ClCG06G004940 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G004940
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	multiple organellar RNA editing factor 3, mitochondrial-like
Location	CG_Chr06: 5618608 .. 5620905 (-)
RNA-Seq Expression	ClCG06G004940
Synteny	ClCG06G004940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCTCTCAACAATGGCGTCCTCAGCCACTCGGCGCACTTTACTCACTGTTCTTAGCCGAAGCCTCTCTTCTTCATCACCATCTTCTTCTTCCTTCTTCCTTTCATCTTCTATTTCTTCTCGCCTCCGATTCGCTTTTCCTCTGCTCAACAGACACGATCAAATAATCCCTAATTCATTCAATCTTCCTATTCGATTCAAGGCTTCGGGATCCGGATACTCTCCCCTCAACGATCCTTCTCCTAATTGGAGCAATCGACCTCCAAAAGAGACGATACTCCTCGATGGCTGCGATTACGAACACTGGCTGATCGTGATGGAGTTTCCAAATGACCCAAAACCATCGGAGGAGGAGATGGTGAATTCCTATGTCAAAACACTAGCCGCTGTTGTCGGAAGGTATGAGATTGAAAACAAATTATTATACACGGATTATCTTCTTTAGTTATTTTAGGGTTTTCTTTTTCTTCTGATTTTCAGTGAGGAAGAGGCGAAGAAGAAAATATACTCAGTCAGTACAACTACATATACTGGCTTTGGTGCCTTGATTTCTGAAGAGCTTTCTTACAAAGTGAAAGGTAATAGTTTCTGTGCTTATTCGTGTTATGATTAGATTAAGGAGCTTTGGAAATCTGATTTATTCGGCTTGTAGATTTTGGAATTGAAGATTGAAAGTGTAGTTTTGACTTTGAGCTCAAGCACGCAATGTGTTTGATGAAAGTTCCCAAAATAAAATAAACGTCCATTTGATAACTATTTGATTTTTAAAAATTATGTTTGTTTTACTTCTATTTCTTTACCATGGTTAACATTTGAATTTGAATTTTTAGCCAAGTTCTAAAAAGAACAAGTCTTTTAAGAAATTGCTTTAATTAGTTACCAAAACTATGTATTTTGAAAACACTACTAAAAGGTAGATAATAAACAAATAAACATATAAGTGGACGTAGTGTTTATAAGTTTAATTTTCAAAATTGAAATACTGGACTAATAAATTTTCACAATTGACTCCAATTTTAGTTTGATAATATGTGCGTTACCACCATGAAGGTTTGACATTTGCATTATTTTGTGATCGTTTGTACTTAGCTTTTGTAAAGAACACTATTAAGGAGCCTTGTGAACCAGATTTTCTCATCTTATAGATATTGGAAATGTGTCTAGTGTTTGGATTAAAACTAAAGATTGAAAGAGTACTTTTTTAACTTAAGCACTCAGTGTGTTTGATGAAACTTTCTAGATAATATTTGAATGGTTCAGGATTTTTCCTTTCTGTTTCCAAGTCTGCTTCAGAATCAACCCGATTTTAGTTTTATCGTTTTTGTGTTATACGACTGTGAAGGTTTGACATTTGTGATTTGTGTTATTTACTGATAATTTCACTTTAGCTCATGTAAAGAATAGAATTGGCATCTGACTTGAGCTATTCATTCCGGATGAAACAGAATTGCCAGGTGTTCTATGGGTTTTACCAGATTCATATCTTGATGTTCCAAACAAAGATTACGGAGGTGATCGCGCTTCTTACTTTATCAAATTGTTATAAATCGAAACCAGTCGATATCTCAGGTGATCTGTTTATCGTGTGAATCATTCGTGTGAATTTCAGGCGATCTGTTTATCGATGGAAAGGTCATCCCCAGACCGCAGTATAGGTACAACGATAGGGAACCATCTGGTAGAAACAGGCCTCGTCCACGGTACGATAGACGCCGAGAAACTATGCAAGTTGAACGGAGACAACCGTTTCAGAGACAAAACTGGGGTCGAGACCAGAGAGATCCAATTCAACCACCAACCTCCATGGATGGTCAAAATACAGCTCGAAGTGGTGTTGGAGATTTCTCGACAAATCCAGGCGAGTTTAATCGGAGCAATCACTGATAGTGGATGTTTTAAAATGTGAATATTTATAGACTCCTTTAATGAATGAAGTCTAGGCAACATATGTCTAGATTAGCCTAGATTTTTATCACTCCTCAATGCATGACAAAGCTAGGAGATTTTAGAATCCTTACACATCAACATTCGAAATATTCAAGTATGAAATTTCTATCAGTCCTTAAATCTAGCATCTAAATGCATTGAAGGGGTGCATATTTAGTTTGTTGACTAGATTCCTTAATGTTTTATCTCTAATTTCCTTCTTTCATTAGCAATAGGTCCAAAGATTAAAAAGAAACTATTGGGAATGATCGAACTGTTCCTTCTTGGATGTGATGAAATTCGACCAATACCCAGGCATTTAGTTTTATTTGAATAATGAATGATCTATGAATTATGGGGGTTTTGATCTTGG

mRNA sequence

AAGCTCTCAACAATGGCGTCCTCAGCCACTCGGCGCACTTTACTCACTGTTCTTAGCCGAAGCCTCTCTTCTTCATCACCATCTTCTTCTTCCTTCTTCCTTTCATCTTCTATTTCTTCTCGCCTCCGATTCGCTTTTCCTCTGCTCAACAGACACGATCAAATAATCCCTAATTCATTCAATCTTCCTATTCGATTCAAGGCTTCGGGATCCGGATACTCTCCCCTCAACGATCCTTCTCCTAATTGGAGCAATCGACCTCCAAAAGAGACGATACTCCTCGATGGCTGCGATTACGAACACTGGCTGATCGTGATGGAGTTTCCAAATGACCCAAAACCATCGGAGGAGGAGATGGTGAATTCCTATGTCAAAACACTAGCCGCTGTTGTCGGAAGTGAGGAAGAGGCGAAGAAGAAAATATACTCAGTCAGTACAACTACATATACTGGCTTTGGTGCCTTGATTTCTGAAGAGCTTTCTTACAAAGTGAAAGAATTGGCATCTGACTTGAGCTATTCATTCCGGATGAAACAGAATTGCCAGGTGTTCTATGGGTTTTACCAGATTCATATCTTGATGTTCCAAACAAAGATTACGGAGGCGATCTGTTTATCGATGGAAAGGTCATCCCCAGACCGCAGTATAGGTACAACGATAGGGAACCATCTGGTAGAAACAGGCCTCGTCCACGGTACGATAGACGCCGAGAAACTATGCAAGTTGAACGGAGACAACCGTTTCAGAGACAAAACTGGGGTCGAGACCAGAGAGATCCAATTCAACCACCAACCTCCATGGATGGTCAAAATACAGCTCGAAGTGGTGTTGGAGATTTCTCGACAAATCCAGGCGAGTTTAATCGGAGCAATCACTGATAGTGGATGTTTTAAAATGTGAATATTTATAGACTCCTTTAATGAATGAAGTCTAGGCAACATATGTCTAGATTAGCCTAGATTTTTATCACTCCTCAATGCATGACAAAGCTAGGAGATTTTAGAATCCTTACACATCAACATTCGAAATATTCAAGTATGAAATTTCTATCAGTCCTTAAATCTAGCATCTAAATGCATTGAAGGGGTGCATATTTAGTTTGTTGACTAGATTCCTTAATGTTTTATCTCTAATTTCCTTCTTTCATTAGCAATAGGTCCAAAGATTAAAAAGAAACTATTGGGAATGATCGAACTGTTCCTTCTTGGATGTGATGAAATTCGACCAATACCCAGGCATTTAGTTTTATTTGAATAATGAATGATCTATGAATTATGGGGGTTTTGATCTTGG

Coding sequence (CDS)

ATGGCGTCCTCAGCCACTCGGCGCACTTTACTCACTGTTCTTAGCCGAAGCCTCTCTTCTTCATCACCATCTTCTTCTTCCTTCTTCCTTTCATCTTCTATTTCTTCTCGCCTCCGATTCGCTTTTCCTCTGCTCAACAGACACGATCAAATAATCCCTAATTCATTCAATCTTCCTATTCGATTCAAGGCTTCGGGATCCGGATACTCTCCCCTCAACGATCCTTCTCCTAATTGGAGCAATCGACCTCCAAAAGAGACGATACTCCTCGATGGCTGCGATTACGAACACTGGCTGATCGTGATGGAGTTTCCAAATGACCCAAAACCATCGGAGGAGGAGATGGTGAATTCCTATGTCAAAACACTAGCCGCTGTTGTCGGAAGTGAGGAAGAGGCGAAGAAGAAAATATACTCAGTCAGTACAACTACATATACTGGCTTTGGTGCCTTGATTTCTGAAGAGCTTTCTTACAAAGTGAAAGAATTGGCATCTGACTTGAGCTATTCATTCCGGATGAAACAGAATTGCCAGGTGTTCTATGGGTTTTACCAGATTCATATCTTGATGTTCCAAACAAAGATTACGGAGGCGATCTGTTTATCGATGGAAAGGTCATCCCCAGACCGCAGTATAGGTACAACGATAGGGAACCATCTGGTAGAAACAGGCCTCGTCCACGGTACGATAGACGCCGAGAAACTATGCAAGTTGAACGGAGACAACCGTTTCAGAGACAAAACTGGGGTCGAGACCAGAGAGATCCAATTCAACCACCAACCTCCATGGATGGTCAAAATACAGCTCGAAGTGGTGTTGGAGATTTCTCGACAAATCCAGGCGAGTTTAATCGGAGCAATCACTGATAGTGGATGTTTTAAAATGTGA

Protein sequence

MASSATRRTLLTVLSRSLSSSSPSSSSFFLSSSISSRLRFAFPLLNRHDQIIPNSFNLPIRFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKELASDLSYSFRMKQNCQVFYGFYQIHILMFQTKITEAICLSMERSSPDRSIGTTIGNHLVETGLVHGTIDAEKLCKLNGDNRFRDKTGVETREIQFNHQPPWMVKIQLEVVLEISRQIQASLIGAITDSGCFKM

Homology

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BLAST of ClCG06G004940 vs. NCBI nr
Match: XP_038906658.1 (multiple organellar RNA editing factor 3, mitochondrial [Benincasa hispida])

HSP 1 Score: 299.3 bits (765), Expect = 3.7e-77
Identity = 156/163 (95.71%), Postives = 158/163 (96.93%), Query Frame = 0


Query: 1   MASSATRRTLLTVLSRSLSSSSPSSSSFFLSSSISSRLRFAFPLLNRHDQIIPNSFNLPI 60
           MASSATRRTL TVLSRSLSSSSPSSSSFFL SSISSRLRF+FPLLNR DQIIPNSFNLPI
Sbjct: 1   MASSATRRTLFTVLSRSLSSSSPSSSSFFLPSSISSRLRFSFPLLNRLDQIIPNSFNLPI 60

Query: 61  RFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYV 120
           RFK+SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFP DPKPSEEEMVNSYV
Sbjct: 61  RFKSSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPTDPKPSEEEMVNSYV 120

Query: 121 KTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164
           K LAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL
Sbjct: 121 KILAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 163

[Close]

BLAST of ClCG06G004940 vs. NCBI nr
Match: XP_004150496.2 (multiple organellar RNA editing factor 3, mitochondrial [Cucumis sativus] >KGN47420.1 hypothetical protein Csa_021704 [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 3.8e-74
Identity = 153/164 (93.29%), Postives = 156/164 (95.12%), Query Frame = 0


Query: 1   MASSATRRTLLTVLSRSLSSSSPSSSSFFL-SSSISSRLRFAFPLLNRHDQIIPNSFNLP 60
           MASSATRRTL TVLSRS+SSSS SSSSF L S  ISSRLRFAFPLLNR DQIIP SFNLP
Sbjct: 1   MASSATRRTLFTVLSRSISSSSSSSSSFLLPSPPISSRLRFAFPLLNRQDQIIPASFNLP 60

Query: 61  IRFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSY 120
           IRFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIV+EFPNDPKPSEEEMVN+Y
Sbjct: 61  IRFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVLEFPNDPKPSEEEMVNTY 120

Query: 121 VKTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164
           VKTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL
Sbjct: 121 VKTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164

[Close]

BLAST of ClCG06G004940 vs. NCBI nr
Match: XP_008458407.1 (PREDICTED: multiple organellar RNA editing factor 3, mitochondrial-like [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 1.9e-73
Identity = 152/163 (93.25%), Postives = 155/163 (95.09%), Query Frame = 0


Query: 1   MASSATRRTLLTVLSRSLSSSSPSSSSFFLSSSISSRLRFAFPLLNRHDQIIPNSFNLPI 60
           MASSATRRTL TVLSRSLS+SS SSSSF LSS ISSRLRFAFPLLNR DQIIP SFNLPI
Sbjct: 1   MASSATRRTLFTVLSRSLSASSSSSSSFLLSSPISSRLRFAFPLLNRQDQIIPTSFNLPI 60

Query: 61  RFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYV 120
           RFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIV+EFP DPKPSEEEMVN+YV
Sbjct: 61  RFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVLEFP-DPKPSEEEMVNTYV 120

Query: 121 KTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164
           KTLAAVVGSEEEAK KIYSVSTTTYTGFGALISEELSYKVKEL
Sbjct: 121 KTLAAVVGSEEEAKTKIYSVSTTTYTGFGALISEELSYKVKEL 162

[Close]

BLAST of ClCG06G004940 vs. NCBI nr
Match: XP_022959433.1 (multiple organellar RNA editing factor 3, mitochondrial [Cucurbita moschata])

HSP 1 Score: 275.0 bits (702), Expect = 7.5e-70
Identity = 143/159 (89.94%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 5   ATRRTLLTVLSRSLSSSSPSSSSFFLSSSISSRLRFAFPLLNRHDQIIPNSFNLPIRFKA 64
           A RRT  TVLSRS SSS  SSSSF L SSISSRLRFAFPLL+R  +IIPNSFN P+RF+ 
Sbjct: 2   AARRTFFTVLSRSFSSS--SSSSFSLPSSISSRLRFAFPLLDRQSRIIPNSFNFPVRFRT 61

Query: 65  SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLA 124
           SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLA
Sbjct: 62  SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLA 121

Query: 125 AVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164
           AVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL
Sbjct: 122 AVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 158

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BLAST of ClCG06G004940 vs. NCBI nr
Match: KAG6575083.1 (Multiple organellar RNA editing factor 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 275.0 bits (702), Expect = 7.5e-70
Identity = 143/159 (89.94%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 5   ATRRTLLTVLSRSLSSSSPSSSSFFLSSSISSRLRFAFPLLNRHDQIIPNSFNLPIRFKA 64
           A RRT  TVLSRS SSS  SSSSF L SSISSRLRFAFPLL+R  +IIPNSFN P+RF+ 
Sbjct: 2   AARRTFFTVLSRSFSSS--SSSSFSLPSSISSRLRFAFPLLDRQSRIIPNSFNFPVRFRT 61

Query: 65  SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLA 124
           SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLA
Sbjct: 62  SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLA 121

Query: 125 AVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164
           AVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL
Sbjct: 122 AVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 158

[Close]

BLAST of ClCG06G004940 vs. ExPASy Swiss-Prot
Match: Q84JZ6 (Multiple organellar RNA editing factor 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF3 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.8e-51
Identity = 114/165 (69.09%), Postives = 131/165 (79.39%), Query Frame = 0


Query: 1   MASSATRRTLLTVLSRSLSSSSPSSSSFFLSSSISSRLRFAFPLLNR--HDQIIPNSFNL 60
           MA  +TRRTL T+L+++LSSS+  SSSF    ++SSR RFA PL+ +    +       +
Sbjct: 1   MALISTRRTLSTLLNKTLSSSTSYSSSF---PTLSSRSRFAMPLIEKVSSSRTSLGPCYI 60

Query: 61  PIRFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNS 120
             R K SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEF  DPKP+EEEM+NS
Sbjct: 61  STRPKTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEF-TDPKPTEEEMINS 120

Query: 121 YVKTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164
           YVKTL +V+G EEEAKKKIYSV T+TYTGFGALISEELS KVK L
Sbjct: 121 YVKTLTSVLGCEEEAKKKIYSVCTSTYTGFGALISEELSCKVKAL 161

[Close]

BLAST of ClCG06G004940 vs. ExPASy Swiss-Prot
Match: Q9LKA5 (Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF8 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 9.9e-33
Identity = 78/158 (49.37%), Postives = 115/158 (72.78%), Query Frame = 0


Query: 8   RTLLTVLSRSLSSSSPSSSSFFLSSSISSRLRFAFPLLNRHDQIIPNSFNLPIRFKASGS 67
           ++L  + +RS +SS+P + S   +SS+ SR R   PL+     +      + ++  ++ +
Sbjct: 16  KSLSFLFTRSFASSAPLAKS--PASSLLSRSR---PLVAAFSSVFRGGL-VSVKGLSTQA 75

Query: 68  GYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAAVV 127
             S LNDP+PNWSNRPPKETILLDGCD+EHWL+V+E P   +P+ +E+++SY+KTLA +V
Sbjct: 76  TSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVE-PPQGEPTRDEIIDSYIKTLAQIV 135

Query: 128 GSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKELAS 166
           GSE+EA+ KIYSVST  Y  FGAL+SE+LS+K+KEL++
Sbjct: 136 GSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSN 166

[Close]

BLAST of ClCG06G004940 vs. ExPASy Swiss-Prot
Match: O22793 (Multiple organellar RNA editing factor 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MORF2 PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.4e-23
Identity = 58/109 (53.21%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 56  FNLPIRFKASGSGYSPLNDPSPNWSNRPPKETI-LLDGCDYEHWLIVMEFPNDPKPSEEE 115
           F++      SGS YSPLN  S N+S+RPP E   L  GCDYEHWLIVM+ P     ++++
Sbjct: 45  FSIRCGANRSGSTYSPLNSGS-NFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQ 104

Query: 116 MVNSYVKTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164
           M++ Y++TLA VVGSEEEAKK+IY+VS   Y GFG  I EE S K++ L
Sbjct: 105 MIDCYIQTLAKVVGSEEEAKKRIYNVSCERYLGFGCEIDEETSTKLEGL 152

[Close]

BLAST of ClCG06G004940 vs. ExPASy Swiss-Prot
Match: Q9LPZ1 (Multiple organellar RNA editing factor 9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MORF9 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.1e-23
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 85  KETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAAVVGSEEEAKKKIYSVSTTT 144
           +ETI+L GCDY HWLIVMEFP DP PS ++M+++Y+ TLA V+GS EEAKK +Y+ STTT
Sbjct: 77  RETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTT 136

Query: 145 YTGFGALISEELSYKVKEL 164
           YTGF   I EE S K K L
Sbjct: 137 YTGFQCTIDEETSEKFKGL 155

[Close]

BLAST of ClCG06G004940 vs. ExPASy Swiss-Prot
Match: Q38732 (DAG protein, chloroplastic OS=Antirrhinum majus OX=4151 GN=DAG PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.6e-22
Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = 0


Query: 11  LTVLSRSLSSSSPSSSSFFLSSSISSRLRFAFPLLNRHDQIIPNSFNLPIRFKASGSGYS 70
           L++L ++L   +P+S +     SI S    +F    R   I   S   P     +   YS
Sbjct: 6   LSLLPKTL---TPNSKTLAPLLSILSTSSLSFLPCTRPHPIKSRSAAYPTVRALTDGEYS 65

Query: 71  PLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAAVVGSE 130
              + + N S    +ETI+L GCDY HWLIVMEFP DP P+ E+M+++Y+ TLA V+GS 
Sbjct: 66  SRRNNNNNNSGE-ERETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSM 125

Query: 131 EEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164
           EEAKK +Y+ STTTYTGF   ++EE S K K L
Sbjct: 126 EEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGL 154

[Close]

BLAST of ClCG06G004940 vs. ExPASy TrEMBL
Match: A0A0A0KCH1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318670 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.9e-74
Identity = 153/164 (93.29%), Postives = 156/164 (95.12%), Query Frame = 0


Query: 1   MASSATRRTLLTVLSRSLSSSSPSSSSFFL-SSSISSRLRFAFPLLNRHDQIIPNSFNLP 60
           MASSATRRTL TVLSRS+SSSS SSSSF L S  ISSRLRFAFPLLNR DQIIP SFNLP
Sbjct: 1   MASSATRRTLFTVLSRSISSSSSSSSSFLLPSPPISSRLRFAFPLLNRQDQIIPASFNLP 60

Query: 61  IRFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSY 120
           IRFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIV+EFPNDPKPSEEEMVN+Y
Sbjct: 61  IRFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVLEFPNDPKPSEEEMVNTY 120

Query: 121 VKTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164
           VKTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL
Sbjct: 121 VKTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164

[Close]

BLAST of ClCG06G004940 vs. ExPASy TrEMBL
Match: A0A1S3C8E0 (multiple organellar RNA editing factor 3, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103497830 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 9.2e-74
Identity = 152/163 (93.25%), Postives = 155/163 (95.09%), Query Frame = 0


Query: 1   MASSATRRTLLTVLSRSLSSSSPSSSSFFLSSSISSRLRFAFPLLNRHDQIIPNSFNLPI 60
           MASSATRRTL TVLSRSLS+SS SSSSF LSS ISSRLRFAFPLLNR DQIIP SFNLPI
Sbjct: 1   MASSATRRTLFTVLSRSLSASSSSSSSFLLSSPISSRLRFAFPLLNRQDQIIPTSFNLPI 60

Query: 61  RFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYV 120
           RFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIV+EFP DPKPSEEEMVN+YV
Sbjct: 61  RFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVLEFP-DPKPSEEEMVNTYV 120

Query: 121 KTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164
           KTLAAVVGSEEEAK KIYSVSTTTYTGFGALISEELSYKVKEL
Sbjct: 121 KTLAAVVGSEEEAKTKIYSVSTTTYTGFGALISEELSYKVKEL 162

[Close]

BLAST of ClCG06G004940 vs. ExPASy TrEMBL
Match: A0A6J1H5X4 (multiple organellar RNA editing factor 3, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111460412 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 3.6e-70
Identity = 143/159 (89.94%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 5   ATRRTLLTVLSRSLSSSSPSSSSFFLSSSISSRLRFAFPLLNRHDQIIPNSFNLPIRFKA 64
           A RRT  TVLSRS SSS  SSSSF L SSISSRLRFAFPLL+R  +IIPNSFN P+RF+ 
Sbjct: 2   AARRTFFTVLSRSFSSS--SSSSFSLPSSISSRLRFAFPLLDRQSRIIPNSFNFPVRFRT 61

Query: 65  SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLA 124
           SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLA
Sbjct: 62  SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLA 121

Query: 125 AVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164
           AVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL
Sbjct: 122 AVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 158

[Close]

BLAST of ClCG06G004940 vs. ExPASy TrEMBL
Match: A0A6J1C9B1 (multiple organellar RNA editing factor 3, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111009569 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 5.2e-69
Identity = 142/163 (87.12%), Postives = 148/163 (90.80%), Query Frame = 0


Query: 1   MASSATRRTLLTVLSRSLSSSSPSSSSFFLSSSISSRLRFAFPLLNRHDQIIPNSFNLPI 60
           MASSATRRTL TVL+RS S     SSSF  SS +SSRLRFAF L+NR  QI PN+FNLPI
Sbjct: 1   MASSATRRTLFTVLTRSRS----FSSSFSFSSPVSSRLRFAFALINRLGQIAPNAFNLPI 60

Query: 61  RFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYV 120
           RFK SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIV+EFPNDPKPSEEEMVNSY+
Sbjct: 61  RFKTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVLEFPNDPKPSEEEMVNSYI 120

Query: 121 KTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164
           KTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL
Sbjct: 121 KTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 159

[Close]

BLAST of ClCG06G004940 vs. ExPASy TrEMBL
Match: A0A6J1L4U9 (multiple organellar RNA editing factor 3, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111499149 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 6.4e-67
Identity = 138/159 (86.79%), Postives = 141/159 (88.68%), Query Frame = 0


Query: 5   ATRRTLLTVLSRSLSSSSPSSSSFFLSSSISSRLRFAFPLLNRHDQIIPNSFNLPIRFKA 64
           A RR   TVLSRS SSSS  S      SSISSRLR AFPLL+R  QIIPNSFN P+RF+ 
Sbjct: 2   AARRAFFTVLSRSFSSSSSLSH----PSSISSRLRLAFPLLDRQSQIIPNSFNFPVRFRT 61

Query: 65  SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLA 124
           SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLA
Sbjct: 62  SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLA 121

Query: 125 AVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164
           AVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL
Sbjct: 122 AVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 156

[Close]

BLAST of ClCG06G004940 vs. TAIR 10
Match: AT3G06790.2 (plastid developmental protein DAG, putative )

HSP 1 Score: 203.8 bits (517), Expect = 2.0e-52
Identity = 114/165 (69.09%), Postives = 131/165 (79.39%), Query Frame = 0


Query: 1   MASSATRRTLLTVLSRSLSSSSPSSSSFFLSSSISSRLRFAFPLLNR--HDQIIPNSFNL 60
           MA  +TRRTL T+L+++LSSS+  SSSF    ++SSR RFA PL+ +    +       +
Sbjct: 1   MALISTRRTLSTLLNKTLSSSTSYSSSF---PTLSSRSRFAMPLIEKVSSSRTSLGPCYI 60

Query: 61  PIRFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNS 120
             R K SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEF  DPKP+EEEM+NS
Sbjct: 61  STRPKTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEF-TDPKPTEEEMINS 120

Query: 121 YVKTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164
           YVKTL +V+G EEEAKKKIYSV T+TYTGFGALISEELS KVK L
Sbjct: 121 YVKTLTSVLGCEEEAKKKIYSVCTSTYTGFGALISEELSCKVKAL 161

[Close]

BLAST of ClCG06G004940 vs. TAIR 10
Match: AT3G06790.1 (plastid developmental protein DAG, putative )

HSP 1 Score: 201.8 bits (512), Expect = 7.5e-52
Identity = 113/165 (68.48%), Postives = 131/165 (79.39%), Query Frame = 0


Query: 1   MASSATRRTLLTVLSRSLSSSSPSSSSFFLSSSISSRLRFAFPLLNR--HDQIIPNSFNL 60
           MA  +TRRTL T+L+++LSSS+  SSSF    ++SSR RFA PL+ +    +       +
Sbjct: 1   MALISTRRTLSTLLNKTLSSSTSYSSSF---PTLSSRSRFAMPLIEKVSSSRTSLGPCYI 60

Query: 61  PIRFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNS 120
             R K SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEF  DPKP+EEEM+NS
Sbjct: 61  STRPKTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEF-TDPKPTEEEMINS 120

Query: 121 YVKTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164
           YVKTL +V+G +EEAKKKIYSV T+TYTGFGALISEELS KVK L
Sbjct: 121 YVKTLTSVLGWQEEAKKKIYSVCTSTYTGFGALISEELSCKVKAL 161

[Close]

BLAST of ClCG06G004940 vs. TAIR 10
Match: AT3G15000.1 (cobalt ion binding )

HSP 1 Score: 142.1 bits (357), Expect = 7.0e-34
Identity = 78/158 (49.37%), Postives = 115/158 (72.78%), Query Frame = 0


Query: 8   RTLLTVLSRSLSSSSPSSSSFFLSSSISSRLRFAFPLLNRHDQIIPNSFNLPIRFKASGS 67
           ++L  + +RS +SS+P + S   +SS+ SR R   PL+     +      + ++  ++ +
Sbjct: 16  KSLSFLFTRSFASSAPLAKS--PASSLLSRSR---PLVAAFSSVFRGGL-VSVKGLSTQA 75

Query: 68  GYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAAVV 127
             S LNDP+PNWSNRPPKETILLDGCD+EHWL+V+E P   +P+ +E+++SY+KTLA +V
Sbjct: 76  TSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVE-PPQGEPTRDEIIDSYIKTLAQIV 135

Query: 128 GSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKELAS 166
           GSE+EA+ KIYSVST  Y  FGAL+SE+LS+K+KEL++
Sbjct: 136 GSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSN 166

[Close]

BLAST of ClCG06G004940 vs. TAIR 10
Match: AT2G33430.1 (differentiation and greening-like 1 )

HSP 1 Score: 109.8 bits (273), Expect = 3.9e-24
Identity = 58/109 (53.21%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 56  FNLPIRFKASGSGYSPLNDPSPNWSNRPPKETI-LLDGCDYEHWLIVMEFPNDPKPSEEE 115
           F++      SGS YSPLN  S N+S+RPP E   L  GCDYEHWLIVM+ P     ++++
Sbjct: 45  FSIRCGANRSGSTYSPLNSGS-NFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQ 104

Query: 116 MVNSYVKTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKEL 164
           M++ Y++TLA VVGSEEEAKK+IY+VS   Y GFG  I EE S K++ L
Sbjct: 105 MIDCYIQTLAKVVGSEEEAKKRIYNVSCERYLGFGCEIDEETSTKLEGL 152

[Close]

BLAST of ClCG06G004940 vs. TAIR 10
Match: AT1G11430.1 (plastid developmental protein DAG, putative )

HSP 1 Score: 109.4 bits (272), Expect = 5.0e-24
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 85  KETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAAVVGSEEEAKKKIYSVSTTT 144
           +ETI+L GCDY HWLIVMEFP DP PS ++M+++Y+ TLA V+GS EEAKK +Y+ STTT
Sbjct: 77  RETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTT 136

Query: 145 YTGFGALISEELSYKVKEL 164
           YTGF   I EE S K K L
Sbjct: 137 YTGFQCTIDEETSEKFKGL 155

The following BLAST results are available for this feature:

BLAST of ClCG06G004940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906658.1	3.7e-77	95.71	multiple organellar RNA editing factor 3, mitochondrial [Benincasa hispida]	[more]
XP_004150496.2	3.8e-74	93.29	multiple organellar RNA editing factor 3, mitochondrial [Cucumis sativus] >KGN47...	[more]
XP_008458407.1	1.9e-73	93.25	PREDICTED: multiple organellar RNA editing factor 3, mitochondrial-like [Cucumis...	[more]
XP_022959433.1	7.5e-70	89.94	multiple organellar RNA editing factor 3, mitochondrial [Cucurbita moschata]	[more]
KAG6575083.1	7.5e-70	89.94	Multiple organellar RNA editing factor 3, mitochondrial, partial [Cucurbita argy...	[more]

BLAST of ClCG06G004940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84JZ6	2.8e-51	69.09	Multiple organellar RNA editing factor 3, mitochondrial OS=Arabidopsis thaliana ...	[more]
Q9LKA5	9.9e-33	49.37	Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabido...	[more]
O22793	5.4e-23	53.21	Multiple organellar RNA editing factor 2, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q9LPZ1	7.1e-23	63.29	Multiple organellar RNA editing factor 9, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q38732	4.6e-22	43.14	DAG protein, chloroplastic OS=Antirrhinum majus OX=4151 GN=DAG PE=2 SV=1	[more]

BLAST of ClCG06G004940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCH1	1.9e-74	93.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318670 PE=4 SV=1	[more]
A0A1S3C8E0	9.2e-74	93.25	multiple organellar RNA editing factor 3, mitochondrial-like OS=Cucumis melo OX=...	[more]
A0A6J1H5X4	3.6e-70	89.94	multiple organellar RNA editing factor 3, mitochondrial OS=Cucurbita moschata OX...	[more]
A0A6J1C9B1	5.2e-69	87.12	multiple organellar RNA editing factor 3, mitochondrial-like OS=Momordica charan...	[more]
A0A6J1L4U9	6.4e-67	86.79	multiple organellar RNA editing factor 3, mitochondrial OS=Cucurbita maxima OX=3...	[more]

BLAST of ClCG06G004940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06790.2	2.0e-52	69.09	plastid developmental protein DAG, putative	[more]
AT3G06790.1	7.5e-52	68.48	plastid developmental protein DAG, putative	[more]
AT3G15000.1	7.0e-34	49.37	cobalt ion binding	[more]
AT2G33430.1	3.9e-24	53.21	differentiation and greening-like 1	[more]
AT1G11430.1	5.0e-24	63.29	plastid developmental protein DAG, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039206	MORF/ORRM1/DAG-like	PANTHER	PTHR31346	MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED	coord: 52..163
None	No IPR available	PANTHER	PTHR31346:SF1	MULTIPLE ORGANELLAR RNA EDITING FACTOR 3, MITOCHONDRIAL	coord: 52..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G004940.2	ClCG06G004940.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016554	cytidine to uridine editing
biological_process	GO:0080156	mitochondrial mRNA modification
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005739	mitochondrion