ClCG06G001080 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G001080
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Trigger_N domain-containing protein
Location	CG_Chr06: 1048613 .. 1052547 (+)
RNA-Seq Expression	ClCG06G001080
Synteny	ClCG06G001080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCCGCCACCGCCACCGCAACTGCAACGGTAACCGACATTGCTTCAGAATTCCGGCGGCCAATATTCACCAAAGTAAGCAATTCTATGCATTAGCCTTTTTCGATTCTAAATATTCCTCAGAAACCAAACCAATGACTCGAATCTCTAAGCTCCACCGCATTTTGCGGCCTTCCGATAAGTTTAGGATATTTTCACTTCAAATTCGCTTTTTGTGTTTCAGGTTCCTGTTAAGGGCTATTGCCGCAATGCCCTGGTTTGTCTAAACTTTGGAGGTGTTGAATTTGATAATGTACAAGATGGGTTGTGTAGGAGGTAAACATGTATTTTGGTTAGTTTCCAATTTCGATGTTGATTCTTAATTTCTTGTTTGTTTAATGAGAAGTGTAATGACATATATAGCTCGTTCGTTTTCTATTTGGTGAATTGTGCATAAAAACTGATGGATAGAAGTGGGGAACATTTTTTCATTGCCAGGTCGTCATTTTCTTATAGTCCCCATAAAATGGGTTCCAGATTTTTGTCCAAACCGACGTCCGTAGCTAGTTCAGGTAATTCTGCATACTTCGTTATCATCTTGGTTGAACCTTTTACAGTAAAGACTGAATTACAAATTTTAAACTATAAGAACTAAGTCGTTTCATACTTAAAGTTGATTAAGTCGGTTATTGGAAATTTTAATCTACAGGAATCAAATTGTTAGATACTGAGGTTCGTGGACTAATTGAATTGTTTTATTTGATAGTATATTTTAACCTTTACAATTATTCTTTTCTGCTCGTCCCCTTGTTTTCTGGGAGTTTAGTTTATTTTTAATGTAGGATGGGAAGAGAAGTACAAAAATAGAGTAATTGGGAAGCGAATGACACAAGTAAGATATTATTACTGGTGAATTCCTGTTTAGTATGCACGAAGAGAAGCAAGCATTATTATCTTCTATATCATGTATTAGAAAATTGTAATAAATCGTTGGTAAGAACACAATAACGGTTTTGAATATTGCAAATCATGCTTATGTAACATGATTGTAGCCCTAATAAATCATGGGTAAGAAACACAATAACAGATTTGGTAAAACTTATCCCCGTTTTGTCATTATTTTGTGAGTTATTAACAGTCACTTGTCAATCAACTCTAGTTGTACAAAAAAGACCCTTTCAGCTTAGGCTTATGTTGTTTTGTTGGTCTTCTGTTTTGATGTCATAGGTTTCGAGGCAGCCATCACAGATTACAAAGGCAATGCAATAACGTTGAAAAATGCTAAAGTAGTTGTAGAATCTGAAGATGAAAACCAGATACAAGTAAGGCTTACCCATGTGAACTAGTTGAAGCATCCATTACAATTTTTGTTGCAGCATAGAGTTTTTTTTTTTTTTTTTCCTTTCCTTTCTTTTCTTTTTTTAATTAAACTTTAAGAATCAATTTTGTTAATGGTATGAAATTACGAAAGAAGGGGGAAAAACCTACTCCAAATGAGACTCTCCAATTGGATATAAAAGAAGCATGGTGAAAGAGATGAGAGCATTCACACTAAGAAATTGTCGTAAAAGCGATAGAAGAAAGCCCTTGTAAAGTGCATCCATAAGAGCTTTTTTTCTTAGTTGAAAGGATGACCCCCAAAAACATACTAGAGGAGGAGGAGGAGATTTTGAGGGAGAGCTGTATGTCGACCCCCCAAAGCATGATAGTTGCCCCCATAATTTTGATGCAAATTTGCAGGACACAGAAAGACCTTGAGACTTAGGAGCTGTCTATGCGCATGACACAAACTACTAGACTTTGTTCAAGAAAATAATGCATCCTTGAGATACCACTGTCTCAATATCTAATCTCTCACTCTCCCAATGCCACCTCACTTAGTTACAACTTCTGCCCACCAAAGTTTAAGAACAATCTACTCTCAATGTAAGATTTTGTTAGGAATGTTAGCAGGGAACTATTTGGGATATTATTAGGTTATTTGGAGGGCATAGTTTGTTAGAAAAGAGGTTATAAACGCAGTTGCATAGAGGGGTTTGAGATAGGCAGAGTGTAGACATTTTGGGAGAGTCCACGCCTCTCAAAGTGTTTGGTTTTCGTAAATTTTCTTTTATATGGGAATACAATTTAAGTGTTATTTTCTTACTTCCATTCTCAATCAAAATTGGGTTCCTATCATCCTTCCCTTTATCATCCTTCCCTTTCATGTTATCTTTGGAACGCATTTATTGTTAGTGACCTATAAAAAATGTCTAATGAAATATTATTAACAGCTAAGAGTGGACTTGACTGGGGATGAGACACAAAAGGTATTTGATCAAGTTTTGGCAAACTTAGCCCGTTCAGCACCACCAATGCCAGGATTTCGTAGGCAAAAAGGAGGTAGTACCACGATTTTCCTCCTCTTCCACCTCGAATGTTACAACCATTCATTCATTTGCAACATAAGTCTTGTACATGTTCACTATCCATGTAGACAAATATGGGAATTGAGAAGTGCCTTTCCTGTCCATATGCGTTCATATGTGTAGCTGCTTTTACAGCTTATAAGTTCTTATTTCTCATAGCAGATGACTTGACTTTATATGGTTTCTAATGTTTTCCTGTCTTCATGCCGTGGATGCTTTGCCAGGGAAAACATCAAATGTGAGTTGCTTCTCTTTGCTTTTTATACTTTACCCTTTGGGTTTCCAAAAATTTTCAAATTCGTTGTTTAGTTCTAACTCATTGAATATATGCCTTGTCATCTTTGATAATATTCCCAAGTTTTGGTATTTTTATTTGTAATGATTTAGTTTTGATGTTTTATTGTGAACACATTTGAGTCATCGAGTTACAAATCTTATTATGAAGTTGATTGGAAAATAATCTGTTCATGAAATATGGGCAAGTTATAAGAGGTGCTTCTCGCACTTTAGCCTCGAACATTTGTTTTTTGATTTGGTTAAATTTGATTTCACTCATGATTCATTTTTTCTCAGTATCCTTATTCATTTTTTGGCATGTTATGCGGGGATTTACATCCTAGTTACAAATAGTATTCTATTCTTCCACAAGGTTTTTATTTCTCAATAATTAATTCCTCCAGGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGACCGAGTCACGAAGTTTGTCATACAAGAAATATTGAACTCAACTATGGCAGATTATGCAAAGAAGGCAAGTTTTATCCTCATTGCTTTGCTTCTTATACCTAGTGCCTACGTGGTGATTGTAACTTGGAGATGTTTTTAAATTGGTTTTTCTAGATAGCTTGTAGAAGTCAATGATATTTGGGTAAATAAAATCACTATCCATGAACAACACACCATTTCAAAAGATATAACAAATTTTACGAATAGACAAATGTCTTGTTAATTTGGCTTGGCGTGGCTAACAAATGATGGATGGAAAGAAGTTAACCGCTGGATAAAATAGGAGTGACATGGTTTATGGATTGAATTTGATATATTACTTCAAAGTAAATGATATGTTTCATGTGTTGCCTTCTTTTGTTAAAGTTGTCCATTTGCCTTTATTATTTGTCTAGTTGTGCCCAATCAACTGGTGTCTATCTAATTAGAGCATATGATGTTACCATCTAGTAAATTGTATTGATGTTAGAAAATAGATATACTATAATAAAACCATTCAAAATTTAAATAACTAATTGATTTTTTTTTAAGTTCAAAGACTAAATGGACATGGTTCACAATTAAATTTGTAATTTATCCAAATGTGATTATCCAAATATCAAAAACATAAGCTCTTTTTTTTTTTCTTTTTTCTTTGGACTCCAATACAGGAAAACATAAATGTAAAGGACAAGAAGGTTAACACAACACAAACAGCAGATGAACTGAAAGTATTGTTTAGTCCAGGAAAAGATTTTGGTTTCAATGCCATACTTGAACTTGAATCTGGTTCAGATGGTGAAAATTGA

mRNA sequence

ATGGTGTCCGCCACCGCCACCGCAACTGCAACGGTAACCGACATTGCTTCAGAATTCCGGCGGCCAATATTCACCAAAGTTCCTGTTAAGGGCTATTGCCGCAATGCCCTGGTTTGTCTAAACTTTGGAGGTGTTGAATTTGATAATGTACAAGATGGGTTGTGTAGGAGGTCGTCATTTTCTTATAGTCCCCATAAAATGGGTTCCAGATTTTTGTCCAAACCGACGTCCGTAGCTAGTTCAGGTTTCGAGGCAGCCATCACAGATTACAAAGGCAATGCAATAACGTTGAAAAATGCTAAAGTAGTTGTAGAATCTGAAGATGAAAACCAGATACAACTAAGAGTGGACTTGACTGGGGATGAGACACAAAAGGTATTTGATCAAGTTTTGGCAAACTTAGCCCGTTCAGCACCACCAATGCCAGGATTTCGTAGGCAAAAAGGAGGGAAAACATCAAATGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGACCGAGTCACGAAGTTTGTCATACAAGAAATATTGAACTCAACTATGGCAGATTATGCAAAGAAGGAAAACATAAATGTAAAGGACAAGAAGGTTAACACAACACAAACAGCAGATGAACTGAAAGTATTGTTTAGTCCAGGAAAAGATTTTGGTTTCAATGCCATACTTGAACTTGAATCTGGTTCAGATGGTGAAAATTGA

Coding sequence (CDS)

ATGGTGTCCGCCACCGCCACCGCAACTGCAACGGTAACCGACATTGCTTCAGAATTCCGGCGGCCAATATTCACCAAAGTTCCTGTTAAGGGCTATTGCCGCAATGCCCTGGTTTGTCTAAACTTTGGAGGTGTTGAATTTGATAATGTACAAGATGGGTTGTGTAGGAGGTCGTCATTTTCTTATAGTCCCCATAAAATGGGTTCCAGATTTTTGTCCAAACCGACGTCCGTAGCTAGTTCAGGTTTCGAGGCAGCCATCACAGATTACAAAGGCAATGCAATAACGTTGAAAAATGCTAAAGTAGTTGTAGAATCTGAAGATGAAAACCAGATACAACTAAGAGTGGACTTGACTGGGGATGAGACACAAAAGGTATTTGATCAAGTTTTGGCAAACTTAGCCCGTTCAGCACCACCAATGCCAGGATTTCGTAGGCAAAAAGGAGGGAAAACATCAAATGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGACCGAGTCACGAAGTTTGTCATACAAGAAATATTGAACTCAACTATGGCAGATTATGCAAAGAAGGAAAACATAAATGTAAAGGACAAGAAGGTTAACACAACACAAACAGCAGATGAACTGAAAGTATTGTTTAGTCCAGGAAAAGATTTTGGTTTCAATGCCATACTTGAACTTGAATCTGGTTCAGATGGTGAAAATTGA

Protein sequence

MVSATATATATVTDIASEFRRPIFTKVPVKGYCRNALVCLNFGGVEFDNVQDGLCRRSSFSYSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN

Homology

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BLAST of ClCG06G001080 vs. NCBI nr
Match: XP_038906537.1 (uncharacterized protein LOC120092511 [Benincasa hispida])

HSP 1 Score: 416.0 bits (1068), Expect = 2.1e-112
Identity = 212/229 (92.58%), Postives = 220/229 (96.07%), Query Frame = 0


Query: 5   TATATATVTDIASEFRRPIFTKVPVKGYCRNALVCLNFGGVEFDNVQDGLCRRSSFSYSP 64
           +ATATAT T+IASEFR PIFT+VPVKGYCRN LVCLNFGGVEFDNVQDGLCRRSSFSYS 
Sbjct: 3   SATATATATNIASEFRWPIFTQVPVKGYCRNPLVCLNFGGVEFDNVQDGLCRRSSFSYSS 62

Query: 65  HKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQ 124
           HK+GSRFLSKPTS+ASSG EAAITDYKGNAITLKNAKVVVESE+EN+IQLRVDLTGDETQ
Sbjct: 63  HKVGSRFLSKPTSIASSGLEAAITDYKGNAITLKNAKVVVESEEENKIQLRVDLTGDETQ 122

Query: 125 KVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMAD 184
           KVFDQVL NLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRV KFVIQEILNSTMAD
Sbjct: 123 KVFDQVLTNLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVIKFVIQEILNSTMAD 182

Query: 185 YAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN 234
           YAKKENINVKDKKVNTTQTADELKVLFSPGK+FGFNAILELES SD EN
Sbjct: 183 YAKKENINVKDKKVNTTQTADELKVLFSPGKEFGFNAILELESASDAEN 231

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BLAST of ClCG06G001080 vs. NCBI nr
Match: XP_011656737.1 (uncharacterized protein LOC101212225 [Cucumis sativus] >KGN46335.1 hypothetical protein Csa_004841 [Cucumis sativus])

HSP 1 Score: 415.6 bits (1067), Expect = 2.8e-112
Identity = 211/233 (90.56%), Postives = 224/233 (96.14%), Query Frame = 0


Query: 1   MVSATATATATVTDIASEFRRPIFTKVPVKGYCRNALVCLNFGGVEFDNVQDGLCRRSSF 60
           M+SATATATATVT+IASEF RPIFTKVPVKGYC NALVCLNFGGVEFDNV+DGLCRRSSF
Sbjct: 1   MMSATATATATVTNIASEFPRPIFTKVPVKGYCHNALVCLNFGGVEFDNVRDGLCRRSSF 60

Query: 61  SYSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTG 120
           SYS HK+GSRFLSKPTS+ASSG EAAITDYKGN ITLKNAKVVVESE+EN+IQLRVDLTG
Sbjct: 61  SYSFHKIGSRFLSKPTSIASSGLEAAITDYKGNPITLKNAKVVVESEEENKIQLRVDLTG 120

Query: 121 DETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNS 180
           DETQKVFDQVL NLARSAPPMPGFR+QKGGKTSNVPKSFLLEVLGKDRVTKF+IQEILNS
Sbjct: 121 DETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFIIQEILNS 180

Query: 181 TMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN 234
           TM DYAKKENINVKDKKV+TTQTADELKVLF+PGK+FGFNAILELES SD E+
Sbjct: 181 TMVDYAKKENINVKDKKVSTTQTADELKVLFNPGKEFGFNAILELESASDAES 233

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BLAST of ClCG06G001080 vs. NCBI nr
Match: XP_008460020.1 (PREDICTED: uncharacterized protein LOC103498959 [Cucumis melo])

HSP 1 Score: 412.5 bits (1059), Expect = 2.4e-111
Identity = 212/234 (90.60%), Postives = 224/234 (95.73%), Query Frame = 0


Query: 1   MVSATATATATVTDIA-SEFRRPIFTKVPVKGYCRNALVCLNFGGVEFDNVQDGLCRRSS 60
           M+SATATATATVT+IA SEF RPIFTKV VKGYC NALVCLNFGGVEFDNVQDGLCRRSS
Sbjct: 1   MMSATATATATVTNIASSEFPRPIFTKVSVKGYCHNALVCLNFGGVEFDNVQDGLCRRSS 60

Query: 61  FSYSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLT 120
           FSYS H++GSRFLSKPTS+ASSG EAA+TDYKGNAITLKNAKVVVESE+EN+IQLRVDLT
Sbjct: 61  FSYSSHRIGSRFLSKPTSIASSGLEAALTDYKGNAITLKNAKVVVESEEENKIQLRVDLT 120

Query: 121 GDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILN 180
           GDETQKVFDQVL NLARSAPPMPGFR+QKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILN
Sbjct: 121 GDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILN 180

Query: 181 STMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN 234
           STMADYAKKENINVKD KVNTTQTADELKVLF+PGK+FGFNAILELES SD E+
Sbjct: 181 STMADYAKKENINVKDNKVNTTQTADELKVLFNPGKEFGFNAILELESASDAES 234

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BLAST of ClCG06G001080 vs. NCBI nr
Match: XP_022155406.1 (uncharacterized protein LOC111022553 [Momordica charantia])

HSP 1 Score: 382.9 bits (982), Expect = 2.0e-102
Identity = 191/224 (85.27%), Postives = 210/224 (93.75%), Query Frame = 0


Query: 6   ATATATVTDIASEFRRPIFTKVPVKGYCRNALVCLNFGGVEFDNVQDGLCRRSSFSYSPH 65
           A+ATATVT++ASE+RR  F KVPVKGYCR+ L C N GGVEFDNVQ+GLCRRSSFS SPH
Sbjct: 2   ASATATVTNLASEYRRASFIKVPVKGYCRSVLACSNSGGVEFDNVQNGLCRRSSFSCSPH 61

Query: 66  KMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQK 125
           K+GSRFLS+PTS+ASSG EAAITDYKGNAI LKNAK+VVESEDEN IQLRVDL+GDETQK
Sbjct: 62  KLGSRFLSRPTSIASSGLEAAITDYKGNAIALKNAKIVVESEDENLIQLRVDLSGDETQK 121

Query: 126 VFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADY 185
           +FDQVL NLARSAPPMPGFR QKGGKTSNVPKSFLLEVLG++RVTKFVIQEILNSTMADY
Sbjct: 122 IFDQVLTNLARSAPPMPGFRMQKGGKTSNVPKSFLLEVLGEERVTKFVIQEILNSTMADY 181

Query: 186 AKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGS 230
           AKKEN+NVKDKKVNTTQTADELK+LF+PGK+FGFNAILELES +
Sbjct: 182 AKKENVNVKDKKVNTTQTADELKLLFTPGKEFGFNAILELESAN 225

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BLAST of ClCG06G001080 vs. NCBI nr
Match: XP_023004174.1 (uncharacterized protein LOC111497577 [Cucurbita maxima])

HSP 1 Score: 373.6 bits (958), Expect = 1.2e-99
Identity = 198/239 (82.85%), Postives = 213/239 (89.12%), Query Frame = 0


Query: 1   MVSATATATATVTDIASEFRRPIFTKVPVKGYCRNALVCLNFGGVEFDNVQDGLCRRSSF 60
           M SATATATATV +IASEFRRP+FTKVPV G  RNAL+C+NFGGVEF+NVQD LC RSS 
Sbjct: 1   MASATATATATVANIASEFRRPVFTKVPVNGRRRNALICMNFGGVEFENVQDRLCTRSSV 60

Query: 61  SYSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTG 120
           SYS   +GSRFLS+PT++ASSG EAAITDYKG AITLKNAK+VVESEDEN+IQLRV+LTG
Sbjct: 61  SYSLLVVGSRFLSRPTAIASSGLEAAITDYKG-AITLKNAKIVVESEDENKIQLRVNLTG 120

Query: 121 DETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNS 180
           DETQKVFDQVL NLARSAPPMPGFR+QKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNS
Sbjct: 121 DETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNS 180

Query: 181 TMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELE------SGSDGEN 234
           TMADYAKKENI VKDK VNTTQT DELKVLF PGK+FGFNAILELE      S S+ EN
Sbjct: 181 TMADYAKKENIKVKDKMVNTTQTEDELKVLFRPGKEFGFNAILELELEPELDSASEDEN 238

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BLAST of ClCG06G001080 vs. ExPASy Swiss-Prot
Match: Q8YQX9 (Trigger factor OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=tig PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.7e-08
Identity = 39/126 (30.95%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 101 KVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFL 160
           KV  E    +QI L +++T + TQK ++QV+ NL+R+   +PGFR+ K      VP+  L
Sbjct: 2   KVTQEKLPASQIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRKGK------VPRQVL 61

Query: 161 LEVLGKDRVTKFVIQEILNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFN 220
           L+ LGK  +    ++E+L   +    K+E+I    +      + D+L   + PG+   F 
Sbjct: 62  LQRLGKTHIKAAALEELLQDGIEQAIKQESIAAIGQP-RLRSSFDDLINSYEPGQPLTFT 119

Query: 221 AILELE 227
           A +++E
Sbjct: 122 AAVDVE 119

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BLAST of ClCG06G001080 vs. ExPASy Swiss-Prot
Match: Q3M725 (Trigger factor OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=tig PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.7e-08
Identity = 39/126 (30.95%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 101 KVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFL 160
           KV  E    +QI L +++T + TQK ++QV+ NL+R+   +PGFR+ K      VP+  L
Sbjct: 2   KVTQEKLPASQIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRKGK------VPRQVL 61

Query: 161 LEVLGKDRVTKFVIQEILNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFN 220
           L+ LGK  +    ++E+L   +    K+E+I    +      + D+L   + PG+   F 
Sbjct: 62  LQRLGKTHIKAAALEELLQDGIEQAIKQESIAAIGQP-RLRSSFDDLINSYEPGQPLTFT 119

Query: 221 AILELE 227
           A +++E
Sbjct: 122 AAVDVE 119

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BLAST of ClCG06G001080 vs. ExPASy Swiss-Prot
Match: B1XL18 (Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=tig PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-07
Identity = 35/125 (28.00%), Postives = 66/125 (52.80%), Query Frame = 0


Query: 101 KVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFL 160
           KV+ E    +Q+ L +++  D TQK +D  +  LAR+   +PGFR+ K      VPK  L
Sbjct: 2   KVIQEKLPASQVGLEIEVPADVTQKAYDDTVRKLARTV-NLPGFRKGK------VPKQIL 61

Query: 161 LEVLGKDRVTKFVIQEILNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFN 220
           ++ LG +R+   V++++++ ++     +ENI           + D+L   + PG+   F 
Sbjct: 62  IQRLGPNRIKASVLEDLIDDSLKAAIAQENIEALG-NFQLKSSFDDLISAYKPGEASSFK 118

Query: 221 AILEL 226
           A +++
Sbjct: 122 AAVDV 118

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BLAST of ClCG06G001080 vs. ExPASy Swiss-Prot
Match: B2IT89 (Trigger factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=tig PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-05
Identity = 37/126 (29.37%), Postives = 66/126 (52.38%), Query Frame = 0


Query: 101 KVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFL 160
           KV  E    +QI L +++T + T++ ++QV+ NLA +A  +PGFRR K      VP+  L
Sbjct: 2   KVTQEKLPASQIGLEIEITPEITKQTYEQVIKNLASTA-NIPGFRRGK------VPRPIL 61

Query: 161 LEVLGKDRVTKFVIQEILNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFN 220
           L+ LG  R+    ++E++   +    K+E I    +      + ++L   + PGK     
Sbjct: 62  LQRLGTTRIKAAALEELIQDGIEQAVKQEAIPAIGQP-QLRSSFEDLINNYEPGKPLTIL 119

Query: 221 AILELE 227
           A +++E
Sbjct: 122 AAVDVE 119

[Close]

BLAST of ClCG06G001080 vs. ExPASy TrEMBL
Match: A0A0A0K988 (Trigger_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G086160 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.4e-112
Identity = 211/233 (90.56%), Postives = 224/233 (96.14%), Query Frame = 0


Query: 1   MVSATATATATVTDIASEFRRPIFTKVPVKGYCRNALVCLNFGGVEFDNVQDGLCRRSSF 60
           M+SATATATATVT+IASEF RPIFTKVPVKGYC NALVCLNFGGVEFDNV+DGLCRRSSF
Sbjct: 1   MMSATATATATVTNIASEFPRPIFTKVPVKGYCHNALVCLNFGGVEFDNVRDGLCRRSSF 60

Query: 61  SYSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTG 120
           SYS HK+GSRFLSKPTS+ASSG EAAITDYKGN ITLKNAKVVVESE+EN+IQLRVDLTG
Sbjct: 61  SYSFHKIGSRFLSKPTSIASSGLEAAITDYKGNPITLKNAKVVVESEEENKIQLRVDLTG 120

Query: 121 DETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNS 180
           DETQKVFDQVL NLARSAPPMPGFR+QKGGKTSNVPKSFLLEVLGKDRVTKF+IQEILNS
Sbjct: 121 DETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFIIQEILNS 180

Query: 181 TMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN 234
           TM DYAKKENINVKDKKV+TTQTADELKVLF+PGK+FGFNAILELES SD E+
Sbjct: 181 TMVDYAKKENINVKDKKVSTTQTADELKVLFNPGKEFGFNAILELESASDAES 233

[Close]

BLAST of ClCG06G001080 vs. ExPASy TrEMBL
Match: A0A1S3CBN2 (uncharacterized protein LOC103498959 OS=Cucumis melo OX=3656 GN=LOC103498959 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.1e-111
Identity = 212/234 (90.60%), Postives = 224/234 (95.73%), Query Frame = 0


Query: 1   MVSATATATATVTDIA-SEFRRPIFTKVPVKGYCRNALVCLNFGGVEFDNVQDGLCRRSS 60
           M+SATATATATVT+IA SEF RPIFTKV VKGYC NALVCLNFGGVEFDNVQDGLCRRSS
Sbjct: 1   MMSATATATATVTNIASSEFPRPIFTKVSVKGYCHNALVCLNFGGVEFDNVQDGLCRRSS 60

Query: 61  FSYSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLT 120
           FSYS H++GSRFLSKPTS+ASSG EAA+TDYKGNAITLKNAKVVVESE+EN+IQLRVDLT
Sbjct: 61  FSYSSHRIGSRFLSKPTSIASSGLEAALTDYKGNAITLKNAKVVVESEEENKIQLRVDLT 120

Query: 121 GDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILN 180
           GDETQKVFDQVL NLARSAPPMPGFR+QKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILN
Sbjct: 121 GDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILN 180

Query: 181 STMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN 234
           STMADYAKKENINVKD KVNTTQTADELKVLF+PGK+FGFNAILELES SD E+
Sbjct: 181 STMADYAKKENINVKDNKVNTTQTADELKVLFNPGKEFGFNAILELESASDAES 234

[Close]

BLAST of ClCG06G001080 vs. ExPASy TrEMBL
Match: A0A6J1DRL2 (uncharacterized protein LOC111022553 OS=Momordica charantia OX=3673 GN=LOC111022553 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 9.7e-103
Identity = 191/224 (85.27%), Postives = 210/224 (93.75%), Query Frame = 0


Query: 6   ATATATVTDIASEFRRPIFTKVPVKGYCRNALVCLNFGGVEFDNVQDGLCRRSSFSYSPH 65
           A+ATATVT++ASE+RR  F KVPVKGYCR+ L C N GGVEFDNVQ+GLCRRSSFS SPH
Sbjct: 2   ASATATVTNLASEYRRASFIKVPVKGYCRSVLACSNSGGVEFDNVQNGLCRRSSFSCSPH 61

Query: 66  KMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQK 125
           K+GSRFLS+PTS+ASSG EAAITDYKGNAI LKNAK+VVESEDEN IQLRVDL+GDETQK
Sbjct: 62  KLGSRFLSRPTSIASSGLEAAITDYKGNAIALKNAKIVVESEDENLIQLRVDLSGDETQK 121

Query: 126 VFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADY 185
           +FDQVL NLARSAPPMPGFR QKGGKTSNVPKSFLLEVLG++RVTKFVIQEILNSTMADY
Sbjct: 122 IFDQVLTNLARSAPPMPGFRMQKGGKTSNVPKSFLLEVLGEERVTKFVIQEILNSTMADY 181

Query: 186 AKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGS 230
           AKKEN+NVKDKKVNTTQTADELK+LF+PGK+FGFNAILELES +
Sbjct: 182 AKKENVNVKDKKVNTTQTADELKLLFTPGKEFGFNAILELESAN 225

[Close]

BLAST of ClCG06G001080 vs. ExPASy TrEMBL
Match: A0A6J1KVH6 (uncharacterized protein LOC111497577 OS=Cucurbita maxima OX=3661 GN=LOC111497577 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.9e-100
Identity = 198/239 (82.85%), Postives = 213/239 (89.12%), Query Frame = 0


Query: 1   MVSATATATATVTDIASEFRRPIFTKVPVKGYCRNALVCLNFGGVEFDNVQDGLCRRSSF 60
           M SATATATATV +IASEFRRP+FTKVPV G  RNAL+C+NFGGVEF+NVQD LC RSS 
Sbjct: 1   MASATATATATVANIASEFRRPVFTKVPVNGRRRNALICMNFGGVEFENVQDRLCTRSSV 60

Query: 61  SYSPHKMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTG 120
           SYS   +GSRFLS+PT++ASSG EAAITDYKG AITLKNAK+VVESEDEN+IQLRV+LTG
Sbjct: 61  SYSLLVVGSRFLSRPTAIASSGLEAAITDYKG-AITLKNAKIVVESEDENKIQLRVNLTG 120

Query: 121 DETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNS 180
           DETQKVFDQVL NLARSAPPMPGFR+QKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNS
Sbjct: 121 DETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNS 180

Query: 181 TMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELE------SGSDGEN 234
           TMADYAKKENI VKDK VNTTQT DELKVLF PGK+FGFNAILELE      S S+ EN
Sbjct: 181 TMADYAKKENIKVKDKMVNTTQTEDELKVLFRPGKEFGFNAILELELEPELDSASEDEN 238

[Close]

BLAST of ClCG06G001080 vs. ExPASy TrEMBL
Match: A0A6J1H8V8 (uncharacterized protein LOC111461115 OS=Cucurbita moschata OX=3662 GN=LOC111461115 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.5e-98
Identity = 195/236 (82.63%), Postives = 208/236 (88.14%), Query Frame = 0


Query: 6   ATATATVTDIASEFRRPIFTKVPVKGYCRNALVCLNFGGVEFDNVQDGLCRRSSFSYSPH 65
           A+ATATV +IASEFRRP+FTKVPV G  RNALVCLNFGGVEF+NVQD LC RSS SYSP 
Sbjct: 2   ASATATVANIASEFRRPVFTKVPVNGRRRNALVCLNFGGVEFENVQDRLCTRSSVSYSPL 61

Query: 66  KMGSRFLSKPTSVASSGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQK 125
            +GSRFLS+PT++ASSG EAAITDYKG AITLKNAK+VVESEDEN+IQLRVDLTGDETQK
Sbjct: 62  VVGSRFLSRPTAIASSGLEAAITDYKG-AITLKNAKIVVESEDENKIQLRVDLTGDETQK 121

Query: 126 VFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADY 185
           VFDQVL NLARSAP MPGFR+QKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTM DY
Sbjct: 122 VFDQVLTNLARSAPLMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMVDY 181

Query: 186 AKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAIL--------ELESGSDGEN 234
           AKKENI VKDK VNTTQT DELK LF PGK+FGFNAIL        ELES S+GEN
Sbjct: 182 AKKENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELELELEPELESASEGEN 236

[Close]

BLAST of ClCG06G001080 vs. TAIR 10
Match: AT2G30695.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 253 Blast hits to 253 proteins in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). )

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-25
Identity = 53/126 (42.06%), Postives = 88/126 (69.84%), Query Frame = 0


Query: 104 VESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEV 163
           VE+E  N++++ V ++G++TQ VF+ V   +  +A P+PGFRR KGGKT N+PK  LLE+
Sbjct: 75  VETETSNEVKVHVQVSGEKTQTVFNHVFEKMVAAAQPIPGFRRVKGGKTPNIPKDVLLEI 134

Query: 164 LGKDRVTKFVIQEILNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAIL 223
           LG  +V K VI++++NS + DY K+E++ V  K++   Q+ ++L+  F PG+ F F+A +
Sbjct: 135 LGYSKVYKQVIKKLINSAIEDYVKQEDLKV-GKELTVVQSYEDLEETFEPGESFSFDATI 194

Query: 224 ELESGS 230
           +L+  S
Sbjct: 195 KLQEAS 199

[Close]

BLAST of ClCG06G001080 vs. TAIR 10
Match: AT2G30695.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-25
Identity = 53/126 (42.06%), Postives = 88/126 (69.84%), Query Frame = 0


Query: 104 VESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPMPGFRRQKGGKTSNVPKSFLLEV 163
           VE+E  N++++ V ++G++TQ VF+ V   +  +A P+PGFRR KGGKT N+PK  LLE+
Sbjct: 75  VETETSNEVKVHVQVSGEKTQTVFNHVFEKMVAAAQPIPGFRRVKGGKTPNIPKDVLLEI 134

Query: 164 LGKDRVTKFVIQEILNSTMADYAKKENINVKDKKVNTTQTADELKVLFSPGKDFGFNAIL 223
           LG  +V K VI++++NS + DY K+E++ V  K++   Q+ ++L+  F PG+ F F+A +
Sbjct: 135 LGYSKVYKQVIKKLINSAIEDYVKQEDLKV-GKELTVVQSYEDLEETFEPGESFSFDATI 194

Query: 224 ELESGS 230
           +L+  S
Sbjct: 195 KLQEAS 199

The following BLAST results are available for this feature:

BLAST of ClCG06G001080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906537.1	2.1e-112	92.58	uncharacterized protein LOC120092511 [Benincasa hispida]	[more]
XP_011656737.1	2.8e-112	90.56	uncharacterized protein LOC101212225 [Cucumis sativus] >KGN46335.1 hypothetical ...	[more]
XP_008460020.1	2.4e-111	90.60	PREDICTED: uncharacterized protein LOC103498959 [Cucumis melo]	[more]
XP_022155406.1	2.0e-102	85.27	uncharacterized protein LOC111022553 [Momordica charantia]	[more]
XP_023004174.1	1.2e-99	82.85	uncharacterized protein LOC111497577 [Cucurbita maxima]	[more]

BLAST of ClCG06G001080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8YQX9	6.7e-08	30.95	Trigger factor OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690...	[more]
Q3M725	6.7e-08	30.95	Trigger factor OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292...	[more]
B1XL18	1.9e-07	28.00	Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=320...	[more]
B2IT89	1.1e-05	29.37	Trigger factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN...	[more]

BLAST of ClCG06G001080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K988	1.4e-112	90.56	Trigger_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G086160 P...	[more]
A0A1S3CBN2	1.1e-111	90.60	uncharacterized protein LOC103498959 OS=Cucumis melo OX=3656 GN=LOC103498959 PE=...	[more]
A0A6J1DRL2	9.7e-103	85.27	uncharacterized protein LOC111022553 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1KVH6	5.9e-100	82.85	uncharacterized protein LOC111497577 OS=Cucurbita maxima OX=3661 GN=LOC111497577...	[more]
A0A6J1H8V8	2.5e-98	82.63	uncharacterized protein LOC111461115 OS=Cucurbita moschata OX=3662 GN=LOC1114611...	[more]

BLAST of ClCG06G001080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30695.1	1.6e-25	42.06	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein ...	[more]
AT2G30695.2	1.6e-25	42.06	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein ...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036611	Trigger factor ribosome-binding domain superfamily	GENE3D	3.30.70.1050		coord: 101..226 e-value: 8.1E-21 score: 76.3
IPR036611	Trigger factor ribosome-binding domain superfamily	SUPERFAMILY	102735	Trigger factor ribosome-binding domain	coord: 101..225
IPR008881	Trigger factor, ribosome-binding, bacterial	PFAM	PF05697	Trigger_N	coord: 101..225 e-value: 1.3E-11 score: 44.9
None	No IPR available	PANTHER	PTHR30560:SF4	OS01G0894700 PROTEIN	coord: 12..229
IPR005215	Trigger factor	PANTHER	PTHR30560	TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE	coord: 12..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G001080.2	ClCG06G001080.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061077	chaperone-mediated protein folding
biological_process	GO:0051083	'de novo' cotranslational protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0015031	protein transport
biological_process	GO:0043335	protein unfolding
biological_process	GO:0006457	protein folding
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0044183	protein folding chaperone
molecular_function	GO:0043022	ribosome binding