATCCATTCTACCAAGTTGCTCCCCAGTCATCCTCTGTTGTTAGGCCACAAGCTCACCTTAATTAA
Protein sequence
MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAIDVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMTLNQNPKRLNWHSNGKSSSSKFSMLPNSNPRIFNPPNSSPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQVAPQSSSVVRPQAHLN
Homology
BLAST of ClCG06G009010 vs. NCBI nr
Match:
XP_038891713.1 (uncharacterized protein LOC120081111 [Benincasa hispida])
HSP 1 Score: 87.0 bits (214), Expect = 1.6e-13
Identity = 72/205 (35.12%), Postives = 102/205 (49.76%), Query Frame = 0
Query: 1 MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAI-------------------------- 60
M L ++LQKI+KD L++SQ+L+QIKD +DKFS +
Sbjct: 1 MSLKARLQKIRKDNLSLSQYLSQIKDVADKFSVVGESISYRDHLTHILDGLGSEYNAFVT 60
Query: 61 ------------DVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMTLNQNPKRLNWHSNGK 120
DV SLLL+YEA+LEKQ A+D LN+ Q +++++ N KR N
Sbjct: 61 SIQNHVDNLSVEDVWSLLLSYEAQLEKQNAIDHLNIAQAYLSKLSFQHNSKR-NALRPFP 120
Query: 121 SSSSKFSMLPNSNPRIFNPPNS---SPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVC 165
+ SS PN +P + + NS P FN+ P +P S +PQ QI KFGHI C
Sbjct: 121 NHSSLILPSPNFSPILPSTSNSVHARPSFNKKWPPSKPPS--SKPQCQIYHKFGHIVPQC 180
BLAST of ClCG06G009010 vs. NCBI nr
Match:
XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])
HSP 1 Score: 79.3 bits (194), Expect = 3.3e-11
Identity = 64/196 (32.65%), Postives = 97/196 (49.49%), Query Frame = 0
Query: 1 MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAI-------------------------- 60
MGL ++LQ ++KDG +VSQ+LA+IK+ +DKF+A+
Sbjct: 133 MGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDGLGSEYNAFVT 192
Query: 61 ------------DVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMTLNQNPKR----LNWH 120
DV SLLLAYEARL+KQ VD+LN+ Q N+ ++L N KR ++
Sbjct: 193 SIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLVNLSLQHNSKRPPPKFSFP 252
Query: 121 SNGKSSSSKFSMLPNSNPRIFNPPNSSPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALV 154
++ K S + + I P S + P+P+ + Q QIC K GH A V
Sbjct: 253 NHYKHSFPNSPISAAQSQSILGKPQSVHKW-PPKPS------SSKIQCQICGKLGHSAAV 312
BLAST of ClCG06G009010 vs. NCBI nr
Match:
XP_022148871.1 (uncharacterized protein LOC111017438 [Momordica charantia])
HSP 1 Score: 75.5 bits (184), Expect = 4.8e-10
Identity = 63/187 (33.69%), Postives = 92/187 (49.20%), Query Frame = 0
Query: 6 QLQKIKKDGLTVSQHLAQIKDASDKFSAI------------------------------- 65
++Q++KKDGL+VSQ+LA+IK+ + K S+I
Sbjct: 7 EIQQVKKDGLSVSQYLAKIKEITGKLSSIGEPISLKDHISYIIEGLGIEYNAFVTSIQNR 66
Query: 66 -------DVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMTLNQNPKRLNWHSNGKSSSSK 125
DV +LLLAY+ RLEKQ +VD+LN+VQ NVA + LN R + H+ S+
Sbjct: 67 SDMXTLEDVRTLLLAYDYRLEKQNSVDQLNVVQANVANLQLN----RQSGHTRNHRVPSQ 126
Query: 126 FSMLP---NSNPRIFNPP--NSSPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNR 150
S P + P + P NS PP+ P + + R + Q QIC K GH C++R
Sbjct: 127 HSPRPFNFKTQPGLLGKPNQNSQPPW----PPSQQSPRNPKVQCQICFKLGHTTSKCYHR 185
BLAST of ClCG06G009010 vs. NCBI nr
Match:
XP_038887133.1 (uncharacterized protein LOC120077323 [Benincasa hispida])
HSP 1 Score: 75.5 bits (184), Expect = 4.8e-10
Identity = 53/140 (37.86%), Postives = 67/140 (47.86%), Query Frame = 0
Query: 1 MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAI-------------------------- 60
MG SQLQKIKKDGLTVSQ+LAQIKD D F+AI
Sbjct: 30 MGFCSQLQKIKKDGLTVSQYLAQIKDVLDNFAAIGEPLSYRDHLSYILEGLGSEYNPFVS 89
Query: 61 ------------DVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMTLNQNPKRLNWHSNGK 103
DV +LL+ Y++RLEKQ A D L L+Q NVA +++N + W + +
Sbjct: 90 SIHNRTNRPSIADVRNLLITYDSRLEKQTATDHLQLIQANVAHLSINSQNRHPQWQQHNR 149
BLAST of ClCG06G009010 vs. NCBI nr
Match:
RVW57887.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])
HSP 1 Score: 67.8 bits (164), Expect = 1.0e-07
Identity = 65/183 (35.52%), Postives = 87/183 (47.54%), Query Frame = 0
Query: 1 MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAIDVCSLLLAYEARLEKQI--------- 60
+GL SQLQKIKK+G+T+S++LA+IK DK+SA+ L+Y+ +L +
Sbjct: 31 LGLNSQLQKIKKEGITISEYLARIKKVFDKYSAM---GEPLSYKDKLMHTLNGLTEKYDG 90
Query: 61 -------AVDKLNLVQVNVAQMTLNQNPKRLNWHSNGKSSSSKFSMLPNSNPRIFNPPNS 120
DK L +V+ T RL + + S PNS P I P
Sbjct: 91 FVISIYNRSDKPYLEEVHSLLYTYEY---RLEQRNTAQQLQLPQSFRPNSQPSILGKPQG 150
Query: 121 SPPF------NQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQVAPQ-SSSVV 161
P NQ NF+P R Q QIC KF HIAL C++R N YQ PQ +S
Sbjct: 151 QPQSSSKWFQNQGTRNFKP-----RTQCQICRKFSHIALNCYHRANLNYQ--PQFPNSQP 200
BLAST of ClCG06G009010 vs. ExPASy TrEMBL
Match:
A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 64/196 (32.65%), Postives = 97/196 (49.49%), Query Frame = 0
Query: 1 MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAI-------------------------- 60
MGL ++LQ ++KDG +VSQ+LA+IK+ +DKF+A+
Sbjct: 133 MGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDGLGSEYNAFVT 192
Query: 61 ------------DVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMTLNQNPKR----LNWH 120
DV SLLLAYEARL+KQ VD+LN+ Q N+ ++L N KR ++
Sbjct: 193 SIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLVNLSLQHNSKRPPPKFSFP 252
Query: 121 SNGKSSSSKFSMLPNSNPRIFNPPNSSPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALV 154
++ K S + + I P S + P+P+ + Q QIC K GH A V
Sbjct: 253 NHYKHSFPNSPISAAQSQSILGKPQSVHKW-PPKPS------SSKIQCQICGKLGHSAAV 312
BLAST of ClCG06G009010 vs. ExPASy TrEMBL
Match:
A0A6J1D6N7 (uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017438 PE=4 SV=1)
HSP 1 Score: 75.5 bits (184), Expect = 2.3e-10
Identity = 63/187 (33.69%), Postives = 92/187 (49.20%), Query Frame = 0
Query: 6 QLQKIKKDGLTVSQHLAQIKDASDKFSAI------------------------------- 65
++Q++KKDGL+VSQ+LA+IK+ + K S+I
Sbjct: 7 EIQQVKKDGLSVSQYLAKIKEITGKLSSIGEPISLKDHISYIIEGLGIEYNAFVTSIQNR 66
Query: 66 -------DVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMTLNQNPKRLNWHSNGKSSSSK 125
DV +LLLAY+ RLEKQ +VD+LN+VQ NVA + LN R + H+ S+
Sbjct: 67 SDMXTLEDVRTLLLAYDYRLEKQNSVDQLNVVQANVANLQLN----RQSGHTRNHRVPSQ 126
Query: 126 FSMLP---NSNPRIFNPP--NSSPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNR 150
S P + P + P NS PP+ P + + R + Q QIC K GH C++R
Sbjct: 127 HSPRPFNFKTQPGLLGKPNQNSQPPW----PPSQQSPRNPKVQCQICFKLGHTTSKCYHR 185
BLAST of ClCG06G009010 vs. ExPASy TrEMBL
Match:
A0A438FD18 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1743 PE=4 SV=1)
HSP 1 Score: 67.8 bits (164), Expect = 4.9e-08
Identity = 65/183 (35.52%), Postives = 87/183 (47.54%), Query Frame = 0
Query: 1 MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAIDVCSLLLAYEARLEKQI--------- 60
+GL SQLQKIKK+G+T+S++LA+IK DK+SA+ L+Y+ +L +
Sbjct: 31 LGLNSQLQKIKKEGITISEYLARIKKVFDKYSAM---GEPLSYKDKLMHTLNGLTEKYDG 90
Query: 61 -------AVDKLNLVQVNVAQMTLNQNPKRLNWHSNGKSSSSKFSMLPNSNPRIFNPPNS 120
DK L +V+ T RL + + S PNS P I P
Sbjct: 91 FVISIYNRSDKPYLEEVHSLLYTYEY---RLEQRNTAQQLQLPQSFRPNSQPSILGKPQG 150
Query: 121 SPPF------NQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQVAPQ-SSSVV 161
P NQ NF+P R Q QIC KF HIAL C++R N YQ PQ +S
Sbjct: 151 QPQSSSKWFQNQGTRNFKP-----RTQCQICRKFSHIALNCYHRANLNYQ--PQFPNSQP 200
BLAST of ClCG06G009010 vs. ExPASy TrEMBL
Match:
A5BPS3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_013628 PE=4 SV=1)
HSP 1 Score: 61.6 bits (148), Expect = 3.5e-06
Identity = 66/209 (31.58%), Postives = 89/209 (42.58%), Query Frame = 0
Query: 9 KIKKDGLTVSQHLAQIKDASDKFSAI---------------------------------- 68
KIKK+G+T+S++LA+IK+ DK+SA+
Sbjct: 75 KIKKEGITISEYLARIKEVFDKYSAMGEPLSYRDKLMYTLNGLTEEYDGFVTSIYNRSDK 134
Query: 69 ----DVCSLLLAYEARLEKQIAVDKLNLVQVNVA------QMTLNQNPKRLNWHSNGKSS 128
+V SLL Y LE++ +L QVN+ + NQ P + N SS
Sbjct: 135 SSLKEVHSLLYTYAYWLEQRNTAQQLQFSQVNLTAYSGQNKFHKNQQPNFPKYPQNSYSS 194
Query: 129 ------SSKFSMLPNSNPRIFNPPNSSPPFN------QPRPNFRPNSRPDRPQYQICTKF 161
+ S PNS P I P P + Q NF P RPQ QIC KF
Sbjct: 195 FPNKPINLYQSFRPNSQPSILGKPQGQPQSSSKWFQKQGTGNFGP-----RPQCQICGKF 254
BLAST of ClCG06G009010 vs. ExPASy TrEMBL
Match:
A0A7J0E8R3 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_02g0010880 PE=4 SV=1)
HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 59/187 (31.55%), Postives = 87/187 (46.52%), Query Frame = 0
Query: 3 LGSQLQKIKKDGLTVSQHLAQIKDASDKFSAI---------------------------- 62
L + LQ IKKDGLT ++ + + + ++I
Sbjct: 44 LRTALQTIKKDGLTALAYIQKFRHLCNSLASIGEPVTYTDHLIYFLGGLGRDYNPFVTSI 103
Query: 63 ----------DVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMTLNQNPKRLNWHSNGKSS 122
+V SLLL+Y+ARLE+Q A D L+ +Q N+A +T Q PK N +N +
Sbjct: 104 QSQAIRPSIEEVHSLLLSYDARLERQSATDTLSSLQANLANLTY-QKPKFKNPSTNSFPN 163
Query: 123 SSKFSMLPNSNPRIFNPPNSSPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHN 152
S+ + S+PR N +P ++ PN P+S RP+ QIC K GH A C++R N
Sbjct: 164 SNSY-----SHPR---GQNRNPSYS---PN--PSSPKPRPRCQICLKPGHTANKCYHRTN 216
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038891713.1 | 1.6e-13 | 35.12 | uncharacterized protein LOC120081111 [Benincasa hispida] | [more] |
XP_022155181.1 | 3.3e-11 | 32.65 | uncharacterized protein LOC111022315 [Momordica charantia] | [more] |
XP_022148871.1 | 4.8e-10 | 33.69 | uncharacterized protein LOC111017438 [Momordica charantia] | [more] |
XP_038887133.1 | 4.8e-10 | 37.86 | uncharacterized protein LOC120077323 [Benincasa hispida] | [more] |
RVW57887.1 | 1.0e-07 | 35.52 | Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DQX7 | 1.6e-11 | 32.65 | uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A6J1D6N7 | 2.3e-10 | 33.69 | uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017... | [more] |
A0A438FD18 | 4.9e-08 | 35.52 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... | [more] |
A5BPS3 | 3.5e-06 | 31.58 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_013628 PE=4 SV=1 | [more] |
A0A7J0E8R3 | 1.0e-05 | 31.55 | Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_02g0010880 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |