ClCG05G019790 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G019790
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr05: 32027733 .. 32029878 (-)
RNA-Seq Expression	ClCG05G019790
Synteny	ClCG05G019790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAGCAAAAAGCGAAGAAACTTGCGAAATTTTTTGTCTAACTTGTGAAAAAGTAATCCTAATCTTCTCTGTTCAAAAGGGTTTTGTAAGCTTTTTGAAATCTTTCACATGATTGCTGAGCCACTTTAATCATGAACCCCAATTTCCTCAGTCTCAGCCCCAAAAATGGTCCTGAATTGCTTGTCCATGCCGTCACACGGGCGGCTGAAAGCCCTCTGCCACCGCGCACTCGTGCGCGCTTGACGCAAATTCAAAAGCCCTTTTGTGAGTTGAATCTTTCTCTCTCTTTCTTTATGCACTTTTATCTGTTTCTGCAATTGAATTTTTCTCCATGATTGTTGAAAAGACTGAGAACCCTTTACGTGTGGGACTACTGATCACTGGGTTGTGATATGATCAGGTGGGGTTCTTTATATTCTATGAAATTGGCCAATCAGGCAGCTATATCTCATCATCATCATCATCATCAATCTCTGTATTTTTTTGATGGTTCAGTTAGAGTTCAAAGGATCTAAGTTGATTAGAGTTTTTGAGTGGACTTTTGAATTATTGTTATCTCTTTCTATTATGGTACTTTCGGTTTTGAGTTGGGAGGTGTACTCTTTTTGAATTCTGTGGCTATGGTTTTGTTGGACTCACTTGCAAAACCCATTCCATTCTGTCCCCACTCTGAAATCTGATTCAAGCTCTTTTTCCACAAACTCGAAATTTGTTTGAGATCAATCTCTTTTATCGTGGGGTAAGTTCTTATGAGCATTTTCCTTTGCCCTGGTGAATTTCTTATGAAGCTTCACTTTCAATTTTACTCAGCAACTGAGTGATTGAATTCATAATGTTAAGAGTAAGATAATGATGATGATGATGAGAAAGAGATAGACGTGGGGAAGGGGGAAAGGGTTCTGTGGTATGTCAATTCTAGGACAAGTTTGGATATGGAAATGCCAATTTTTAGCCTCAACTTTATGAAATATTTTGAAGTTTTTCCAATTGAATTTCTGAAATATTCTTACTGTTAAGTTTTAATTGAACAGTGAAACCTATCTGTCTTAAAGTATGAGCTATGAGATAGGACATATTAAGAGTAAACAACCTTTCTAGCATTGCGGTTCCTCTCAAAAGCCCGTAGCTTTTTCATAGCATTGTCAGCAAAGCAACTGAAAATAATCTCTTTATGTTCTGTTCTGTTATGTTCTTCATTTATTGATTCTGAATGGTTCATTCAATTTTTTGTACTAATAACACATGAAACATCATAATCTATGCCCAAGCCAACGAGGTTATTAAAATTATTATACTTCACAATCAAGAATCGTATATTAAGAACAATTAATCATTGGCCTTTTTACACTAAATACCAACTTCATTTCTTTGAGCTTTTGGAAGCCATGCAGAGGAGTTGAAATCATTGACGACTCTCTCTCTCTCTGGATATTTTACAGGAATCCGAATTCGCAAGTAAAGAAGATTTACTGTTAATATCAGCTCTTGACGTTGGCTTTATCTTCTTTAGCAATGGAGTTCTTGCAGTGAGCAATGGCAGCTTGAATTGCAGACTGCAACTCTTCCATGGTGCTATCACTTGTAGAAGAAGTCATAGATGGAGTTGCAACGAGAAGGCCACTATTTGTTGGGGATGTCCTCATGGATGCTGGTGCTGAGAATTCTCCTCTTCTTCCTCGCAATTCTTGCCTGTGTCGCGGATTCAAATTACCTGAAAACGAATAAGCTTGTCGACGTATGTGCAAGTTCTCTTTCCTCCATCTGAAGAACAATGGCCTGACCACTCTTGCATATCGTTTTAGAACTTGACTAACATCAAATCCCAGCTTCCTCTTATGCTTTGCTTTATCTTCTTGCTCGGTAATCTCGCACCCTTTTCGCCATTTTGCAAATCCAAAAAATGAGAAAGGCTTAGATTTGGTTCTCCCACCTGTTTCAATAGGTTCAGTTTCCTGGTGCTTGGTGCTGCTGGTGCTGCAACTTGAGCTGTCTTTGAGGGGCTCTTCACTGTCCCAAATCTCTTTGATTGGGATGGTGAAGCTGTCCATGGAATTGGTGGAGGAGCGAGGCGAAGAAGGAAGGTGGGAGAGGAGATGAAGGGGAAGCAAGTGGCCATGGAAGAAGATGTCATCTGCAGGAGATAA

mRNA sequence

CAAAAAGCAAAAAGCGAAGAAACTTGCGAAATTTTTTGTCTAACTTGTGAAAAAGTAATCCTAATCTTCTCTGTTCAAAAGGGTTTTGTAAGCTTTTTGAAATCTTTCACATGATTGCTGAGCCACTTTAATCATGAACCCCAATTTCCTCAGTCTCAGCCCCAAAAATGGTCCTGAATTGCTTGTCCATGCCGTCACACGGGCGGCTGAAAGCCCTCTGCCACCGCGCACTCGTGCGCGCTTGACGCAAATTCAAAAGCCCTTTTGAATCCGAATTCGCAAGTAAAGAAGATTTACTGTTAATATCAGCTCTTGACGTTGGCTTTATCTTCTTTAGCAATGGAGTTCTTGCAGTGAGCAATGGCAGCTTGAATTGCAGACTGCAACTCTTCCATGGTGCTATCACTTGTAGAAGAAGTCATAGATGGAGTTGCAACGAGAAGGCCACTATTTGTTGGGGATGTCCTCATGGATGCTGGTGCTGAGAATTCTCCTCTTCTTCCTCGCAATTCTTGCCTGTGTCGCGGATTCAAATTACCTGAAAACGAATAAGCTTGTCGACGGGCTCTTCACTGTCCCAAATCTCTTTGATTGGGATGGTGAAGCTGTCCATGGAATTGGTGGAGGAGCGAGGCGAAGAAGGAAGGTGGGAGAGGAGATGAAGGGGAAGCAAGTGGCCATGGAAGAAGATGTCATCTGCAGGAGATAA

Coding sequence (CDS)

ATGGAGTTGCAACGAGAAGGCCACTATTTGTTGGGGATGTCCTCATGGATGCTGGTGCTGAGAATTCTCCTCTTCTTCCTCGCAATTCTTGCCTGTGTCGCGGATTCAAATTACCTGAAAACGAATAAGCTTGTCGACGGGCTCTTCACTGTCCCAAATCTCTTTGATTGGGATGGTGAAGCTGTCCATGGAATTGGTGGAGGAGCGAGGCGAAGAAGGAAGGTGGGAGAGGAGATGAAGGGGAAGCAAGTGGCCATGGAAGAAGATGTCATCTGCAGGAGATAA

Protein sequence

MELQREGHYLLGMSSWMLVLRILLFFLAILACVADSNYLKTNKLVDGLFTVPNLFDWDGEAVHGIGGGARRRRKVGEEMKGKQVAMEEDVICRR

Homology

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BLAST of ClCG05G019790 vs. NCBI nr
Match: KAF7830637.1 (uncharacterized protein G2W53_012970 [Senna tora])

HSP 1 Score: 57.4 bits (137), Expect = 7.8e-05
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 44 LVDGLFTVPNLFDWDGEAVHGIGGGARRRRKVGEEMKGKQVAMEEDVICRR 95
          L+D +  V      +GEAVHG GGGAR  R+V EE++GK+VA+EEDVIC R
Sbjct: 24 LIDAVVVVNGFL--EGEAVHGSGGGARGEREVREEVEGKEVAVEEDVICGR 72

The following BLAST results are available for this feature:

BLAST of ClCG05G019790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7830637.1	7.8e-05	56.86	uncharacterized protein G2W53_012970 [Senna tora]	[more]

BLAST of ClCG05G019790 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G019790 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G019790 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..32 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G019790.1	ClCG05G019790.1	mRNA