ClCG06G000860 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G000860
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	10 kDa chaperonin-like
Location	CG_Chr06: 834932 .. 838253 (-)
RNA-Seq Expression	ClCG06G000860
Synteny	ClCG06G000860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAATTGATACCTCTATCCGCTGAGTTTAGGGTTTAGAAGTTGATAGAACATTCTAGACTTCATAATCTATTTTATCATTACACAAGCTCAACCCATCTCTTCCACTTGGACGGTTTAGCAATATTTCCATTTCCGTTGGCTCTGCAGCATATTCCAAAGCTCTTGCCTTCGCCGTTTAGCTCACTACCTTATCCATGGCGTCTATGTTCTTGACTGTGAAGCCCTTTGTAAACAAAATTGACGCACACACTTTCTCCAATCAGAGAATACAGAGTAATTTCTTTTCTTCTTCCCTCAGCTCTACTCCAATCTCAGTTTTCTTCTTTCTTTCGTCGTTGATTTTGTTCGCATTGGTTCTGGACAGGCACTCGGAGAACTTCCCTTAAAGTCTGTGCAGTGTCGAAGAAATTGGAACCCACCAAGGTCTGTAACTGTTTCCGCCTTTTGTGGGGTTTCTATTGAGTTCTGCAGATTTTGGCTTCGTTTTTTGATTCATTGTCTGTTTTGAGTTGATGGGGTTAGAGATTTTGGGTTGTGAGTTTATGATTAATGGTTTAGCTTTTGTTCTTTGTGAAATGCAGGTTGTTCCACAAGGGGATAGAGTCCTCATTCGGCTCGAGGAGCTTCCTGAGGTGTGAATTTTTAACATTCATGAATTCCATGTTCTTCAATCATTTTGCTTTTGTATTCTTATGTGATATCTTGTTCAAGTTCTTATCAAGCTTATCTAAATTTGGAATTTTTCTTTAGTTTCCACCATATCCTTCGTAGTATCGTAACTTAAACAACCATGAGTAGTTGCATTGAGACTTGTGAGAAAAAAAGGTAAAGGGAATTTGGGGAATGGGTTCTCACGCTACAATTGTAGGTCACCTACTTAAGGTAATAAAGTTCTGCAAGGCTTTTTTTTTTTTATTTTATTTTTTTTATTTTTATTTTTACGAAGCAATATCATAATGCTGGTCTCGACATTCATGAATATCAAAAGATGCACTTAAACTTTTGATCTTTAAATAACTTTGTAACATTGATGACTTGTAAGGATCCGTTTGATAATCATCTGGGTTTTATTTTTAGTACTTGAAAATTGTGTTTGTTTTTCACAATTCCTTAGCAATGGGTTTCATCTCTCCTATAGAAACATTTGAATTATGTTTCAAGGAAAAAAGGAAAAAAAAAAACACTTGAATTCGTATCAAAGTTCCAAAAAACAAAAATATGTTTTTATAAACTATGTTTTTTTAGTTTTCAAAACCTGGTTTGGTTTTTAAAACACCCCTAAAATGTAGACAACAGACCAAGAAACTCATACGTCGAAGTAGTGTTTATAAGCTTTATTTTCGAAAACCAAAAACCAAATGATAATTAAATGAGGCCTAAGTCTTTTAACATGAACTTACATGGTTATTTGTATGGTTGAATAGTAGCTTAATTTGATTTTGTGTATCCTCTTCATTGGCATTTCCTATTGCGAAGGAACTACACATCTAGATAGTTCAATGTGTCAACAAAATTGTATTATATTCTATTAGAAATTACTGATTGAGGGAGTTAACCATGAGCACATGTTGGGAACTCTACTTTTGTGATGGCAAATAAGAAAGTTCCTTCTCAAATTTCATTACTGACGTAGTAAAATAATTTATTCAACTCCATAAATGAATTTCTTGGCTGTGGGAGGGTATCCACTGCAGAAAGAATCTTCTCTGATACTCGTATAATTTTGTATTCATGCCTAAGTTAGTAGTTGTACCATGTTGAGGCTTTGAGAAATGGGGGTTACTACAGTTAAGGCACTGCTTTTTGGGGATAGAAATTTGGAAACAAGAGCACAATTTGGAGATACCTGCTAAATATGTTTTAGAGGCTTTAGAACTTCGTCGAGATACTTGTGTAGCATGCTTTTCGTGGATACCAATTAAGTTCGACCTAAGAATATAATATGTTGGAAGGACAATAGTGCTAATCGTTCTGAACTCTTATGTTCTGAAATATGTTGCTTCATCAGCATGTGGCATGTAGTCTGGGATTGATTCTTCAATCATTTTATGCCACAGAAATCAGCAGGAGGAGTTCTACTTCCCAAGTCAGCCGTTAAATTCGAGCGTTATCTGTTAGGAGAGGTAAGCAAAACTCCTTCCTTTTTCTTATCTTCTAGGATGGGGAATGGAACGAAGCTTCTCTCTTTCTTCATGTTTCTTTACTCCTGCTACTGCTGAGTTTGCATTTCTTTTCAGATCCTCTCTACAGGTGCTGATGCCGGTGAACTGGGGCAAGGAAAGAAGGTTAGGATTAACTTTTGGTTAGCCTGTTGATTTTCTTATTGAATGCTGCAATATGTTTCCAATGAATCTGAACTTTTCTCGGAAAAAAAGAAATGTTTGCTTGTGCCTTCTTTGAAGAAGAGAATTTTTCTTGTGTTACAGGTTCTTTTCTCGGACATTAGTGCTTATGAGGTAAGCCACCTTAGTTTGAAGATTACTTGTTCATTTCAGCAGTTATACTTCAGAATTTGCATAGTAGTTCATCATTTTCCATTTGAAACTGGTAGTTACCATAGCTTGTTCAGTTTTAATAGTACATAGACCAAATTGAAACTTCACAGAAACAAGAAATTGACATAAACATTGGTCAGTGAAAAGAACTCATTATGCCTATTGGGTTTAAAATAGAGAAACACACTTATATTAGACTCAACCCAAATACACGCCACCAGGCTGGATCAGCCGGACGCGGCTTAAAACAATCAACTCCCCTCCCCTTCAGGGTTAACTACCACTAAAGTTCCTAGAGGAGAGGACCTTGAGCAGTTTTCGGGTTTGGAGCAGAGATTCCCTTTAGATCTAAGGTTCAAACTCAAACGTCATACATCAGGAGAAACTATATACCATTGGACGACAATGTTTCAAAACCAGTGACCACATTGAACTAATTTTCTTACATTAGTTAAGGTGGACAGATTTTTAGAATATGGCTGCTTTTCTGTATACAAGGTGAAGTATAAACTATTGATTTTATTTTAACAATTGCATGTAATATGTCACAGGTGGATTTAGGCACAGATGCAAAACATGTCTTCTGCAAAGCAAGTGATTTACTGGCTGTAGTTGAGTAAGTTTCAGCAAGGGAAAAAAAAAAAAGCCACAACTCTGGTTGTATTAGGTTCCTTCTTTTTTGTAAGGCAGAGGGATTTTTCATTGTTGTAGCTACAAATGTAGTTGAATATGTTATATTGAAGTCTCTGACTCAGTTCTTTGGATTAATATTTCACTCTGTGCCATTTCTGCTACGCTCTCTTCTCCAACATTCTTGAGAACTCGG

mRNA sequence

GTAATTGATACCTCTATCCGCTGAGTTTAGGGTTTAGAAGTTGATAGAACATTCTAGACTTCATAATCTATTTTATCATTACACAAGCTCAACCCATCTCTTCCACTTGGACGGTTTAGCAATATTTCCATTTCCGTTGGCTCTGCAGCATATTCCAAAGCTCTTGCCTTCGCCGTTTAGCTCACTACCTTATCCATGGCGTCTATGTTCTTGACTGTGAAGCCCTTTGTAAACAAAATTGACGCACACACTTTCTCCAATCAGAGAATACAGAGCACTCGGAGAACTTCCCTTAAAGTCTGTGCAGTGTCGAAGAAATTGGAACCCACCAAGGTTGTTCCACAAGGGGATAGAGTCCTCATTCGGCTCGAGGAGCTTCCTGAGAAATCAGCAGGAGGAGTTCTACTTCCCAAGTCAGCCGTTAAATTCGAGCGTTATCTGTTAGGAGAGATCCTCTCTACAGGTGCTGATGCCGGTGAACTGGGGCAAGGAAAGAAGGTTCTTTTCTCGGACATTAGTGCTTATGAGGTGGATTTAGGCACAGATGCAAAACATGTCTTCTGCAAAGCAAGTGATTTACTGGCTGTAGTTGAGTAAGTTTCAGCAAGGGAAAAAAAAAAAAGCCACAACTCTGGTTGTATTAGGTTCCTTCTTTTTTGTAAGGCAGAGGGATTTTTCATTGTTGTAGCTACAAATGTAGTTGAATATGTTATATTGAAGTCTCTGACTCAGTTCTTTGGATTAATATTTCACTCTGTGCCATTTCTGCTACGCTCTCTTCTCCAACATTCTTGAGAACTCGG

Coding sequence (CDS)

ATGGCGTCTATGTTCTTGACTGTGAAGCCCTTTGTAAACAAAATTGACGCACACACTTTCTCCAATCAGAGAATACAGAGCACTCGGAGAACTTCCCTTAAAGTCTGTGCAGTGTCGAAGAAATTGGAACCCACCAAGGTTGTTCCACAAGGGGATAGAGTCCTCATTCGGCTCGAGGAGCTTCCTGAGAAATCAGCAGGAGGAGTTCTACTTCCCAAGTCAGCCGTTAAATTCGAGCGTTATCTGTTAGGAGAGATCCTCTCTACAGGTGCTGATGCCGGTGAACTGGGGCAAGGAAAGAAGGTTCTTTTCTCGGACATTAGTGCTTATGAGGTGGATTTAGGCACAGATGCAAAACATGTCTTCTGCAAAGCAAGTGATTTACTGGCTGTAGTTGAGTAA

Protein sequence

MASMFLTVKPFVNKIDAHTFSNQRIQSTRRTSLKVCAVSKKLEPTKVVPQGDRVLIRLEELPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKHVFCKASDLLAVVE

Homology

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BLAST of ClCG06G000860 vs. NCBI nr
Match: XP_022958987.1 (10 kDa chaperonin 1, chloroplastic-like [Cucurbita moschata] >XP_022958988.1 10 kDa chaperonin 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 248.1 bits (632), Expect = 4.4e-62
Identity = 128/133 (96.24%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MASMFLTVKPFVNKIDAHTFSNQRIQSTRRTSLKVCAVSKKLEPTKVVPQGDRVLIRLEE 60
           MASMFLTVKPFVNKID  T SN+RIQSTRRTSLKVCAVSKKLEP KVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVKPFVNKIDVSTLSNRRIQSTRRTSLKVCAVSKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH 120
           LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH 120

Query: 121 VFCKASDLLAVVE 134
           VFCKASDLLAVVE
Sbjct: 121 VFCKASDLLAVVE 133

[Close]

BLAST of ClCG06G000860 vs. NCBI nr
Match: XP_038906447.1 (10 kDa chaperonin 1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 247.7 bits (631), Expect = 5.7e-62
Identity = 127/133 (95.49%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 1   MASMFLTVKPFVNKIDAHTFSNQRIQSTRRTSLKVCAVSKKLEPTKVVPQGDRVLIRLEE 60
           MASMFLTVKPFVNKIDA TFSNQR+ STRRTSLKVCAV+KKLEPTKVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVKPFVNKIDAPTFSNQRLHSTRRTSLKVCAVAKKLEPTKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH 120
           LPEKSAGGVLLPKSAVKFERYLLGEILS GADAGELG+GKKVLFSDISAYEVDLGTDAKH
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSAGADAGELGKGKKVLFSDISAYEVDLGTDAKH 120

Query: 121 VFCKASDLLAVVE 134
           VFCKASDLLAVVE
Sbjct: 121 VFCKASDLLAVVE 133

[Close]

BLAST of ClCG06G000860 vs. NCBI nr
Match: XP_023006781.1 (10 kDa chaperonin 1, chloroplastic-like [Cucurbita maxima] >XP_023006782.1 10 kDa chaperonin 1, chloroplastic-like [Cucurbita maxima] >XP_023549322.1 10 kDa chaperonin 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.7 bits (631), Expect = 5.7e-62
Identity = 128/133 (96.24%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MASMFLTVKPFVNKIDAHTFSNQRIQSTRRTSLKVCAVSKKLEPTKVVPQGDRVLIRLEE 60
           MASMFLTVKPFVNKID  T SN+RIQSTRRTSLKVCAVSKKLEP KVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVKPFVNKIDVPTLSNRRIQSTRRTSLKVCAVSKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH 120
           LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH 120

Query: 121 VFCKASDLLAVVE 134
           VFCKASDLLAVVE
Sbjct: 121 VFCKASDLLAVVE 133

[Close]

BLAST of ClCG06G000860 vs. NCBI nr
Match: XP_023513476.1 (10 kDa chaperonin 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.2 bits (622), Expect = 6.4e-61
Identity = 127/133 (95.49%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MASMFLTVKPFVNKIDAHTFSNQRIQSTRRTSLKVCAVSKKLEPTKVVPQGDRVLIRLEE 60
           MASMFLTVKPFVNKID+ TF NQRIQSTRRTSL+V AVSKKLEP KVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVKPFVNKIDSRTFLNQRIQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH 120
           LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH 120

Query: 121 VFCKASDLLAVVE 134
           VFCKASDLLAVVE
Sbjct: 121 VFCKASDLLAVVE 133

[Close]

BLAST of ClCG06G000860 vs. NCBI nr
Match: KAG6574824.1 (10 kDa chaperonin 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013401.1 10 kDa chaperonin 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.4 bits (620), Expect = 1.1e-60
Identity = 126/133 (94.74%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 1   MASMFLTVKPFVNKIDAHTFSNQRIQSTRRTSLKVCAVSKKLEPTKVVPQGDRVLIRLEE 60
           MASMFLTVKP+VNKID  T SN+RIQSTRRTSLKVCAVSKKLE  KVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVKPYVNKIDVPTLSNRRIQSTRRTSLKVCAVSKKLESAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH 120
           LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH 120

Query: 121 VFCKASDLLAVVE 134
           VFCKASDLLAVVE
Sbjct: 121 VFCKASDLLAVVE 133

[Close]

BLAST of ClCG06G000860 vs. ExPASy Swiss-Prot
Match: Q9M1C2 (10 kDa chaperonin 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-1 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.3e-40
Identity = 90/138 (65.22%), Postives = 107/138 (77.54%), Query Frame = 0


Query: 1   MASMFLTV-KPFVN---KIDAHTFSNQRIQSTRRTSLKVCAVSKKLEPTKVVPQGDRVLI 60
           MAS F+TV KPF++   K +A T   Q +   RR S ++ AVS K EP KVVPQ DRVL+
Sbjct: 1   MASSFITVPKPFLSFPIKTNAPTLPQQTLLGIRRNSFRINAVSTKWEPAKVVPQADRVLV 60

Query: 61  RLEELPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGT 120
           RLE LPEKS+GGVLLPKSAVKFERYL GE++S G++ GE+  GKKVLFSD+SAYEVD GT
Sbjct: 61  RLEVLPEKSSGGVLLPKSAVKFERYLTGEVVSVGSEVGEVEPGKKVLFSDMSAYEVDFGT 120

Query: 121 -DAKHVFCKASDLLAVVE 134
            DAKH FCK SDLLA+V+
Sbjct: 121 EDAKHCFCKESDLLAIVQ 138

[Close]

BLAST of ClCG06G000860 vs. ExPASy Swiss-Prot
Match: O80504 (10 kDa chaperonin 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-2 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.6e-38
Identity = 84/139 (60.43%), Postives = 105/139 (75.54%), Query Frame = 0


Query: 1   MASMFLTVKP-----FVNKIDAHTFSNQRIQSTRRTSLKVCAVSKKLEPTKVVPQGDRVL 60
           MAS F+   P     F  K    + +N  +  +RR  L++ A+S K EPTKVVPQ DRVL
Sbjct: 1   MASTFVCSLPNPFFAFPVKATTPSTANHTLLGSRRGCLRIKAISTKWEPTKVVPQADRVL 60

Query: 61  IRLEELPEKSAGGVLLPKSAVKFERYLLGEILSTGADAG-ELGQGKKVLFSDISAYEVDL 120
           +RLE+LP KS+GGVLLPK+AVKFERYL GEI+S G++ G ++G GK+VLFSD+SAYEVDL
Sbjct: 61  VRLEDLPIKSSGGVLLPKAAVKFERYLTGEIISVGSEVGQQVGPGKRVLFSDVSAYEVDL 120

Query: 121 GTDAKHVFCKASDLLAVVE 134
           GTDA+H FCK SDLLA+VE
Sbjct: 121 GTDARHCFCKESDLLALVE 139

[Close]

BLAST of ClCG06G000860 vs. ExPASy Swiss-Prot
Match: A5GNB0 (10 kDa chaperonin OS=Synechococcus sp. (strain WH7803) OX=32051 GN=groS PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.7e-09
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 42  LEPTKVVPQGDRVLIRLEELPEKSAGGVLLPKSAVKFERYLLGEILSTG---------AD 101
           L  + V P GDRV +++ E  EK+AGG+LLP +A   E+  +GE++  G           
Sbjct: 6   LSVSTVKPLGDRVFVKVSESEEKTAGGILLPDTAK--EKPQVGEVVQVGPGKANEDGSRQ 65

Query: 102 AGELGQGKKVLFSDISAYEVDLGTDAKHVFCKASDLLAVV 133
           A E+G G KVL+S  +  ++ LG+D ++V     D+LAVV
Sbjct: 66  APEVGVGDKVLYSKYAGTDIKLGSD-EYVLLSEKDILAVV 102

[Close]

BLAST of ClCG06G000860 vs. ExPASy Swiss-Prot
Match: Q0I7U2 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9311) OX=64471 GN=groS PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.7e-09
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 42  LEPTKVVPQGDRVLIRLEELPEKSAGGVLLPKSAVKFERYLLGEILSTG---------AD 101
           L  + V P GDRV +++ E  EK+AGG+LLP +A   E+  +GE++  G           
Sbjct: 6   LSVSTVKPLGDRVFVKISESEEKTAGGILLPDTAK--EKPQVGEVVQVGPGKSNDDGSRQ 65

Query: 102 AGELGQGKKVLFSDISAYEVDLGTDAKHVFCKASDLLAVV 133
           A E+G G KVL+S  +  ++ LG+D ++V     D+LAVV
Sbjct: 66  APEVGIGDKVLYSKYAGTDIKLGSD-EYVLLSEKDILAVV 102

[Close]

BLAST of ClCG06G000860 vs. ExPASy Swiss-Prot
Match: Q7TV92 (10 kDa chaperonin OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) OX=167539 GN=groS PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-08
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 42  LEPTKVVPQGDRVLIRLEELPEKSAGGVLLPKSAVKFERYLLGEILSTG---------AD 101
           L  + V P GDRV I++ E  EK+AGG+LLP +A   E+  +GE+   G           
Sbjct: 6   LSVSTVKPLGDRVFIKVSESEEKTAGGILLPDTAK--EKPQVGEVAQVGPGKRNDDGSRQ 65

Query: 102 AGELGQGKKVLFSDISAYEVDLGTDAKHVFCKASDLLAVV 133
           A E+G G KVL+S  +  ++ LG+D ++V     D+LAVV
Sbjct: 66  APEVGVGDKVLYSKYAGTDIKLGSD-EYVLLSEKDILAVV 102

[Close]

BLAST of ClCG06G000860 vs. ExPASy TrEMBL
Match: A0A6J1H3B8 (10 kDa chaperonin 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460114 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.1e-62
Identity = 128/133 (96.24%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MASMFLTVKPFVNKIDAHTFSNQRIQSTRRTSLKVCAVSKKLEPTKVVPQGDRVLIRLEE 60
           MASMFLTVKPFVNKID  T SN+RIQSTRRTSLKVCAVSKKLEP KVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVKPFVNKIDVSTLSNRRIQSTRRTSLKVCAVSKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH 120
           LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH 120

Query: 121 VFCKASDLLAVVE 134
           VFCKASDLLAVVE
Sbjct: 121 VFCKASDLLAVVE 133

[Close]

BLAST of ClCG06G000860 vs. ExPASy TrEMBL
Match: A0A6J1KWR7 (10 kDa chaperonin 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111499414 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.8e-62
Identity = 128/133 (96.24%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MASMFLTVKPFVNKIDAHTFSNQRIQSTRRTSLKVCAVSKKLEPTKVVPQGDRVLIRLEE 60
           MASMFLTVKPFVNKID  T SN+RIQSTRRTSLKVCAVSKKLEP KVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVKPFVNKIDVPTLSNRRIQSTRRTSLKVCAVSKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH 120
           LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH 120

Query: 121 VFCKASDLLAVVE 134
           VFCKASDLLAVVE
Sbjct: 121 VFCKASDLLAVVE 133

[Close]

BLAST of ClCG06G000860 vs. ExPASy TrEMBL
Match: A0A5D3DLT2 (Chloroplast chaperonin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00930 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.4e-60
Identity = 123/133 (92.48%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MASMFLTVKPFVNKIDAHTFSNQRIQSTRRTSLKVCAVSKKLEPTKVVPQGDRVLIRLEE 60
           MASMFLTVKPFVNK +  TFSNQR+ STRR SLKVCAV KKLEP KVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVKPFVNKFETPTFSNQRLHSTRRISLKVCAVGKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH 120
           LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAG+LGQGKKVLFSDISAYEVDLGTDAKH
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGDLGQGKKVLFSDISAYEVDLGTDAKH 120

Query: 121 VFCKASDLLAVVE 134
           VFCKASDLLAVVE
Sbjct: 121 VFCKASDLLAVVE 133

[Close]

BLAST of ClCG06G000860 vs. ExPASy TrEMBL
Match: A0A0A0KET7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G080390 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.4e-60
Identity = 123/133 (92.48%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MASMFLTVKPFVNKIDAHTFSNQRIQSTRRTSLKVCAVSKKLEPTKVVPQGDRVLIRLEE 60
           MASMFLTVKPFVNK +  TFSNQR+ STRR SLKVCAV KKLEP KVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVKPFVNKFETPTFSNQRLHSTRRISLKVCAVGKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH 120
           LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAG+LGQGKKVLFSDISAYEVDLGTDAKH
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGDLGQGKKVLFSDISAYEVDLGTDAKH 120

Query: 121 VFCKASDLLAVVE 134
           VFCKASDLLAVVE
Sbjct: 121 VFCKASDLLAVVE 133

[Close]

BLAST of ClCG06G000860 vs. ExPASy TrEMBL
Match: A0A1S4E2Q1 (10 kDa chaperonin-like OS=Cucumis melo OX=3656 GN=LOC107991695 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.4e-60
Identity = 123/133 (92.48%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MASMFLTVKPFVNKIDAHTFSNQRIQSTRRTSLKVCAVSKKLEPTKVVPQGDRVLIRLEE 60
           MASMFLTVKPFVNK +  TFSNQR+ STRR SLKVCAV KKLEP KVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVKPFVNKFETPTFSNQRLHSTRRISLKVCAVGKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGTDAKH 120
           LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAG+LGQGKKVLFSDISAYEVDLGTDAKH
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGDLGQGKKVLFSDISAYEVDLGTDAKH 120

Query: 121 VFCKASDLLAVVE 134
           VFCKASDLLAVVE
Sbjct: 121 VFCKASDLLAVVE 133

[Close]

BLAST of ClCG06G000860 vs. TAIR 10
Match: AT3G60210.1 (GroES-like family protein )

HSP 1 Score: 167.2 bits (422), Expect = 9.2e-42
Identity = 90/138 (65.22%), Postives = 107/138 (77.54%), Query Frame = 0


Query: 1   MASMFLTV-KPFVN---KIDAHTFSNQRIQSTRRTSLKVCAVSKKLEPTKVVPQGDRVLI 60
           MAS F+TV KPF++   K +A T   Q +   RR S ++ AVS K EP KVVPQ DRVL+
Sbjct: 1   MASSFITVPKPFLSFPIKTNAPTLPQQTLLGIRRNSFRINAVSTKWEPAKVVPQADRVLV 60

Query: 61  RLEELPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYEVDLGT 120
           RLE LPEKS+GGVLLPKSAVKFERYL GE++S G++ GE+  GKKVLFSD+SAYEVD GT
Sbjct: 61  RLEVLPEKSSGGVLLPKSAVKFERYLTGEVVSVGSEVGEVEPGKKVLFSDMSAYEVDFGT 120

Query: 121 -DAKHVFCKASDLLAVVE 134
            DAKH FCK SDLLA+V+
Sbjct: 121 EDAKHCFCKESDLLAIVQ 138

[Close]

BLAST of ClCG06G000860 vs. TAIR 10
Match: AT2G44650.1 (chloroplast chaperonin 10 )

HSP 1 Score: 158.7 bits (400), Expect = 3.3e-39
Identity = 84/139 (60.43%), Postives = 105/139 (75.54%), Query Frame = 0


Query: 1   MASMFLTVKP-----FVNKIDAHTFSNQRIQSTRRTSLKVCAVSKKLEPTKVVPQGDRVL 60
           MAS F+   P     F  K    + +N  +  +RR  L++ A+S K EPTKVVPQ DRVL
Sbjct: 1   MASTFVCSLPNPFFAFPVKATTPSTANHTLLGSRRGCLRIKAISTKWEPTKVVPQADRVL 60

Query: 61  IRLEELPEKSAGGVLLPKSAVKFERYLLGEILSTGADAG-ELGQGKKVLFSDISAYEVDL 120
           +RLE+LP KS+GGVLLPK+AVKFERYL GEI+S G++ G ++G GK+VLFSD+SAYEVDL
Sbjct: 61  VRLEDLPIKSSGGVLLPKAAVKFERYLTGEIISVGSEVGQQVGPGKRVLFSDVSAYEVDL 120

Query: 121 GTDAKHVFCKASDLLAVVE 134
           GTDA+H FCK SDLLA+VE
Sbjct: 121 GTDARHCFCKESDLLALVE 139

[Close]

BLAST of ClCG06G000860 vs. TAIR 10
Match: AT5G20720.1 (chaperonin 20 )

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-07
Identity = 30/98 (30.61%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 45  TKVVPQGDRVLIRLEELPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQ------ 104
           T + P GDRVL++++E  EK+ GG+LLP +A    +   GE+++ G +   +G+      
Sbjct: 60  TSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQG--GEVVAVG-EGRTIGKNKIDIT 119

Query: 105 ---GKKVLFSDISAYEVDLGTDAKHVFCKASDLLAVVE 134
              G ++++S  +  EV+   D KH+  K  D++ ++E
Sbjct: 120 VPTGAQIIYSKYAGTEVEF-NDVKHLILKEDDIVGILE 153

[Close]

BLAST of ClCG06G000860 vs. TAIR 10
Match: AT5G20720.2 (chaperonin 20 )

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-07
Identity = 30/98 (30.61%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 45  TKVVPQGDRVLIRLEELPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQ------ 104
           T + P GDRVL++++E  EK+ GG+LLP +A    +   GE+++ G +   +G+      
Sbjct: 60  TSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQG--GEVVAVG-EGRTIGKNKIDIT 119

Query: 105 ---GKKVLFSDISAYEVDLGTDAKHVFCKASDLLAVVE 134
              G ++++S  +  EV+   D KH+  K  D++ ++E
Sbjct: 120 VPTGAQIIYSKYAGTEVEF-NDVKHLILKEDDIVGILE 153

[Close]

BLAST of ClCG06G000860 vs. TAIR 10
Match: AT5G20720.3 (chaperonin 20 )

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-07
Identity = 30/98 (30.61%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 45  TKVVPQGDRVLIRLEELPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQ------ 104
           T + P GDRVL++++E  EK+ GG+LLP +A    +   GE+++ G +   +G+      
Sbjct: 60  TSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQG--GEVVAVG-EGRTIGKNKIDIT 119

Query: 105 ---GKKVLFSDISAYEVDLGTDAKHVFCKASDLLAVVE 134
              G ++++S  +  EV+   D KH+  K  D++ ++E
Sbjct: 120 VPTGAQIIYSKYAGTEVEF-NDVKHLILKEDDIVGILE 153

The following BLAST results are available for this feature:

BLAST of ClCG06G000860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958987.1	4.4e-62	96.24	10 kDa chaperonin 1, chloroplastic-like [Cucurbita moschata] >XP_022958988.1 10 ...	[more]
XP_038906447.1	5.7e-62	95.49	10 kDa chaperonin 1, chloroplastic-like [Benincasa hispida]	[more]
XP_023006781.1	5.7e-62	96.24	10 kDa chaperonin 1, chloroplastic-like [Cucurbita maxima] >XP_023006782.1 10 kD...	[more]
XP_023513476.1	6.4e-61	95.49	10 kDa chaperonin 1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG6574824.1	1.1e-60	94.74	10 kDa chaperonin 1, chloroplastic, partial [Cucurbita argyrosperma subsp. soror...	[more]

BLAST of ClCG06G000860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1C2	1.3e-40	65.22	10 kDa chaperonin 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-1 PE...	[more]
O80504	4.6e-38	60.43	10 kDa chaperonin 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-2 PE...	[more]
A5GNB0	7.7e-09	38.00	10 kDa chaperonin OS=Synechococcus sp. (strain WH7803) OX=32051 GN=groS PE=3 SV=...	[more]
Q0I7U2	7.7e-09	38.00	10 kDa chaperonin OS=Synechococcus sp. (strain CC9311) OX=64471 GN=groS PE=3 SV=...	[more]
Q7TV92	1.0e-08	39.00	10 kDa chaperonin OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) OX...	[more]

BLAST of ClCG06G000860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H3B8	2.1e-62	96.24	10 kDa chaperonin 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KWR7	2.8e-62	96.24	10 kDa chaperonin 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111499...	[more]
A0A5D3DLT2	3.4e-60	92.48	Chloroplast chaperonin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A0A0KET7	3.4e-60	92.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G080390 PE=4 SV=1	[more]
A0A1S4E2Q1	3.4e-60	92.48	10 kDa chaperonin-like OS=Cucumis melo OX=3656 GN=LOC107991695 PE=4 SV=1	[more]

BLAST of ClCG06G000860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60210.1	9.2e-42	65.22	GroES-like family protein	[more]
AT2G44650.1	3.3e-39	60.43	chloroplast chaperonin 10	[more]
AT5G20720.1	1.9e-07	30.61	chaperonin 20	[more]
AT5G20720.2	1.9e-07	30.61	chaperonin 20	[more]
AT5G20720.3	1.9e-07	30.61	chaperonin 20	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020818	GroES chaperonin family	SMART	SM00883	Cpn10_2	coord: 46..132 e-value: 8.2E-14 score: 61.9
IPR020818	GroES chaperonin family	PFAM	PF00166	Cpn10	coord: 46..132 e-value: 3.2E-15 score: 55.9
IPR020818	GroES chaperonin family	PANTHER	PTHR10772	10 KDA HEAT SHOCK PROTEIN	coord: 20..132
IPR020818	GroES chaperonin family	CDD	cd00320	cpn10	coord: 46..132 e-value: 2.62238E-19 score: 74.8511
IPR037124	GroES chaperonin superfamily	GENE3D	2.30.33.40	GroES chaperonin	coord: 42..133 e-value: 1.2E-14 score: 56.1
None	No IPR available	PANTHER	PTHR10772:SF13	10 KDA CHAPERONIN 1, CHLOROPLASTIC-RELATED	coord: 20..132
IPR011032	GroES-like superfamily	SUPERFAMILY	50129	GroES-like	coord: 46..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G000860.1	ClCG06G000860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051085	chaperone cofactor-dependent protein refolding
biological_process	GO:0006457	protein folding
cellular_component	GO:0005759	mitochondrial matrix
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051082	unfolded protein binding