ClCG06G006470 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G006470
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DNA-directed RNA polymerase III subunit RPC9
Location	CG_Chr06: 7396383 .. 7398648 (+)
RNA-Seq Expression	ClCG06G006470
Synteny	ClCG06G006470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATATCGACGAGGGTTTAGTCGCCGTCGTCGGGGTTTTTTTTGATTCCGGCCAAATCTCGAAGCATCTTCTCCATGAAAATGTAAGTTCTTAATCCTTATTCTTCCTGTTATTTGTTTCAAGATTGTTCCAATTATTTGCTTCCAAGATTTCTGTTAAACATCGATGCCAAATTACTGTCGCTAACAATGTAGTCGGAAGTATTGTTTGCAGATTAGAGGCCAACGCCGGCCCTCTTACGAATTTTGAGGTGCTGGACTTTTTAAGATCAAAGGGGGCAGCTAAGGATCCCACTAGGGTTCTTGCGAAGGTGGCACCATCTGAGTACAAGGTTATATATGTTCTTCCCCTTCTTTTGTGCTGGAATACGAGTTGATGTTGCAGGTTTTAATCGTTTTTTTTTTTTAAAAAAAAGGTTTATGATTATTTGAATCAAACTCCTGCTTGTAATCAAACGAGAGAAGCTATCATTGAGTTTGTTGAGAGGTCCAAAGAGTATGATCTCGCGAAAGCTGAAATTCTCAATATCATCAATTTGCGGCCGATTGCCCCGGTTGAGATATTTCCGGTAATTTGCCCCATCCATGACAGTAGTTCATCCCTTTTATTTATTTATTTATTTTATTTTATTTTTATTTTTATTTTTATTTTTATTTTTTTTGTAAATTTTTGTATGAATATTATGCTATGTTTTTGTATATGATCTCTGCTCTAAACTCATCTTACGTCCTCCCATATGTGAGTGAGGCCATTTCTTTTCATTGGTGCCTTAACTTTTTTTAATAGTCTTTGAATGAACTGTGAATGCCTTAGAAAGTTTGGTGGACAGAGGAGATCCATAATATTTCAGCTATTTTAAAATGATGATTTTAATGTGTTGGAAGAGAATGCTGTCAGAAATTGTAGTTAAAATTCAACTATAGTCATCTTCATCAGTTAATCTGTAGTTCTGTAAAGACGTGCTTGGGGGTGGGTCGGAAGGATTCCTAAATAGCATTCGGCTTTCTGGACAAAAGTTCTACTCGTGGGATAAGTGCTTTAGGAATAGTATAGTGAAAGTTTTTTTTCCCTTCCAAAACAATTGTCTCGTGGTCGTGTATACTGCAAAATACAACTTAACCTTTGCAAGCTGCCCAAAATTTATAATTGAAAATAGTTCTGTAGATAAAAGTAGAAAGTCCTTTCCGACGTACCTTAGAGGTACCTGTAGCACTTCTTGTATTTTACTTATGACCCATCTTACTAAATCTCAAAGACGTTTTTTTAGTTCTTAAGTTTTCTACTTGAGCCTTGAACTTAAGACTTTATAAGATATCTCCCAGCATTCCAAAACTCATGTGAACTAGTACTGGGCCATTCTTGGGAGGCAAAGTTGCTTTTCAAGATAGCTCCCAAACAAATTCTTGTCGGTGCTTTTATCTTGGTGATGGTCCTGTTTCCATGTTGGGAACTTGGGATGCTTTGTTTAGGAGTTCATATAAGAATCTGATGGATGAAGAAAATGAAAACATTAATTTGGATGAGTGGCTAAATTGAAATGTAGATTAATTGGGGGTCTATTCCTTTTGTTTCTAGATTATAGAGAGCTGTGATGCTCGCATGGGAGATGATGGAGAACGAATGCAAGAGCTTGCGTTGATGGTGGAACAGGTGTTCCCTACACCTCAAAATCAACCAACATCCGAAGTAGCTCCGAAGGAAGGTAAAGAGACCGAAACCATAGAGGAGCAAGCGGGGGATGTCAATGAAGAACCCATGGAAACGACTTGAACCCACTTCGAGAATTAAGTGAATGTTGGTAGTTATAAAGATTAAATGAGCTGCCTGTGCTTGATTTCCTCTTCAAGCCTTAACTCAACTATTCATAATGTGCAGACATGGGTTTCAGGTGAAGGATGAAACTGAGGACAGTTCCCATAAATAGAATGTGAAATCAAAGTCAAAGAAAGCTTTTGAGTGCTAAACAATGAAAATAGTTGGGCTTCTTTTTATCACTATTCTTCTGTTTGTTAAATATACCCTAATACTTTAGACATGGAAGAAGAAGCCGAGATTTTAGTTTCCCTAGGCTATTCCCATCTCCTCAAAGCAAACAGCAGAGGCAGCACATGCTCTCGACACTGAATTACTGACAGCAACAATACATGCCCTCATAATTTTAGCGTCATATCAAACTTAGATACTATCTTATTTTTGTGTTCTAACACATGTACTACACCTAGAGACTCCAACACTTGTTAAACACGTATCAAACTTTTGTTATGGTG

mRNA sequence

AATATCGACGAGGGTTTAGTCGCCGTCGTCGGGGTTTTTTTTGATTCCGGCCAAATCTCGAAGCATCTTCTCCATGAAAATATTAGAGGCCAACGCCGGCCCTCTTACGAATTTTGAGGTGCTGGACTTTTTAAGATCAAAGGGGGCAGCTAAGGATCCCACTAGGGTTCTTGCGAAGGTGGCACCATCTGAGTACAAGGTTTATGATTATTTGAATCAAACTCCTGCTTGTAATCAAACGAGAGAAGCTATCATTGAGTTTGTTGAGAGGTCCAAAGAGTATGATCTCGCGAAAGCTGAAATTCTCAATATCATCAATTTGCGGCCGATTGCCCCGGTTGAGATATTTCCGATTATAGAGAGCTGTGATGCTCGCATGGGAGATGATGGAGAACGAATGCAAGAGCTTGCGTTGATGGTGGAACAGGTGTTCCCTACACCTCAAAATCAACCAACATCCGAAGTAGCTCCGAAGGAAGGTAAAGAGACCGAAACCATAGAGGAGCAAGCGGGGGATGTCAATGAAGAACCCATGGAAACGACTTGAACCCACTTCGAGAATTAAGTGAATGTTGGTAGTTATAAAGATTAAATGAGCTGCCTGTGCTTGATTTCCTCTTCAAGCCTTAACTCAACTATTCATAATGTGCAGACATGGGTTTCAGGTGAAGGATGAAACTGAGGACAGTTCCCATAAATAGAATGTGAAATCAAAGTCAAAGAAAGCTTTTGAGTGCTAAACAATGAAAATAGTTGGGCTTCTTTTTATCACTATTCTTCTGTTTGTTAAATATACCCTAATACTTTAGACATGGAAGAAGAAGCCGAGATTTTAGTTTCCCTAGGCTATTCCCATCTCCTCAAAGCAAACAGCAGAGGCAGCACATGCTCTCGACACTGAATTACTGACAGCAACAATACATGCCCTCATAATTTTAGCGTCATATCAAACTTAGATACTATCTTATTTTTGTGTTCTAACACATGTACTACACCTAGAGACTCCAACACTTGTTAAACACGTATCAAACTTTTGTTATGGTG

Coding sequence (CDS)

ATGAAAATATTAGAGGCCAACGCCGGCCCTCTTACGAATTTTGAGGTGCTGGACTTTTTAAGATCAAAGGGGGCAGCTAAGGATCCCACTAGGGTTCTTGCGAAGGTGGCACCATCTGAGTACAAGGTTTATGATTATTTGAATCAAACTCCTGCTTGTAATCAAACGAGAGAAGCTATCATTGAGTTTGTTGAGAGGTCCAAAGAGTATGATCTCGCGAAAGCTGAAATTCTCAATATCATCAATTTGCGGCCGATTGCCCCGGTTGAGATATTTCCGATTATAGAGAGCTGTGATGCTCGCATGGGAGATGATGGAGAACGAATGCAAGAGCTTGCGTTGATGGTGGAACAGGTGTTCCCTACACCTCAAAATCAACCAACATCCGAAGTAGCTCCGAAGGAAGGTAAAGAGACCGAAACCATAGAGGAGCAAGCGGGGGATGTCAATGAAGAACCCATGGAAACGACTTGA

Protein sequence

MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQTREAIIEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGDDGERMQELALMVEQVFPTPQNQPTSEVAPKEGKETETIEEQAGDVNEEPMETT

Homology

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BLAST of ClCG06G006470 vs. NCBI nr
Match: XP_038875324.1 (uncharacterized protein LOC120067805 [Benincasa hispida])

HSP 1 Score: 276.9 bits (707), Expect = 1.0e-70
Identity = 144/162 (88.89%), Postives = 151/162 (93.21%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQTREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQ+REAI
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60

Query: 61  IEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGD---DGERMQELALMVE 120
           +EFVERSKEYDLAKAEILNIIN RPIAPVE+FPIIESC+ARMGD   DG RMQEL  MVE
Sbjct: 61  LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE 120

Query: 121 QVFPTPQNQPTSEVAPKEGKETETIEEQ--AGDVNEEPMETT 158
           QVFPTPQN+PTSEVAPKEGKE ET+EEQ  AGDVN+EPME T
Sbjct: 121 QVFPTPQNEPTSEVAPKEGKEAETMEEQEVAGDVNDEPMEKT 162

[Close]

BLAST of ClCG06G006470 vs. NCBI nr
Match: XP_004145392.1 (DNA-directed RNA polymerase III subunit rpc9 [Cucumis sativus] >XP_031736825.1 DNA-directed RNA polymerase III subunit rpc9 [Cucumis sativus] >KGN61665.1 hypothetical protein Csa_006033 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 1.4e-62
Identity = 128/160 (80.00%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQTREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLNQT ACNQTREAI
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60

Query: 61  IEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGDDG-ERMQELALMVEQV 120
           I F E+SKEYDLAKAEILNIINLRP  PVE+FP+IE+CDARMG+   ERM+E+ LMVE V
Sbjct: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV 120

Query: 121 FPTPQNQPTSEVAPKEGKETETIE--EQAGDVNEEPMETT 158
           FPTPQN+PT EV PKEG E E +E  E AGD +EEPM+TT
Sbjct: 121 FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 160

[Close]

BLAST of ClCG06G006470 vs. NCBI nr
Match: XP_008449317.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Cucumis melo] >KAA0057449.1 DNA-directed RNA polymerase III subunit RPC9-like [Cucumis melo var. makuwa] >TYK30148.1 DNA-directed RNA polymerase III subunit RPC9-like [Cucumis melo var. makuwa])

HSP 1 Score: 249.2 bits (635), Expect = 2.3e-62
Identity = 128/160 (80.00%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQTREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLNQTPACNQTREA+
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTPACNQTREAV 60

Query: 61  IEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGDDG-ERMQELALMVEQV 120
           I FVE+SKEYDLAKAEILNIINLRPI PVE+FPIIE+CD RMG++  ERM+E+  MVE V
Sbjct: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120

Query: 121 FPTPQNQPTSEVAPKEGKETETIEEQ--AGDVNEEPMETT 158
           FPTPQ QPT E  P EG E ET+EEQ  AGD  EEP++TT
Sbjct: 121 FPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT 160

[Close]

BLAST of ClCG06G006470 vs. NCBI nr
Match: XP_023006759.1 (uncharacterized protein LOC111499396 [Cucurbita maxima] >XP_023006760.1 uncharacterized protein LOC111499396 [Cucurbita maxima])

HSP 1 Score: 246.9 bits (629), Expect = 1.2e-61
Identity = 130/159 (81.76%), Postives = 139/159 (87.42%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQTREAI 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQT ACNQTREAI
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  IEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGDDGERMQELALMVEQVF 120
           IEFV++SK+YDLAKAE+LNI+NLRPI PVEIFPIIE  D RMGDDG  +QEL  MVEQVF
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDG--IQELTEMVEQVF 120

Query: 121 PTPQNQPTSEVAPKEGKETETIEEQAG--DVNEEPMETT 158
           PTPQ +PTSEVAP EGKE ET+ EQ    D  +EPMETT
Sbjct: 121 PTPQTEPTSEVAPMEGKEAETMAEQVEIVDAGQEPMETT 157

[Close]

BLAST of ClCG06G006470 vs. NCBI nr
Match: XP_023548749.1 (uncharacterized protein LOC111807313 [Cucurbita pepo subsp. pepo] >KAG6574960.1 DNA-directed RNA polymerase III subunit RPC9, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013528.1 DNA-directed RNA polymerase III subunit RPC9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.0 bits (624), Expect = 4.4e-61
Identity = 129/159 (81.13%), Postives = 138/159 (86.79%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQTREAI 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQT ACNQTREAI
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  IEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGDDGERMQELALMVEQVF 120
           IEFV++SK+YDLAKAE+LNI+NLRPI PVEIFPIIE  D RMGDDG  +QEL  MVEQVF
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDG--IQELTEMVEQVF 120

Query: 121 PTPQNQPTSEVAPKEGKETETIEEQAG--DVNEEPMETT 158
           PTPQ +PTSE AP EGKE ET+ EQ    D  +EPMETT
Sbjct: 121 PTPQTEPTSEAAPMEGKEAETMAEQEEIVDAGQEPMETT 157

[Close]

BLAST of ClCG06G006470 vs. ExPASy Swiss-Prot
Match: Q60482 (DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus OX=10141 GN=CRCP PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-08
Identity = 45/154 (29.22%), Postives = 77/154 (50.00%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPS---------EYKVYDYLNQTP 60
           M++ +AN+  L+N+EV   L      KD  R   K+  S          Y+   YL++TP
Sbjct: 1   MEVKDANSALLSNYEVFQLLTD---LKDQRRESGKMKHSAGQQNLNTITYETLKYLSKTP 60

Query: 61  ACNQTREAIIEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGDDGERMQE 120
             +Q+ E + EF+   K + L KAE L ++N RP+  VEI  ++E  + R  ++ E+++ 
Sbjct: 61  CRHQSPEIVREFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEETEERFTEE-EQIEA 120

Query: 121 LALMVEQVFPTPQNQPTSEVAPKEGKETETIEEQ 146
           L   V  + P       +E   ++   TE +EE+
Sbjct: 121 LLHTVTHILP-------AEPEVEQMASTEAMEEE 143

[Close]

BLAST of ClCG06G006470 vs. ExPASy Swiss-Prot
Match: A0JN61 (DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus OX=9913 GN=CRCP PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-08
Identity = 36/127 (28.35%), Postives = 65/127 (51.18%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACN 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP  +
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCKH 60

Query: 61  QTREAIIEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGDDGERMQELAL 120
           Q+ E + EF+   K + L KAE L ++N RP+  VEI  ++E  + R+ +  E+++ L  
Sbjct: 61  QSPEIVREFLTAMKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTE--EQIEALLH 120

Query: 121 MVEQVFP 122
            V  + P
Sbjct: 121 TVTSILP 125

[Close]

BLAST of ClCG06G006470 vs. ExPASy Swiss-Prot
Match: Q8VHM6 (DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus OX=10116 GN=Crcp PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-08
Identity = 42/148 (28.38%), Postives = 73/148 (49.32%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACN 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP  N
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCKN 60

Query: 61  QTREAIIEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGDDGERMQELAL 120
           Q+   + EF+   K + L KAE L ++N RP+  VEI  ++E  + R+ +  E+++ L  
Sbjct: 61  QSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTE--EQIEALLH 120

Query: 121 MVEQVFPT----PQNQPTSEVAPKEGKE 139
            V  + P      Q++ TS  A  E +E
Sbjct: 121 TVTSILPAGPEDEQSKSTSNDAAMEEEE 146

[Close]

BLAST of ClCG06G006470 vs. ExPASy Swiss-Prot
Match: O75575 (DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens OX=9606 GN=CRCP PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.7e-08
Identity = 35/127 (27.56%), Postives = 65/127 (51.18%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACN 60
           M++ +AN+  L+N+EV   L      R +      +     +    Y+   Y+++TP  +
Sbjct: 1   MEVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRH 60

Query: 61  QTREAIIEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGDDGERMQELAL 120
           Q+ E + EF+   K + L KAE L ++N RP+  VEI  ++E  + R+ +  E+++ L  
Sbjct: 61  QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTE--EQIEALLH 120

Query: 121 MVEQVFP 122
            V  + P
Sbjct: 121 TVTSILP 125

[Close]

BLAST of ClCG06G006470 vs. ExPASy Swiss-Prot
Match: O35427 (DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus OX=10090 GN=Crcp PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 39/147 (26.53%), Postives = 72/147 (48.98%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACN 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP  N
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCRN 60

Query: 61  QTREAIIEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGDDGERMQELAL 120
           Q+   + EF+   K + L KAE L ++N RP+  VEI  ++E  + R+ +  E+++ L  
Sbjct: 61  QSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTE--EQIEALLH 120

Query: 121 MVEQVFPT-PQNQPTSEVAPKEGKETE 141
            V  + P  P+++ +   +     E E
Sbjct: 121 TVTSILPAGPEDEQSKSTSNDVAMEEE 145

[Close]

BLAST of ClCG06G006470 vs. ExPASy TrEMBL
Match: A0A0A0LIC1 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis sativus OX=3659 GN=Csa_2G222080 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.6e-63
Identity = 128/160 (80.00%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQTREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLNQT ACNQTREAI
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60

Query: 61  IEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGDDG-ERMQELALMVEQV 120
           I F E+SKEYDLAKAEILNIINLRP  PVE+FP+IE+CDARMG+   ERM+E+ LMVE V
Sbjct: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV 120

Query: 121 FPTPQNQPTSEVAPKEGKETETIE--EQAGDVNEEPMETT 158
           FPTPQN+PT EV PKEG E E +E  E AGD +EEPM+TT
Sbjct: 121 FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 160

[Close]

BLAST of ClCG06G006470 vs. ExPASy TrEMBL
Match: A0A5A7UV88 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001320 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.1e-62
Identity = 128/160 (80.00%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQTREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLNQTPACNQTREA+
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTPACNQTREAV 60

Query: 61  IEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGDDG-ERMQELALMVEQV 120
           I FVE+SKEYDLAKAEILNIINLRPI PVE+FPIIE+CD RMG++  ERM+E+  MVE V
Sbjct: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120

Query: 121 FPTPQNQPTSEVAPKEGKETETIEEQ--AGDVNEEPMETT 158
           FPTPQ QPT E  P EG E ET+EEQ  AGD  EEP++TT
Sbjct: 121 FPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT 160

[Close]

BLAST of ClCG06G006470 vs. ExPASy TrEMBL
Match: A0A1S3BLS4 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis melo OX=3656 GN=LOC103491231 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.1e-62
Identity = 128/160 (80.00%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQTREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLNQTPACNQTREA+
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTPACNQTREAV 60

Query: 61  IEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGDDG-ERMQELALMVEQV 120
           I FVE+SKEYDLAKAEILNIINLRPI PVE+FPIIE+CD RMG++  ERM+E+  MVE V
Sbjct: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120

Query: 121 FPTPQNQPTSEVAPKEGKETETIEEQ--AGDVNEEPMETT 158
           FPTPQ QPT E  P EG E ET+EEQ  AGD  EEP++TT
Sbjct: 121 FPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT 160

[Close]

BLAST of ClCG06G006470 vs. ExPASy TrEMBL
Match: A0A6J1L324 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita maxima OX=3661 GN=LOC111499396 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.6e-62
Identity = 130/159 (81.76%), Postives = 139/159 (87.42%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQTREAI 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQT ACNQTREAI
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  IEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGDDGERMQELALMVEQVF 120
           IEFV++SK+YDLAKAE+LNI+NLRPI PVEIFPIIE  D RMGDDG  +QEL  MVEQVF
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDG--IQELTEMVEQVF 120

Query: 121 PTPQNQPTSEVAPKEGKETETIEEQAG--DVNEEPMETT 158
           PTPQ +PTSEVAP EGKE ET+ EQ    D  +EPMETT
Sbjct: 121 PTPQTEPTSEVAPMEGKEAETMAEQVEIVDAGQEPMETT 157

[Close]

BLAST of ClCG06G006470 vs. ExPASy TrEMBL
Match: A0A6J1H2X6 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita moschata OX=3662 GN=LOC111459926 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 6.2e-61
Identity = 128/159 (80.50%), Postives = 137/159 (86.16%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQTREAI 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQT ACNQTREAI
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  IEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGDDGERMQELALMVEQVF 120
           IEFV++SK+YDLAKAE+LNI+NLRPI PVEIFPIIE  D RMGDDG  +QEL  MVEQVF
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDG--IQELTEMVEQVF 120

Query: 121 PTPQNQPTSEVAPKEGKETETIEEQAG--DVNEEPMETT 158
           PTPQ +PTSE  P EGKE ET+ EQ    D  +EPMETT
Sbjct: 121 PTPQTEPTSEAVPMEGKEAETMAEQEEIVDAGQEPMETT 157

[Close]

BLAST of ClCG06G006470 vs. TAIR 10
Match: AT5G62950.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 136.0 bits (341), Expect = 2.7e-32
Identity = 79/142 (55.63%), Postives = 101/142 (71.13%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQTREAI 60
           MKI++ANAG LTNFEVLDFL S+GA+KD TRV+A +A SEYKVYDYL +T A  QTRE+I
Sbjct: 1   MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60

Query: 61  IEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGD-DGERMQELALMVEQV 120
            +F ++ K++ LAKAEILNIINLRP + VE+ PIIE+ D R  D DG     L L+ + +
Sbjct: 61  NKFADKCKDFKLAKAEILNIINLRPSSIVELLPIIENLDDREIDTDG----ILELVKDLL 120

Query: 121 FPTPQNQPTSEVAPKEGKETET 142
            P P     +  +PK+  E ET
Sbjct: 121 PPLP-----TTASPKDDDEEET 133

[Close]

BLAST of ClCG06G006470 vs. TAIR 10
Match: AT5G62950.3 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 136.0 bits (341), Expect = 2.7e-32
Identity = 79/142 (55.63%), Postives = 101/142 (71.13%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQTREAI 60
           MKI++ANAG LTNFEVLDFL S+GA+KD TRV+A +A SEYKVYDYL +T A  QTRE+I
Sbjct: 1   MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60

Query: 61  IEFVERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGD-DGERMQELALMVEQV 120
            +F ++ K++ LAKAEILNIINLRP + VE+ PIIE+ D R  D DG     L L+ + +
Sbjct: 61  NKFADKCKDFKLAKAEILNIINLRPSSIVELLPIIENLDDREIDTDG----ILELVKDLL 120

Query: 121 FPTPQNQPTSEVAPKEGKETET 142
            P P     +  +PK+  E ET
Sbjct: 121 PPLP-----TTASPKDDDEEET 133

[Close]

BLAST of ClCG06G006470 vs. TAIR 10
Match: AT5G62950.2 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 125.6 bits (314), Expect = 3.6e-29
Identity = 62/93 (66.67%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 1  MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQTREAI 60
          MKI++ANAG LTNFEVLDFL S+GA+KD TRV+A +A SEYKVYDYL +T A  QTRE+I
Sbjct: 1  MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60

Query: 61 IEFVERSKEYDLAKAEILNIINLRPIAPVEIFP 94
           +F ++ K++ LAKAEILNIINLRP + VE+ P
Sbjct: 61 NKFADKCKDFKLAKAEILNIINLRPSSIVELLP 93

[Close]

BLAST of ClCG06G006470 vs. TAIR 10
Match: AT3G28956.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-28
Identity = 73/141 (51.77%), Postives = 98/141 (69.50%), Query Frame = 0


Query: 4   LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQTREAIIEF 63
           ++ANAG LTNFE+LDFL S+GA+KD TRV+A +A SEYKVYDYL +T A  QTRE++ + 
Sbjct: 1   MKANAGALTNFELLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESVNKS 60

Query: 64  VERSKEYDLAKAEILNIINLRPIAPVEIFPIIESCDARMGD-DGERMQELALMVEQVFPT 123
            ++ K++ LAKAEILNIINL P + VE+ PIIE+ D R  D DG     +  +V+ + P 
Sbjct: 61  ADKCKDFKLAKAEILNIINLWPSSIVELLPIIENLDDREIDTDG-----ILELVKDLLPP 120

Query: 124 PQNQPTSEVAPKEGKETETIE 144
               PT+E +PK+  E E  E
Sbjct: 121 ---LPTAE-SPKDNDEEEETE 132

The following BLAST results are available for this feature:

BLAST of ClCG06G006470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875324.1	1.0e-70	88.89	uncharacterized protein LOC120067805 [Benincasa hispida]	[more]
XP_004145392.1	1.4e-62	80.00	DNA-directed RNA polymerase III subunit rpc9 [Cucumis sativus] >XP_031736825.1 D...	[more]
XP_008449317.1	2.3e-62	80.00	PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Cucumis melo] >KAA...	[more]
XP_023006759.1	1.2e-61	81.76	uncharacterized protein LOC111499396 [Cucurbita maxima] >XP_023006760.1 uncharac...	[more]
XP_023548749.1	4.4e-61	81.13	uncharacterized protein LOC111807313 [Cucurbita pepo subsp. pepo] >KAG6574960.1 ...	[more]

BLAST of ClCG06G006470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q60482	2.0e-08	29.22	DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus OX=10141 GN=CRCP...	[more]
A0JN61	2.6e-08	28.35	DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus OX=9913 GN=CRCP PE=2 ...	[more]
Q8VHM6	4.5e-08	28.38	DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus OX=10116 GN=Cr...	[more]
O75575	7.7e-08	27.56	DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens OX=9606 GN=CRCP PE=...	[more]
O35427	1.7e-07	26.53	DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus OX=10090 GN=Crcp PE...	[more]

BLAST of ClCG06G006470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIC1	6.6e-63	80.00	DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis sativus OX=3659 GN=Csa_2...	[more]
A0A5A7UV88	1.1e-62	80.00	DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BLS4	1.1e-62	80.00	DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1L324	5.6e-62	81.76	DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1H2X6	6.2e-61	80.50	DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of ClCG06G006470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62950.1	2.7e-32	55.63	RNA polymerase II, Rpb4, core protein	[more]
AT5G62950.3	2.7e-32	55.63	RNA polymerase II, Rpb4, core protein	[more]
AT5G62950.2	3.6e-29	66.67	RNA polymerase II, Rpb4, core protein	[more]
AT3G28956.1	1.4e-28	51.77	RNA polymerase II, Rpb4, core protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006590	RNA polymerase Rpb4/RPC9, core	SMART	SM00657	rpol4neu2	coord: 1..123 e-value: 2.7E-19 score: 80.1
IPR005574	RNA polymerase subunit RPB4/RPC9	PFAM	PF03874	RNA_pol_Rpb4	coord: 11..111 e-value: 6.4E-18 score: 65.3
IPR038324	Rpb4/RPC9 superfamily	GENE3D	1.20.1250.40		coord: 1..121 e-value: 2.0E-27 score: 97.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..157
IPR038846	DNA-directed RNA polymerase III subunit RPC9	PANTHER	PTHR15561	CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN	coord: 1..144
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 4..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G006470.1	ClCG06G006470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006384	transcription initiation from RNA polymerase III promoter
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005666	RNA polymerase III complex
cellular_component	GO:0030880	RNA polymerase complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0000166	nucleotide binding