ClCG05G023400 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G023400
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr05: 35234477 .. 35234878 (-)
RNA-Seq Expression	ClCG05G023400
Synteny	ClCG05G023400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAACACTAGTTACATCAATACAAGTCCAGAGTCTTCTTTTGCCCAGCATTTCCATATCCTTGGTAAGAAATGTTCAAGCTTGGACATTTCAACCAATCTCTTGTACTGTATATTGTGCTTCTCCTTCAAAACAGTCACCCTTATTCTCTTGTTTCCTTATGAGCAAGTGGATGGGAATCCTGTGCCTGCTATAATCTTCAAAGGCCTTCCATCAACATTTCATGCCTTTCTACTCTCAATTGTGATGGCATTCTCAGGCGCATTCAACGCCTTGATGCTTGCTACTAATAAGCCAAAAATTGCCAAGTTTTGCAGCTACTATTCTATGGGATTTATGGCTTCAGCTGTAGTTTTATTGTTTTGGGCTGTGTTTCAGACAGTTTTTAACCTGAGATAA

mRNA sequence

ATGAAAAACACTAGTTACATCAATACAAGTCCAGAGTCTTCTTTTGCCCAGCATTTCCATATCCTTGGTAAGAAATGTTCAAGCTTGGACATTTCAACCAATCTCTTGTACTGTATATTGTGCTTCTCCTTCAAAACAGTCACCCTTATTCTCTTGTTTCCTTATGAGCAAGTGGATGGGAATCCTGTGCCTGCTATAATCTTCAAAGGCCTTCCATCAACATTTCATGCCTTTCTACTCTCAATTGTGATGGCATTCTCAGGCGCATTCAACGCCTTGATGCTTGCTACTAATAAGCCAAAAATTGCCAAGTTTTGCAGCTACTATTCTATGGGATTTATGGCTTCAGCTGTAGTTTTATTGTTTTGGGCTGTGTTTCAGACAGTTTTTAACCTGAGATAA

Coding sequence (CDS)

ATGAAAAACACTAGTTACATCAATACAAGTCCAGAGTCTTCTTTTGCCCAGCATTTCCATATCCTTGGTAAGAAATGTTCAAGCTTGGACATTTCAACCAATCTCTTGTACTGTATATTGTGCTTCTCCTTCAAAACAGTCACCCTTATTCTCTTGTTTCCTTATGAGCAAGTGGATGGGAATCCTGTGCCTGCTATAATCTTCAAAGGCCTTCCATCAACATTTCATGCCTTTCTACTCTCAATTGTGATGGCATTCTCAGGCGCATTCAACGCCTTGATGCTTGCTACTAATAAGCCAAAAATTGCCAAGTTTTGCAGCTACTATTCTATGGGATTTATGGCTTCAGCTGTAGTTTTATTGTTTTGGGCTGTGTTTCAGACAGTTTTTAACCTGAGATAA

Protein sequence

MKNTSYINTSPESSFAQHFHILGKKCSSLDISTNLLYCILCFSFKTVTLILLFPYEQVDGNPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSMGFMASAVVLLFWAVFQTVFNLR

Homology

[Close]

BLAST of ClCG05G023400 vs. NCBI nr
Match: XP_022992466.1 (uncharacterized protein LOC111488762 [Cucurbita maxima])

HSP 1 Score: 224.9 bits (572), Expect = 4.0e-55
Identity = 113/133 (84.96%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 1   MKNTSYINTSPESSFAQHFHILGKKCSSLDISTNLLYCILCFSFKTVTLILLFPYEQVDG 60
           MKN   IN SPE+SF QHFHILGK CS LDISTNL+YCILC SFKTVTLILLFPYEQV+G
Sbjct: 39  MKNAGAINMSPETSFPQHFHILGKACSRLDISTNLMYCILCCSFKTVTLILLFPYEQVNG 98

Query: 61  NPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSMGFMASAVVL 120
           NPVP IIFKGLPSTFHAFLLS VMAFSGAFNALML+ NKPKIA+FCSYYSM FMASAVVL
Sbjct: 99  NPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARFCSYYSMAFMASAVVL 158

Query: 121 LFWAVFQTVFNLR 134
           L WAV+QTVFN R
Sbjct: 159 LIWAVYQTVFNRR 171

[Close]

BLAST of ClCG05G023400 vs. NCBI nr
Match: KAG6601352.1 (hypothetical protein SDJN03_06585, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224.6 bits (571), Expect = 5.2e-55
Identity = 112/133 (84.21%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 1   MKNTSYINTSPESSFAQHFHILGKKCSSLDISTNLLYCILCFSFKTVTLILLFPYEQVDG 60
           MKN   IN SPE+SF QHFHILGK CS LDISTNL+YCILC SFKTVTLILLFPYEQV+G
Sbjct: 1   MKNAGAINMSPETSFPQHFHILGKACSRLDISTNLMYCILCCSFKTVTLILLFPYEQVNG 60

Query: 61  NPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSMGFMASAVVL 120
           NPVP +IFKGLPSTFHAFLLS VMAFSGAFNALML+ NKPKIA+FCSYYSM FMASAVVL
Sbjct: 61  NPVPTVIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARFCSYYSMAFMASAVVL 120

Query: 121 LFWAVFQTVFNLR 134
           L WAV+QTVFN R
Sbjct: 121 LIWAVYQTVFNRR 133

[Close]

BLAST of ClCG05G023400 vs. NCBI nr
Match: KAE8648779.1 (hypothetical protein Csa_009128 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 3.3e-33
Identity = 86/133 (64.66%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 1   MKNTSYINTSPESSFAQHFHILGKKCSSLDISTNLLYCILCFSFKTVTLILLFPYEQVDG 60
           MKN   IN SP++ FAQHFHIL                                   V+G
Sbjct: 10  MKNRRDINKSPDTCFAQHFHIL-----------------------------------VNG 69

Query: 61  NPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSMGFMASAVVL 120
           N VPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYS+GFM SAVVL
Sbjct: 70  NLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSLGFMVSAVVL 107

Query: 121 LFWAVFQTVFNLR 134
            FWAVFQTVFNLR
Sbjct: 130 FFWAVFQTVFNLR 107

[Close]

BLAST of ClCG05G023400 vs. NCBI nr
Match: XP_003518808.1 (uncharacterized protein LOC100777541 [Glycine max] >XP_028204275.1 uncharacterized protein LOC114388145 [Glycine soja] >KAG5062924.1 hypothetical protein JHK85_004107 [Glycine max] >KAG5079868.1 hypothetical protein JHK86_003933 [Glycine max] >KHN29916.1 hypothetical protein glysoja_014734 [Glycine soja] >KRH71052.1 hypothetical protein GLYMA_02G125900v4 [Glycine max] >RZC24688.1 hypothetical protein D0Y65_003736 [Glycine soja])

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-18
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 35  LLYCILCFSFKTVTLILLFPYEQVDGNPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALM 94
           LL C+L   FK +T++L  PYE +D NP+P I+FKG P TFHAF+  I+ AFSGA NAL 
Sbjct: 21  LLECVLGLCFKVITILLQLPYEYIDNNPIPTIVFKGRPRTFHAFITCIIFAFSGATNAL- 80

Query: 95  LATNKPKIAKFCSYYSMGFMASAVVLLFWAVFQTVFN 132
           +A NK + ++ C YY+M  MASA+ +L WAV  T  N
Sbjct: 81  VAFNKSRFSRLCGYYAMASMASALAILLWAVCCTGIN 116

[Close]

BLAST of ClCG05G023400 vs. NCBI nr
Match: EOY01535.1 (Uncharacterized protein TCM_011399 [Theobroma cacao])

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-18
Identity = 55/112 (49.11%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 14  SFAQHFHILGKKCSSLDISTNLLYCILCFSFKTVTLILLFPYEQVDGNPVPAIIFKGLPS 73
           +F  H     +  SS+ + T +L  IL  SF   T+++L P+E V G+PVP I+FKG P+
Sbjct: 14  TFYPHHVSFSEMLSSIAVQTTILESILFISFTVATILILLPHEYVKGSPVPIIVFKGHPA 73

Query: 74  TFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSMGFMASAVVLLFWAV 126
           TFHAF + I+ AFSGAF ALM   N P+IA  C  YS+  MASA+ LL WAV
Sbjct: 74  TFHAFTICIIFAFSGAFCALM-TPNSPRIASLCGCYSIASMASAIGLLIWAV 124

[Close]

BLAST of ClCG05G023400 vs. ExPASy TrEMBL
Match: A0A0A0KT20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G607970 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 6.0e-57
Identity = 118/133 (88.72%), Postives = 122/133 (91.73%), Query Frame = 0


Query: 1   MKNTSYINTSPESSFAQHFHILGKKCSSLDISTNLLYCILCFSFKTVTLILLFPYEQVDG 60
           MKN   IN SP++ FAQHFHILGK CSSLDISTNLLY ILC SFKTVTLILLFPYEQV+G
Sbjct: 10  MKNRRDINKSPDTCFAQHFHILGKTCSSLDISTNLLYSILCLSFKTVTLILLFPYEQVNG 69

Query: 61  NPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSMGFMASAVVL 120
           N VPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYS+GFM SAVVL
Sbjct: 70  NLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSLGFMVSAVVL 129

Query: 121 LFWAVFQTVFNLR 134
            FWAVFQTVFNLR
Sbjct: 130 FFWAVFQTVFNLR 142

[Close]

BLAST of ClCG05G023400 vs. ExPASy TrEMBL
Match: A0A6J1JTM5 (uncharacterized protein LOC111488762 OS=Cucurbita maxima OX=3661 GN=LOC111488762 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.9e-55
Identity = 113/133 (84.96%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 1   MKNTSYINTSPESSFAQHFHILGKKCSSLDISTNLLYCILCFSFKTVTLILLFPYEQVDG 60
           MKN   IN SPE+SF QHFHILGK CS LDISTNL+YCILC SFKTVTLILLFPYEQV+G
Sbjct: 39  MKNAGAINMSPETSFPQHFHILGKACSRLDISTNLMYCILCCSFKTVTLILLFPYEQVNG 98

Query: 61  NPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSMGFMASAVVL 120
           NPVP IIFKGLPSTFHAFLLS VMAFSGAFNALML+ NKPKIA+FCSYYSM FMASAVVL
Sbjct: 99  NPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARFCSYYSMAFMASAVVL 158

Query: 121 LFWAVFQTVFNLR 134
           L WAV+QTVFN R
Sbjct: 159 LIWAVYQTVFNRR 171

[Close]

BLAST of ClCG05G023400 vs. ExPASy TrEMBL
Match: A0A5B7B2W8 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032285 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.5e-20
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 35  LLYCILCFSFKTVTLILLFPYEQVDGNPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALM 94
           +L  IL  SF T  +++  PYE +DGNPVP IIFKGLPS FHAFL+ I+ AFSGA+  LM
Sbjct: 41  ILESILFASFTTANILIRLPYENIDGNPVPTIIFKGLPSAFHAFLICIIFAFSGAYCGLM 100

Query: 95  LATNKPKIAKFCSYYSMGFMASAVVLLFWA 125
           +  +KP++A FC Y SM  MASAV LL WA
Sbjct: 101 MIPHKPRLATFCGYCSMASMASAVALLIWA 130

[Close]

BLAST of ClCG05G023400 vs. ExPASy TrEMBL
Match: A0A5B7B649 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032284 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.7e-20
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 35  LLYCILCFSFKTVTLILLFPYEQVDGNPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALM 94
           +L  IL  SF T  +++  PYE +DGNPVP IIFKGLPS FHAFL+ I+ AFSGA+  LM
Sbjct: 48  ILESILFASFTTANILIRLPYENIDGNPVPTIIFKGLPSAFHAFLICIIFAFSGAYCGLM 107

Query: 95  LATNKPKIAKFCSYYSMGFMASAVVLLFWA 125
           +  +KP++A FC Y SM  MASAV L+ WA
Sbjct: 108 MIPHKPRLATFCGYCSMASMASAVALMIWA 137

[Close]

BLAST of ClCG05G023400 vs. ExPASy TrEMBL
Match: A0A5B7B2L8 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032286 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.7e-20
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 35  LLYCILCFSFKTVTLILLFPYEQVDGNPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALM 94
           +L  IL  SF T  +++  PYE +DGNPVP IIFKGLPS FHAFL+ I+ AFSGA+  LM
Sbjct: 47  ILESILFASFTTANILIRLPYENIDGNPVPTIIFKGLPSAFHAFLICIIFAFSGAYCGLM 106

Query: 95  LATNKPKIAKFCSYYSMGFMASAVVLLFWA 125
           +  +KP++A FC Y SM  MASAV L+ WA
Sbjct: 107 MIPHKPRLATFCGYCSMASMASAVALMIWA 136

The following BLAST results are available for this feature:

BLAST of ClCG05G023400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992466.1	4.0e-55	84.96	uncharacterized protein LOC111488762 [Cucurbita maxima]	[more]
KAG6601352.1	5.2e-55	84.21	hypothetical protein SDJN03_06585, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8648779.1	3.3e-33	64.66	hypothetical protein Csa_009128 [Cucumis sativus]	[more]
XP_003518808.1	2.3e-18	52.58	uncharacterized protein LOC100777541 [Glycine max] >XP_028204275.1 uncharacteriz...	[more]
EOY01535.1	3.0e-18	49.11	Uncharacterized protein TCM_011399 [Theobroma cacao]	[more]

BLAST of ClCG05G023400 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G023400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT20	6.0e-57	88.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G607970 PE=4 SV=1	[more]
A0A6J1JTM5	1.9e-55	84.96	uncharacterized protein LOC111488762 OS=Cucurbita maxima OX=3661 GN=LOC111488762...	[more]
A0A5B7B2W8	4.5e-20	58.89	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032285...	[more]
A0A5B7B649	7.7e-20	57.78	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032284...	[more]
A0A5B7B2L8	7.7e-20	57.78	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032286...	[more]

BLAST of ClCG05G023400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G023400.1	ClCG05G023400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane