ClCG06G002640 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG06G002640
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionFiber protein fb11
LocationCG_Chr06: 3034881 .. 3039481 (-)
RNA-Seq ExpressionClCG06G002640
SyntenyClCG06G002640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAAGTATAAAAATATCAGATCATATAAGCGTTTTTAATGGCATCGTTTCTGAGCTGACGATGATTAGAGAGAAGATAGTTGATGAAGATAAGACACTAAGGTATTGTTGAAAATATGAAGTCTTGATACAAAAGAAGAGACTTAGATATTGTTCAAGCTACTAGTAAACTTCTATTAAAGGAAAGAAGTTTAAAGTAGTGAAAATAGATGAAATTAGATTTAATTTTTTATTAGACTTGCAAATTTTAAAAAAGCAGGGCTATATTTGCAAATATATTGTGTCTTTCTTTTTTCCTTTTCTACCCTTACGTCCGTGAGAAAGACGGGCATCAAAATCGGGTCGGTCCGGGTTATTTTGTATCCATAAAACCTTGCACTATTTTTCCGTCCGGTTCATTGAAGAAGTGCAAACCTTTTCACTCGTTAACTTTGGACTTTGAAGAATCAAGCCACGAACGTTCAGCTCAGGAAGCGAATCAGACGAAACTTTCGAGAAAATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCCGTGGTGGCTGCATCTTGTTTAATCGGAGGAATTGGTACTTAGTCTTTCCTGTTTAGAACCCTAATTATTGTTCAATTTTCCATTTCTTTTGATCGATGGCATGAAATCATAGGCCTTGTTTCATTTGTCGCTCAGATCTATCTATTCGGAAGTGCGTATTAAATAATTTGTTTTGGGTGTTCTATTTGACTAAGTAGATTTTCGTATTTGAATATTTTTCGTCGGATTCAGCTTAGCCAGTAAATATTTTGTTTCGGTGTTTGTAAAGACCATAAATTTGTTAAGATGTTGGGGGGATTTATTGGTTTAAATACTTATTAATGTTCGAGATGGGAGTTTTGGAACTTTGAGCAAAACTCTAAGAGGGAAGTTTTGTGAGAATGGAAAATCTTACACTCAAGCTGTGGCAATGAACTTAATGCAATGTGTTCCAATGTGACCTGCTGGGATTCCATTGGCGACTTTGGTTTTCGTGGCCTCTCTATTTTCAACCAAGCATGCTAAGCAAGATTGGAGGTCAATCCTAACTCCTAGTTGATTGTCAAAATTCTAAAAGGGACGTACTGAAAGAATGGAAAATTAGCATTGATTTCATTTGGACCTCCTTGCTAATGTTTCGGAAAGCATGAAGTGGAATAATTCTCTAGGACTTAAGCCAGAGCCACAAAAAAGGTGAGAGCTTCAGTAAGGTGAAATGTACAATAGATGTAAAAAATCCCTTAAGTATGAGATAGAGGAAAATAAGGATTAACTACTAAAGATGAACAACGGTTCATGTACATAGAATCTACAAAATCTTACAAATAAAATTCAAAGTCACGTTATGGATACCCTAAGAAGAGATATGTCTTCAGTAAATAGGTCCTCAGTTCCATATCTGCCATAACTAGTCTTATGTGATCCCTCACCTTTTGACAAAACAAAGGGCACACGTTGGGTGGGATGGGATGGATGAACAATTTTTAAAACGTTTTCTCTACCTAATTTAACTGTAGTTTATAAAAAGAATGTTGCATATCACTCAACAATGTGTGATGCTTCACCTAGCTTTAGCATCAAGTGTGCAAGCGCATGTCTTTTGTGAGCTTCTTAAAAATTAAATCAATGCTCCTAGTTATAGAGGAAAAATAGTTGCCACTTGCCAGTCTGTTAAATACTGATGTAACTGGACTTAGGGTTTGATTAAAAACATTTTCTGTGAGGAAGAAGCTGAGATAATTGTTAATATTCCTATCGCAGTTGGCAATGCAAGGGATAAAATTATATGGAATTTAGAATCTTGAGGTCTTTCTTCAGTTAAAATTGCTTGTATGTTCAGGTAATGAACTTCATAATAAATCTGAGGCTTCTTGCTCAGACTTATCAAATGTTGTAAAATTTTAGGGAATGAAAAGGGTGCTTTCTAATTTTAAAAACATTATAGTGAAAAGTTTACAATGTTATTATTCCTAGCAGTTTCAATTTGAAAAAGAAGGGTTTATATATTCATCCTTCACAGAGGAACTACGATCTATTCCATTCGGAAATGTTTTGCAAGATTGATTTGGGGACATGTGTTCCCACAATGGGATTTAAGTTCCACTGAGAATTTGGTATCACTGAGAACTGGGCATCAGCAGATCTTAGATTTGTTAATGGTTGAAATCTTTTGTCAATTTTGTTTGAGTAAATTGTAGCAAAAATGGACTTTATTCAGGGGAATAATGCCAAAACGATATTGAACAATGGATAGATACACAAATTGGATCTGAATCAAAATAATCATGCTTTTAGTTCAAGAAATGTTATCGTGACATAGTGCCTTCCACATACTGTGATGTTAAACATGAACTCATATGCTGCAATGTTTGAAAAAAAGATATCGACAGGTTAGGTTGGGTTGGTTGAATATCAACAATTTGATCTTCACTGTAGAACAAAATTTTTAGAGGGGTGGAGAGTGTTTGGAGGAAAATTGGTCCTTGTGGGGTTTCATGTCTCTCTTCATACCATATAATGGTTTTTGTAATTATCCCTCTAAATATCATTTTTGTTACATTGGAGTCCGTTTTGGCATTTGGTTCATTTTTTTGGGGTGGAGAGTGCTTGGCACAATTTGTAGTGTTATCTTTTTGTACACTTCTTGTGTTATTTCATTTTTTCGCAATGACACATGGTTTACATTTAAACAAAAAAGGATCTTCACCATACTATTTGCTTTGCCTTTCATTTAGCTGCTTCCTTTCCTGTGGGTCTCTGGTGGAATCTTTATCTCTTGTGCTCTCGACTTCAATAAATGCTTTTTCACAACCCCGTGACTGCATGATTATTAAAATTTACTATCCGCTTGTCCTTGTTTGTTAAGGAATTTGTCTCTGCTTTCTTCATTCTACTCAAACAAAGCTACCCCTAAAATGCCTGATGGAACACATCACGTCACCACATCAGAAACAACAACTTATTCCACAGTTTTTACAATGTCGTCTCACTTAAAATAACATCTACTTATAACTTGTATAGAAAAGCCTTTTGCAGATTTTCTATTATCTTTTGACCTAGCAATCTTATATTTTGTTCCCATCTTTCAAATTTTCACGACCAAATCCAACTTCAGCCGACAACCCCCCCCGCCCCGCCCCCACCCCGGTGCTTCCCAACACTCCTATGACTAGTGATCTACCAGAGTTTGAAGCCTCTACCTGCATAAGTATACCAACTAGTCACAAGTTGTCAAATGAACTACAATGATAGGACCCCAGTGAGAAGAAAATAACATTAGAACTATAATGCAATGTCAAAGAAAATTTACAACGATCAAATCCCTTTGAGAGGACTATTTCTTTTTCATGCGACAACTAATTCACAAAGTTTTGCAAATTTACAAAGTTCTGCAGAACTTTACTCTCACTATTCTGCTTTGCTAGCTCCTCGAAACTCAAACCCTTCTTCAACATGCCCCTATCCAGTAAGGTCAGTTCTTTCTTGGTTTGCTATTATAGTTACTCATTACCTTCCACCTCAACAACTTCTCAGGTAATTACAAATATGCCCTTGTTCAGTGTCAATATCCCTAATATTATTCCCTACAGGTACTCTTAACATATATGGGAACAAAAACCACTATCCCTGTCATTTAAAGCTGTCTCTAGAAAGTGGGAACTTCACTAGTTACGTTAATACCATTTAATTCACCATAAACTTCATCTCCTTATCAGTTCTTCCATTTGAAGATCTCTTCTGAGTTTTGTCTTCCTTGATCCCATTCTATTTATTCTTGAAGCATTGCTGATTCATCTAGCATTTTCACTGCCAAAATCAAATTTTTTTGTACTACAATGAGGAACCACAACTCTTGGAAGTTAAGCATGACATCACCACAACTTTTGGAAGCTAAGTGTCACGGTCATGCTTGTCCAGGGCGTGTTGCCCGTGGCCGCATGCCCGCCTCAACCCCTTTTTATCATGCTTTCACCTTATGTATTTCATTTTTACTAGTTAGTTTACTTTCCTAGTACTTTTCTTTGTAAGTGACCGCTTGCCACTTTGCATGTGCAAGAGTGACAATCCTAAAATTGTTCAGAATGTACTATATGGGGGTGAGACTAACCATCAAATCCTCATATCCGGAGTTGTGAGCTATAAAGCCGTTGTTGTCCCTTTTTGCTTTCTAGCCTTACAACACATCTTAATTTCTCAAACATGCTTTCAAACGTTTGCGAAATCCTTTTCCTCTAAAAACCCGTTTTCCAAAACCATTTTCCTTGGAACGGGGCCAGAGGTTATGAGAGGCACTCGGTGTGCCGTAGGCGATCAGAATTTGATCAGGCTGACTTGTTCACGAGCTAGAACAAGTGCCGCACAATCGTTTAGTCCAGTGTAGAACTACGATTGTGACAGTTGGTATCAGAGCCAAGTCGGCTCACAAGAGAGAAGGCCAGAATTATGTCGACCGCGAAACAGTTAACCAAGTCGCAAGTGGACCGACTGGTGGAGATAGAAGAGCAGATGCTCTACCTGAGAGAAGTTCCCGATGCCCTCCGTTTCCTAGAAACACGAGTACAAGAAATCTCTGA

mRNA sequence

ATGGAGGAAAGTATAAAAATATCAGATCATATAAGCGTTTTTAATGGCATCGTTTCTGAGCTGACGATGATTAGAGAGAAGATAGTTGATGAAGATAAGACACTAAGAATCAAGCCACGAACGTTCAGCTCAGGAAGCGAATCAGACGAAACTTTCGAGAAAATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCCGTGGTGGCTGCATCTTGTTTAATCGGAGGAATTGAACTTTACTCTCACTATTCTGCTTTGCTAGCTCCTCGAAACTCAAACCCTTCTTCAACATGCCCCTATCCAGTAAGGTCAGTTCTTTCTTGGTTTGCTATTATAGTTACTCATTACCTTCCACCTCAACAACTTCTCAGAGCCAAGTCGGCTCACAAGAGAGAAGGCCAGAATTATGTCGACCGCGAAACAGTTAACCAAGTCGCAAGTGGACCGACTGGTGGAGATAGAAGAGCAGATGCTCTACCTGAGAGAAGTTCCCGATGCCCTCCGTTTCCTAGAAACACGAGTACAAGAAATCTCTGA

Coding sequence (CDS)

ATGGAGGAAAGTATAAAAATATCAGATCATATAAGCGTTTTTAATGGCATCGTTTCTGAGCTGACGATGATTAGAGAGAAGATAGTTGATGAAGATAAGACACTAAGAATCAAGCCACGAACGTTCAGCTCAGGAAGCGAATCAGACGAAACTTTCGAGAAAATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCCGTGGTGGCTGCATCTTGTTTAATCGGAGGAATTGAACTTTACTCTCACTATTCTGCTTTGCTAGCTCCTCGAAACTCAAACCCTTCTTCAACATGCCCCTATCCAGTAAGGTCAGTTCTTTCTTGGTTTGCTATTATAGTTACTCATTACCTTCCACCTCAACAACTTCTCAGAGCCAAGTCGGCTCACAAGAGAGAAGGCCAGAATTATGTCGACCGCGAAACAGTTAACCAAGTCGCAAGTGGACCGACTGGTGGAGATAGAAGAGCAGATGCTCTACCTGAGAGAAGTTCCCGATGCCCTCCGTTTCCTAGAAACACGAGTACAAGAAATCTCTGA

Protein sequence

MEESIKISDHISVFNGIVSELTMIREKIVDEDKTLRIKPRTFSSGSESDETFEKMPVMEKLKMFVVQEPVVAASCLIGGIELYSHYSALLAPRNSNPSSTCPYPVRSVLSWFAIIVTHYLPPQQLLRAKSAHKREGQNYVDRETVNQVASGPTGGDRRADALPERSSRCPPFPRNTSTRNL
Homology
[Close]
BLAST of ClCG06G002640 vs. NCBI nr
Match: KAG7013814.1 (hypothetical protein SDJN02_23983 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-05
Identity = 36/67 (53.73%), Postives = 42/67 (62.69%), Query Frame = 0 

Query: 55  MPVMEKLKMFVVQEPVVAASCLIGGIELYSHYSALLAP--RNSNPSSTCPYPVRSVLSWF 114
           MPVMEKLKMFVVQEPVV ASCLIGGI L+    A++ P   +   S   P PV S +   
Sbjct: 1   MPVMEKLKMFVVQEPVVVASCLIGGIGLF--LPAVVRPILDSYEASKQAPQPVLSDVEGL 60

Query: 115 AIIVTHY 120
           + I  HY
Sbjct: 61  SCITNHY 65

[Close]
BLAST of ClCG06G002640 vs. NCBI nr
Match: KAA8516192.1 (hypothetical protein F0562_019371 [Nyssa sinensis])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 35  LRIKPRTFSSGSESDETFEKMPVMEKLKMFVVQEPVVAASCLIGGIELY 84
           LRI     S+  E+ +  E+MPVMEKLKMFVVQEPVVAASCLI GI L+
Sbjct: 497 LRILGPLPSTERETRQLEEEMPVMEKLKMFVVQEPVVAASCLIAGIGLF 545

[Close]
BLAST of ClCG06G002640 vs. NCBI nr
Match: ESQ39300.1 (hypothetical protein EUTSA_v10001742mg, partial [Eutrema salsugineum])

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-04
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 38 KPRTFSSGSESDETFEKMPVMEKLKMFVVQEPVVAASCLIGGIELY 84
          K  T S    S+    KMPVMEKL+MFV QEPVVAASCLIGG+ L+
Sbjct: 13 KTSTSSENFVSNRIVGKMPVMEKLRMFVAQEPVVAASCLIGGVGLF 58

[Close]
BLAST of ClCG06G002640 vs. NCBI nr
Match: XP_027115476.1 (uncharacterized protein LOC113733330 [Coffea arabica] >XP_027161062.1 uncharacterized protein LOC113762025 [Coffea eugenioides] >CDP08658.1 unnamed protein product [Coffea canephora])

HSP 1 Score: 55.8 bits (133), Expect = 4.4e-04
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 55  MPVMEKLKMFVVQEPVVAASCLIGGIELYSHYSALLAP--RNSNPSSTCPYPVRS 108
           MPVMEKLKMFVVQEPVVAASCLIGGI L+    A++ P   +   S   P PV S
Sbjct: 1   MPVMEKLKMFVVQEPVVAASCLIGGIGLF--LPAVVRPILDSFESSKQVPQPVLS 53

[Close]
BLAST of ClCG06G002640 vs. NCBI nr
Match: XP_038875998.1 (uncharacterized protein LOC120068338 [Benincasa hispida])

HSP 1 Score: 55.5 bits (132), Expect = 5.7e-04
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 0 

Query: 55 MPVMEKLKMFVVQEPVVAASCLIGGIELY 84
          MPVMEKLKMFVVQEPVVAASCLIGGI L+
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLF 29

[Close]
BLAST of ClCG06G002640 vs. ExPASy TrEMBL
Match: A0A5J4ZEW9 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_019371 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.3e-05
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 35  LRIKPRTFSSGSESDETFEKMPVMEKLKMFVVQEPVVAASCLIGGIELY 84
           LRI     S+  E+ +  E+MPVMEKLKMFVVQEPVVAASCLI GI L+
Sbjct: 497 LRILGPLPSTERETRQLEEEMPVMEKLKMFVVQEPVVAASCLIAGIGLF 545

[Close]
BLAST of ClCG06G002640 vs. ExPASy TrEMBL
Match: V4KN18 (Uncharacterized protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10001742mg PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 38 KPRTFSSGSESDETFEKMPVMEKLKMFVVQEPVVAASCLIGGIELY 84
          K  T S    S+    KMPVMEKL+MFV QEPVVAASCLIGG+ L+
Sbjct: 13 KTSTSSENFVSNRIVGKMPVMEKLRMFVAQEPVVAASCLIGGVGLF 58

[Close]
BLAST of ClCG06G002640 vs. ExPASy TrEMBL
Match: A0A068UM29 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00027698001 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-04
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 55  MPVMEKLKMFVVQEPVVAASCLIGGIELYSHYSALLAP--RNSNPSSTCPYPVRS 108
           MPVMEKLKMFVVQEPVVAASCLIGGI L+    A++ P   +   S   P PV S
Sbjct: 1   MPVMEKLKMFVVQEPVVAASCLIGGIGLF--LPAVVRPILDSFESSKQVPQPVLS 53

[Close]
BLAST of ClCG06G002640 vs. ExPASy TrEMBL
Match: A0A6P6WLJ8 (uncharacterized protein LOC113733330 OS=Coffea arabica OX=13443 GN=LOC113733330 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-04
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 55  MPVMEKLKMFVVQEPVVAASCLIGGIELYSHYSALLAP--RNSNPSSTCPYPVRS 108
           MPVMEKLKMFVVQEPVVAASCLIGGI L+    A++ P   +   S   P PV S
Sbjct: 1   MPVMEKLKMFVVQEPVVAASCLIGGIGLF--LPAVVRPILDSFESSKQVPQPVLS 53

[Close]
BLAST of ClCG06G002640 vs. ExPASy TrEMBL
Match: A0A0A0KFJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G103010 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-04
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 0 

Query: 55 MPVMEKLKMFVVQEPVVAASCLIGGIELY 84
          MPVMEKLKMFVVQEPVVAASCLIGGI L+
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLF 29

[Close]
BLAST of ClCG06G002640 vs. TAIR 10
Match: AT2G46540.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 4.5e-07
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 0 

Query: 55 MPVMEKLKMFVVQEPVVAASCLIGGIELY 84
          MPVMEKL+MFV QEPVVAASCLIGG+ L+
Sbjct: 1  MPVMEKLRMFVAQEPVVAASCLIGGVGLF 29

The following BLAST results are available for this feature:
BLAST of ClCG06G002640 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013814.11.8e-0553.73hypothetical protein SDJN02_23983 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAA8516192.11.5e-0465.31hypothetical protein F0562_019371 [Nyssa sinensis][more]
ESQ39300.12.6e-0463.04hypothetical protein EUTSA_v10001742mg, partial [Eutrema salsugineum][more]
XP_027115476.14.4e-0461.82uncharacterized protein LOC113733330 [Coffea arabica] >XP_027161062.1 uncharacte... [more]
XP_038875998.15.7e-0493.10uncharacterized protein LOC120068338 [Benincasa hispida][more]
BLAST of ClCG06G002640 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG06G002640 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5J4ZEW97.3e-0565.31Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_019371 PE=4 SV=1[more]
V4KN181.2e-0463.04Uncharacterized protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v100... [more]
A0A068UM292.1e-0461.82Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00027698001 PE=4 ... [more]
A0A6P6WLJ82.1e-0461.82uncharacterized protein LOC113733330 OS=Coffea arabica OX=13443 GN=LOC113733330 ... [more]
A0A0A0KFJ92.8e-0493.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G103010 PE=4 SV=1[more]
BLAST of ClCG06G002640 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G46540.14.5e-0782.76unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G002640.2ClCG06G002640.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane