ClCG06G008495 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G008495
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	serine-rich protein-related
Location	CG_Chr06: 12356574 .. 12357219 (-)
RNA-Seq Expression	ClCG06G008495
Synteny	ClCG06G008495

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAACAAATTTACAAGTTTATGAAGATTAAACCTTTCAACAACCAAAGTCCATGGTATTTTCAATTTTGTATAATATAACTTCAAAACTTACCTCAAATAATTGTGATAGGCATTGACACGTGGCATAATCATACTGCTTCAGATCCACTCCCTGTTTATATAAAACCGCAATCTGTAGTTTCCCCAATTTGCTTTGCAAAAATGGCATCCCACGGCAAAATGAGCATCAGCATCCCTTCCTCCGCCAAAAGCGCCGGCGAGGGAGACGGCGTGGCGGCGCACTCCTGTTCATCGAAAGGCCAATGCCTCTGCTCACCCACGACTCATCTCGGTTCCTTCCGGTGCCGGCTTCACCGTTCGAATTCGTTGCCCTGGAGCAGGCAGTCCAAGTCCGCCGCCGCATCGGCCGACGCCTCTCACACCTCAGATCTCTCTCCAAAGTCAGTTGAATCTGCTTGATTTTTCACTCGCCCTTCAATTTCGATTTATCCGAAACAAATAATGAAATCCTCTGTAAATATTTATGTCTTCCTCTCTCTCTCTCTCTCTCGTTAATTAAATACCAGAATCGGTTTCTATCCGTCTGTTTGTTTCCATGGCGATCCTTTGATTTTAATTTCGGATAATTTCTCCTCTTTTTTTTTT

mRNA sequence

TGAACAAATTTACAAGTTTATGAAGATTAAACCTTTCAACAACCAAAGTCCATGGTATTTTCAATTTTGTATAATATAACTTCAAAACTTACCTCAAATAATTGTGATAGGCATTGACACGTGGCATAATCATACTGCTTCAGATCCACTCCCTGTTTATATAAAACCGCAATCTGTAGTTTCCCCAATTTGCTTTGCAAAAATGGCATCCCACGGCAAAATGAGCATCAGCATCCCTTCCTCCGCCAAAAGCGCCGGCGAGGGAGACGGCGTGGCGGCGCACTCCTGTTCATCGAAAGGCCAATGCCTCTGCTCACCCACGACTCATCTCGGTTCCTTCCGGTGCCGGCTTCACCGTTCGAATTCGTTGCCCTGGAGCAGGCAGTCCAAGTCCGCCGCCGCATCGGCCGACGCCTCTCACACCTCAGATCTCTCTCCAAAGTCAGTTGAATCTGCTTGATTTTTCACTCGCCCTTCAATTTCGATTTATCCGAAACAAATAATGAAATCCTCTGTAAATATTTATGTCTTCCTCTCTCTCTCTCTCTCTCGTTAATTAAATACCAGAATCGGTTTCTATCCGTCTGTTTGTTTCCATGGCGATCCTTTGATTTTAATTTCGGATAATTTCTCCTCTTTTTTTTTT

Coding sequence (CDS)

ATGGCATCCCACGGCAAAATGAGCATCAGCATCCCTTCCTCCGCCAAAAGCGCCGGCGAGGGAGACGGCGTGGCGGCGCACTCCTGTTCATCGAAAGGCCAATGCCTCTGCTCACCCACGACTCATCTCGGTTCCTTCCGGTGCCGGCTTCACCGTTCGAATTCGTTGCCCTGGAGCAGGCAGTCCAAGTCCGCCGCCGCATCGGCCGACGCCTCTCACACCTCAGATCTCTCTCCAAAGTCAGTTGAATCTGCTTGA

Protein sequence

MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHLGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVESA

Homology

[Close]

BLAST of ClCG06G008495 vs. NCBI nr
Match: KAA0046595.1 (hypothetical protein E6C27_scaffold114G001360 [Cucumis melo var. makuwa] >TYK00101.1 hypothetical protein E5676_scaffold596G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 2.8e-30
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHLGSFRCRLHRSNSLPWSR 60
          M S  KMSISIPS+AKSAG+GDGVA HSCSSK QCLCSPTTH GSFRCRLHRSNSLPWSR
Sbjct: 1  MGSQPKMSISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSR 60

Query: 61 QSKSAAASADASHTSDLSPKSVESA 86
          QSKS AASADAS+TSDLSPKSVESA
Sbjct: 61 QSKSTAASADASNTSDLSPKSVESA 85

[Close]

BLAST of ClCG06G008495 vs. NCBI nr
Match: KAG6589904.1 (hypothetical protein SDJN03_15327, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023574.1 hypothetical protein SDJN02_14600, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 4.1e-29
Identity = 71/85 (83.53%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHLGSFRCRLHRSNSLPWSR 60
          M++HGK+ ISIPSSAKS G+GDGVAAH+CSSKGQCLCSPTTH GSFRCRLHRSNSLPW+R
Sbjct: 1  MSAHGKIRISIPSSAKSVGDGDGVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTR 60

Query: 61 QSK-SAAASADASHTSDLSPKSVES 85
           SK +A++SADASHTSDLSPKSVES
Sbjct: 61 HSKTTASSSADASHTSDLSPKSVES 85

[Close]

BLAST of ClCG06G008495 vs. NCBI nr
Match: KAE8653119.1 (hypothetical protein Csa_020123 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 3.5e-28
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 6   KMSISIPSSAKSAGEGDGVA--AHSCSSKGQCLCSPTTHLGSFRCRLHRSNSLPWSRQSK 65
           KMSI IPS+AKSAGEGDGV   +HSCSSKGQCLCSPTTH GSFRCRLHRSNSLPWSRQSK
Sbjct: 41  KMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSK 100

Query: 66  SAAASADASHTSDLSPKSVESA 86
           S AASADAS+TSDLSPKSVESA
Sbjct: 101 STAASADASNTSDLSPKSVESA 122

[Close]

BLAST of ClCG06G008495 vs. NCBI nr
Match: KAF3961111.1 (hypothetical protein CMV_014232 [Castanea mollissima])

HSP 1 Score: 77.0 bits (188), Expect = 8.6e-11
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHLGSFRCRLHRSNSLPWSR 60
          MASHG +++   S++  +GEG+ V   S S KGQCLCSPTTH GSFRCR HRS+S  W +
Sbjct: 1  MASHGNLTV---STSPKSGEGEAVTTSSGSPKGQCLCSPTTHQGSFRCRFHRSSSSAWMK 60

Query: 61 QSKSAAASADASHTSDLSPKSVES 85
          +SK+  A+      +  SPKSVES
Sbjct: 61 RSKAMPANGS---VAAFSPKSVES 78

[Close]

BLAST of ClCG06G008495 vs. NCBI nr
Match: OUZ99929.1 (hypothetical protein BVC80_9069g38 [Macleaya cordata])

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGVAAHSCSS-KGQCLCSPTTHLGSFRCRLHRSNSLPW- 60
          M SHG +++S+  S K  G G  VA  S +S KGQCLCSPTTH GSFRCR HRS S  W 
Sbjct: 1  MTSHGTINVSL--SPKGNGNGQPVATASTNSPKGQCLCSPTTHNGSFRCRFHRSLSSTWR 60

Query: 61 SRQSKSAAASADASHTSDLSPKSVES 85
           ++SKS  A++ A+ T+ +SPKSVES
Sbjct: 61 MKRSKSMPANSTAAATTSISPKSVES 84

[Close]

BLAST of ClCG06G008495 vs. ExPASy TrEMBL
Match: A0A5D3BJV5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00570 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHLGSFRCRLHRSNSLPWSR 60
          M S  KMSISIPS+AKSAG+GDGVA HSCSSK QCLCSPTTH GSFRCRLHRSNSLPWSR
Sbjct: 1  MGSQPKMSISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSR 60

Query: 61 QSKSAAASADASHTSDLSPKSVESA 86
          QSKS AASADAS+TSDLSPKSVESA
Sbjct: 61 QSKSTAASADASNTSDLSPKSVESA 85

[Close]

BLAST of ClCG06G008495 vs. ExPASy TrEMBL
Match: A0A0A0LWJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369490 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.6e-29
Identity = 75/87 (86.21%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGVA--AHSCSSKGQCLCSPTTHLGSFRCRLHRSNSLPW 60
          M S  KMSI IPS+AKSAGEGDGV   +HSCSSKGQCLCSPTTH GSFRCRLHRSNSLPW
Sbjct: 1  MGSQAKMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW 60

Query: 61 SRQSKSAAASADASHTSDLSPKSVESA 86
          SRQSKS AASADAS+TSDLSPKSVESA
Sbjct: 61 SRQSKSTAASADASNTSDLSPKSVESA 87

[Close]

BLAST of ClCG06G008495 vs. ExPASy TrEMBL
Match: A0A200PNZ0 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9069g38 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.1e-11
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGVAAHSCSS-KGQCLCSPTTHLGSFRCRLHRSNSLPW- 60
          M SHG +++S+  S K  G G  VA  S +S KGQCLCSPTTH GSFRCR HRS S  W 
Sbjct: 1  MTSHGTINVSL--SPKGNGNGQPVATASTNSPKGQCLCSPTTHNGSFRCRFHRSLSSTWR 60

Query: 61 SRQSKSAAASADASHTSDLSPKSVES 85
           ++SKS  A++ A+ T+ +SPKSVES
Sbjct: 61 MKRSKSMPANSTAAATTSISPKSVES 84

[Close]

BLAST of ClCG06G008495 vs. ExPASy TrEMBL
Match: A0A5N6QHE2 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003263 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHLGSFRCRLHRSNSLPWSR 60
          MASHG +++   S++  +G+ + V   S S KGQCLCSPTTH GSFRCR HRS+S  W +
Sbjct: 1  MASHGSLTV---STSPKSGKEEPVGGASSSPKGQCLCSPTTHQGSFRCRFHRSSSSAWMK 60

Query: 61 QSKSAAASADASHTSDLSPKSVES 85
          +SKS  A    S  + +SPKS+ES
Sbjct: 61 RSKSVPAK--TSSVASMSPKSIES 79

[Close]

BLAST of ClCG06G008495 vs. ExPASy TrEMBL
Match: A0A6N2KNM0 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS113710 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.0e-10
Identity = 50/85 (58.82%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGV-AAHSCSSKGQCLCSPTTHLGSFRCRLHRSNSLPWS 60
          MASHG +SI   S++  +G G+GV AA S S KGQCLCSPTTH GSFRCRLHRS S   S
Sbjct: 1  MASHGNLSI---STSPESGNGEGVGAAASGSPKGQCLCSPTTHQGSFRCRLHRSRSSAAS 60

Query: 61 RQSKSAAASADASHTSDLSPKSVES 85
             +S +     + TS LSPKSVES
Sbjct: 61 MMKRSKSMPPKNAPTS-LSPKSVES 81

[Close]

BLAST of ClCG06G008495 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-05
Identity = 34/82 (41.46%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 5  GKMSISIPSSAKSAGE--GDGVAAHSCSSKGQCLCSPTTHLGSFRCRLHRSNSLPWSRQS 64
          G M + I S   SA E    G++  +  +K  CLCSPTTH GSFRCR+HRS SL  ++  
Sbjct: 12 GIMKVEIHSHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTK-- 71

Query: 65 KSAAASADASHTSDLSPKSVES 85
               S +A+   D  PK  +S
Sbjct: 72 -----SIEAASLLDSPPKPADS 86

[Close]

BLAST of ClCG06G008495 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-05
Identity = 34/82 (41.46%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 5  GKMSISIPSSAKSAGE--GDGVAAHSCSSKGQCLCSPTTHLGSFRCRLHRSNSLPWSRQS 64
          G M + I S   SA E    G++  +  +K  CLCSPTTH GSFRCR+HRS SL  ++  
Sbjct: 12 GIMKVEIHSHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTK-- 71

Query: 65 KSAAASADASHTSDLSPKSVES 85
               S +A+   D  PK  +S
Sbjct: 72 -----SIEAASLLDSPPKPADS 86

[Close]

BLAST of ClCG06G008495 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related )

HSP 1 Score: 44.3 bits (103), Expect = 5.7e-05
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 30 SSKGQCLCSPTTHLGSFRCRLHRSNSL 57
          S++  CLCSPTTH GSFRCR HR +SL
Sbjct: 59 STRLNCLCSPTTHAGSFRCRYHRVDSL 85

[Close]

BLAST of ClCG06G008495 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 42.4 bits (98), Expect = 2.2e-04
Identity = 23/46 (50.00%), Postives = 27/46 (58.70%), Query Frame = 0


Query: 12 PSSAKSAGEGDGVAAHSCSS--KGQCLCSPTTHLGSFRCRLHRSNS 56
          P   +  G G G    S SS  +  CLC+PTTH GSFRCR HR N+
Sbjct: 40 PRVRRGGGGGGGSVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRRNA 85

[Close]

BLAST of ClCG06G008495 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 6.4e-04
Identity = 23/56 (41.07%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 1  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHLGSFRCRLHRSNSL 57
          M   G M      +A   G   G++  +  +K  C+CSPTTH GSF+C+LHR+ SL
Sbjct: 1  MNDKGNMETEASIAAMGLG---GLSRQTSITKTICICSPTTHPGSFKCKLHRTPSL 53

The following BLAST results are available for this feature:

BLAST of ClCG06G008495 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046595.1	2.8e-30	88.24	hypothetical protein E6C27_scaffold114G001360 [Cucumis melo var. makuwa] >TYK001...	[more]
KAG6589904.1	4.1e-29	83.53	hypothetical protein SDJN03_15327, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8653119.1	3.5e-28	89.02	hypothetical protein Csa_020123 [Cucumis sativus]	[more]
KAF3961111.1	8.6e-11	52.38	hypothetical protein CMV_014232 [Castanea mollissima]	[more]
OUZ99929.1	1.5e-10	55.81	hypothetical protein BVC80_9069g38 [Macleaya cordata]	[more]

BLAST of ClCG06G008495 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG06G008495 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJV5	1.4e-30	88.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LWJ0	2.6e-29	86.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369490 PE=4 SV=1	[more]
A0A200PNZ0	7.1e-11	55.81	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9069g38 PE=4 SV=1	[more]
A0A5N6QHE2	1.2e-10	51.19	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003263 PE=4 SV=1	[more]
A0A6N2KNM0	6.0e-10	58.82	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS113710 PE=4 SV=...	[more]

BLAST of ClCG06G008495 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67910.1	1.2e-05	41.46	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	1.2e-05	41.46	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G55980.1	5.7e-05	70.37	serine-rich protein-related	[more]
AT3G13227.1	2.2e-04	50.00	serine-rich protein-related	[more]
AT1G24577.1	6.4e-04	41.07	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 1..84
None	No IPR available	PANTHER	PTHR33132:SF37	SERINE-RICH PROTEIN-LIKE PROTEIN	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G008495.1	ClCG06G008495.1	mRNA