ClCG05G015665 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G015665
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Ribonuclease H
Location	CG_Chr05: 27526753 .. 27527106 (-)
RNA-Seq Expression	ClCG05G015665
Synteny	ClCG05G015665

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCTATAAAGTACATTTTTGAAAAGTCGTATTCGTCTAGTAGGATAGCCAAATGGCAAGTATTGCTATCGGAGTACGATATTGTCTATGTCACCAGAAAGGTCATAAAAGGGAGTGCAATCGTCGATTGTCTAGCTGCATTGCCTATTGAAGACTATGAGCTAATGAAATTTGAATTTTCAGATGAAGACATCATGACGATATCCACATTGAATGTGGCACAGGATCCCGAAACATGGATAATGTTGTTTGATGGAGCCACGAACGAAGTGGGTCATGGTGTAGGGGCTATTTTTATATTTCCAGATGGGAAGTTGTATCCCCTAATTGCTAAGTTATACTTTGATTGA

mRNA sequence

ATGGATCCTATAAAGTACATTTTTGAAAAGTCGTATTCGTCTAGTAGGATAGCCAAATGGCAAGTATTGCTATCGGAGTACGATATTGTCTATGTCACCAGAAAGGTCATAAAAGGGAGTGCAATCGTCGATTGTCTAGCTGCATTGCCTATTGAAGACTATGAGCTAATGAAATTTGAATTTTCAGATGAAGACATCATGACGATATCCACATTGAATGTGGCACAGGATCCCGAAACATGGATAATGTTGTTTGATGGAGCCACGAACGAAGTGGGTCATGGTGTAGGGGCTATTTTTATATTTCCAGATGGGAAGTTGTATCCCCTAATTGCTAAGTTATACTTTGATTGA

Coding sequence (CDS)

ATGGATCCTATAAAGTACATTTTTGAAAAGTCGTATTCGTCTAGTAGGATAGCCAAATGGCAAGTATTGCTATCGGAGTACGATATTGTCTATGTCACCAGAAAGGTCATAAAAGGGAGTGCAATCGTCGATTGTCTAGCTGCATTGCCTATTGAAGACTATGAGCTAATGAAATTTGAATTTTCAGATGAAGACATCATGACGATATCCACATTGAATGTGGCACAGGATCCCGAAACATGGATAATGTTGTTTGATGGAGCCACGAACGAAGTGGGTCATGGTGTAGGGGCTATTTTTATATTTCCAGATGGGAAGTTGTATCCCCTAATTGCTAAGTTATACTTTGATTGA

Protein sequence

MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFEFSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIFIFPDGKLYPLIAKLYFD

Homology

[Close]

BLAST of ClCG05G015665 vs. NCBI nr
Match: XP_016899404.1 (PREDICTED: uncharacterized protein LOC107990505 [Cucumis melo] >KAA0054926.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa] >TYK22715.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 185.7 bits (470), Expect = 2.4e-43
Identity = 90/117 (76.92%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 1   MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFE 60
           MDPIKYIFEK   S RIAKWQVL SEYDI+YVTR V+KGSAI DCLA LP+EDYELMKFE
Sbjct: 1   MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFE 60

Query: 61  FSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
           F DED+MT+S  +  QD E W M FDGATNEVGHGVGAI  FPDGK YPL AKLYFD
Sbjct: 61  FLDEDVMTVS--DTPQDTEIWTMFFDGATNEVGHGVGAILTFPDGKSYPLTAKLYFD 115

[Close]

BLAST of ClCG05G015665 vs. NCBI nr
Match: KAA0033845.1 (uncharacterized protein E6C27_scaffold43059G00190 [Cucumis melo var. makuwa] >TYK01227.1 uncharacterized protein E5676_scaffold49G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 170.6 bits (431), Expect = 7.9e-39
Identity = 84/117 (71.79%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFE 60
           MDPIKYIFEKS    RIAKWQVLL EYDI+YVTRK +KGSAIVDCLA  P+EDYE MK E
Sbjct: 64  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIE 123

Query: 61  FSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
           F DED+M +S  +  QD E W M FDGATNEVGHGVGAI    DGK YPL  KLYFD
Sbjct: 124 FPDEDVMIVS--DTLQDTEIWTMFFDGATNEVGHGVGAILTSSDGKSYPLTTKLYFD 178

[Close]

BLAST of ClCG05G015665 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 77/117 (65.81%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1    MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFE 60
            MDPIKYIFEK   S RIA+WQVLLSEYDIVYVTRK IKGSA+ D LA  PI DY  +KF+
Sbjct: 1219 MDPIKYIFEKPSLSGRIARWQVLLSEYDIVYVTRKAIKGSALADYLAQQPINDYIPVKFD 1278

Query: 61   FSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
            F DE I TI+    + DP+TW M+FDGA+NE+GHG+G I I P G+LYPL A+L FD
Sbjct: 1279 FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGGILISPKGELYPLTARLCFD 1335

[Close]

BLAST of ClCG05G015665 vs. NCBI nr
Match: XP_022158764.1 (uncharacterized protein LOC111025231 [Momordica charantia])

HSP 1 Score: 159.5 bits (402), Expect = 1.8e-35
Identity = 77/117 (65.81%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFE 60
           MDPIKYIFEK     RIA+WQVLLSEYDIVYVTRK IKG A+ D LA  PI DY  +KF+
Sbjct: 288 MDPIKYIFEKPSLLGRIARWQVLLSEYDIVYVTRKAIKGGALADYLAQQPINDYIPVKFD 347

Query: 61  FSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
           F DE I TI+T   + DP+TW M+FDGA+NE+GHG+GAI I P G+LYPL A+L FD
Sbjct: 348 FPDEYISTITTSEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLCFD 404

[Close]

BLAST of ClCG05G015665 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 159.1 bits (401), Expect = 2.4e-35
Identity = 77/117 (65.81%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 1    MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFE 60
            MDPIKYIFEK   S  IA+WQVLLSEYDIVYVT+K IKGSA+ D LA  PI DY  +KF+
Sbjct: 1610 MDPIKYIFEKPSLSGGIARWQVLLSEYDIVYVTQKAIKGSALADYLAQQPINDYIPVKFD 1669

Query: 61   FSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
            F DE I TI+    + DP+TW M+FDGA+NE+GHG+GAI I P G+LYPLIA+L FD
Sbjct: 1670 FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLIARLCFD 1726

[Close]

BLAST of ClCG05G015665 vs. ExPASy TrEMBL
Match: A0A5A7UKV4 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00350 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 90/117 (76.92%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 1   MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFE 60
           MDPIKYIFEK   S RIAKWQVL SEYDI+YVTR V+KGSAI DCLA LP+EDYELMKFE
Sbjct: 1   MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFE 60

Query: 61  FSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
           F DED+MT+S  +  QD E W M FDGATNEVGHGVGAI  FPDGK YPL AKLYFD
Sbjct: 61  FLDEDVMTVS--DTPQDTEIWTMFFDGATNEVGHGVGAILTFPDGKSYPLTAKLYFD 115

[Close]

BLAST of ClCG05G015665 vs. ExPASy TrEMBL
Match: A0A1S4DTT9 (uncharacterized protein LOC107990505 OS=Cucumis melo OX=3656 GN=LOC107990505 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 90/117 (76.92%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 1   MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFE 60
           MDPIKYIFEK   S RIAKWQVL SEYDI+YVTR V+KGSAI DCLA LP+EDYELMKFE
Sbjct: 1   MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFE 60

Query: 61  FSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
           F DED+MT+S  +  QD E W M FDGATNEVGHGVGAI  FPDGK YPL AKLYFD
Sbjct: 61  FLDEDVMTVS--DTPQDTEIWTMFFDGATNEVGHGVGAILTFPDGKSYPLTAKLYFD 115

[Close]

BLAST of ClCG05G015665 vs. ExPASy TrEMBL
Match: A0A5D3BPI8 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00050 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.8e-39
Identity = 84/117 (71.79%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFE 60
           MDPIKYIFEKS    RIAKWQVLL EYDI+YVTRK +KGSAIVDCLA  P+EDYE MK E
Sbjct: 64  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIE 123

Query: 61  FSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
           F DED+M +S  +  QD E W M FDGATNEVGHGVGAI    DGK YPL  KLYFD
Sbjct: 124 FPDEDVMIVS--DTLQDTEIWTMFFDGATNEVGHGVGAILTSSDGKSYPLTTKLYFD 178

[Close]

BLAST of ClCG05G015665 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.7e-36
Identity = 77/117 (65.81%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1    MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFE 60
            MDPIKYIFEK   S RIA+WQVLLSEYDIVYVTRK IKGSA+ D LA  PI DY  +KF+
Sbjct: 1219 MDPIKYIFEKPSLSGRIARWQVLLSEYDIVYVTRKAIKGSALADYLAQQPINDYIPVKFD 1278

Query: 61   FSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
            F DE I TI+    + DP+TW M+FDGA+NE+GHG+G I I P G+LYPL A+L FD
Sbjct: 1279 FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGGILISPKGELYPLTARLCFD 1335

[Close]

BLAST of ClCG05G015665 vs. ExPASy TrEMBL
Match: A0A6J1E0D0 (uncharacterized protein LOC111025231 OS=Momordica charantia OX=3673 GN=LOC111025231 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 8.8e-36
Identity = 77/117 (65.81%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MDPIKYIFEKSYSSSRIAKWQVLLSEYDIVYVTRKVIKGSAIVDCLAALPIEDYELMKFE 60
           MDPIKYIFEK     RIA+WQVLLSEYDIVYVTRK IKG A+ D LA  PI DY  +KF+
Sbjct: 288 MDPIKYIFEKPSLLGRIARWQVLLSEYDIVYVTRKAIKGGALADYLAQQPINDYIPVKFD 347

Query: 61  FSDEDIMTISTLNVAQDPETWIMLFDGATNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
           F DE I TI+T   + DP+TW M+FDGA+NE+GHG+GAI I P G+LYPL A+L FD
Sbjct: 348 FPDEYISTITTSEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLCFD 404

The following BLAST results are available for this feature:

BLAST of ClCG05G015665 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899404.1	2.4e-43	76.92	PREDICTED: uncharacterized protein LOC107990505 [Cucumis melo] >KAA0054926.1 Ret...	[more]
KAA0033845.1	7.9e-39	71.79	uncharacterized protein E6C27_scaffold43059G00190 [Cucumis melo var. makuwa] >TY...	[more]
XP_022158986.1	1.4e-35	65.81	LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]	[more]
XP_022158764.1	1.8e-35	65.81	uncharacterized protein LOC111025231 [Momordica charantia]	[more]
XP_022147189.1	2.4e-35	65.81	LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]	[more]

BLAST of ClCG05G015665 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G015665 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKV4	1.1e-43	76.92	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A1S4DTT9	1.1e-43	76.92	uncharacterized protein LOC107990505 OS=Cucumis melo OX=3656 GN=LOC107990505 PE=...	[more]
A0A5D3BPI8	3.8e-39	71.79	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1E2J7	6.7e-36	65.81	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1	[more]
A0A6J1E0D0	8.8e-36	65.81	uncharacterized protein LOC111025231 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of ClCG05G015665 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..113
None	No IPR available	PANTHER	PTHR24559:SF322	RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE), RIBONUCLEASE H-LIKE PROTEIN	coord: 2..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G015665.1	ClCG05G015665.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity