ClCG05G013290 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG05G013290
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr05: 18764536 .. 18767340 (+)
RNA-Seq ExpressionClCG05G013290
SyntenyClCG05G013290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCATAATCGAAGACAAGAATGGGCGAGCACGGATTGTGGTCTATACGTTGTTGGAGCAAGGGTCTCACTAGCTCACTCGTTGGAAGCTGCTGCTAGTCATCACCACTTGTCGGTGTGTTGGCCGGACTAAAACATTTGGGAAAAGGTGGGTTTGGGAATAATTGCATAGAGGGCCCCAATGAAAAGTAACCCCAAGTTTAAAACCAATGAAATTTGGCCTTTATTGATGTCATCACCCTGTGAAATTACCACATGAACCCTTCCTCCTTTCTTTCTTCCTTTGTCCTTTGCAACATTTTTCTTTTTCTTTTCTTCATTTTTTTTCCTTTTTTCTCTTGCATTTTTTTGCACTTCTTCTTCTAGGGTTTTACTCCCACTACCAACCCACCTTGTTGAAATTTCCAGTTGCCCTCTTTTTCGACAATTTCTTTTCTTCATGTCGCCACCTTCTTCTTCTGGAATCAAAGATGTTAGTTAGAGCGTGAACAAGAACGAGAGGAAGAAATGAGTGTGAGACCAAGAAATGAGAGAAAGAAGCAAGAGCGAAAATTCAAAGGAAGAAAAAAAAACTTGAAGAAAAAATTATAAAATTTATGAGGAAGAAGCTGGAAGAAGAAGCTAGAGGAAAAATTCAAATGAAGGAAAAAATTAAGGAAAAAATTTAGAAATTTTTTTGTAGTTGTGTCTAATAAGGAACCAGAGGAAAAAGCGAGAGGAAGACATGAGCAAGAGGAAGAAATGAAGAATGAGAGGAAGAAACGAGAATTTGTTTTGAGTGTTCAACTCTCGCACGTAGTATGAGAACAATATGGTACTTTCACACGCAGCTGATGTAAGCAGAAGACCATTTTTCAAGTAAATTTGAATCTTGGGCGAAATTTCATTTGGGTCCCTAAGAAGGAATTATCCATAATAATAATAATAATAATAATAATAATAATAAAAACAACGTGAGTTTGGGTTTGGCTTCGGGATAAGAGGAAGAAATGAAGAGTGCAAGGAAGAAACGAGAATTCGTTTTGAGTGTTTAACTCTTGTGCGTAGTCTAAGAATAATATGGTACTTTCAGATGTGAATCTTGGGCAAAATTTCATTTAGGTCCCTAGGAAGGGATCATTCATTAAAAAAAAACACACACATAACATGGATTTGGGTTTGGCTTCACAATAGGAGGAAGGGAGGAGAAAAAGGATTGGGGTTTCTTTACCTCTCTTTTTTTTTCTTTCTTTCTTCTTTTCCTTTTTAGGAGAAAAGTGCCAACCAAATAAAAGAAAACTTGGATTAATATTTAATTCCCAGTAGAATACTCTTTTACCAAAATTGACACCTAAAACAAAGATCCAAAACAAAGATTTAAAAGGTATGGGAAAAAACCTAATATTACCAAGATCTTGAAATTAAAGATTTTAATTACAAAAATCTCTTTTTCTAACATTTAAAGAAATTTAATTTGGCTAGCTTAAGAGGTTAAACTGAAATTCTAATTTTTCAAGGTAGAATCAACAATCAACAACTGAGGAGTCCCATTTATTTAGAATTAATGGGTCAAAAGAAATTTAAAGTCGTAATTTGATACAAATATCCATCTTGATAAACCACACGAACAAAATTGACATTTAAAGGATCTAATAGATGAGTTGGATGGTCACTTCTCTTGTGCCTTGGGTTTGAAAAATTATTCAAAAAGACCACCACAATGTAGTTGCCAATTTTGCATTGTTTTGATATACAAGAGAGAAATTGCAAAAATACCTTGAAATTGTACCGAGTAATTATAAGAAAGTAGGCAGATCTTTCAATCCACATCAAACAGTTATTCCGCCTCAATTTTTCCTTGGCCAGGGATTCTGAAGAAACCCTTCATTAAGTTGTCTTGGCCTATACCTTTACTAGTTGCATTGCAACTGAGCAGCTCGGTGGCCATGGATTCTTGTTGATGGTAAAGCTTTCATGCACTCTCTCGCAGCAGCCAAACTCAACATTGTTCCATCCTATCAAAAAAAGACATAGGAACGAACAGCCAGGTCAACGACAAGAGATTGAAGAGACTTATTTATGGAAAAACTATTAACATTGTGAAAAAATTACCATTCATTCAAATAAAAGTTGAGCTATTGAGATAAAGGAAAGAATTGTGCCTAGAACAGCTACTTCACAATCGAGTCGAACATAGCTCGAAGGTTGACGGCTCAAACTTGTTTTGATCACTAAAGGCCTATTTCGTAACAATTTGGTTTTCAATTTTTTTTTTTTTAAATTAAGCCTATAAACACTCTACTCCTAAATTTTCTAAATTTCTTGCTTTGTGTATACTTTCTACCAATGTTTTAAAAAAACAAACCAAAATTTGAAAAACTAAACAAAATAGTTCTTAAAAAACTTGTTTTTTAAATTTGCCCAAGAATTCAACCTTATACTTTAAAAAGATGCAAATCATGGTAAGAAAATAAAAGAAAGTAGGCTTAATTTTCAAAAACCAAAAACAAAAAAGTTAACAAACAGAGTCTACATAAAAATATTTAAAAGCTATTTCAATCAGGTGCAAAAAGACTCCAAATCTACCTTTTAGGTCTGCCTCAGTAAACTTTGCCCCCCAATGAAGGTTTCTGAACTCAACCTGCATGCTTCTAATACGCGAGGAAGAGGAAGGAGTGATCTAGGCGCTAGAGAGACCTCAGTCTCACCCTTTGACACTGAGCTAGAGATCAACCAGGAAGACTTGTCAAGTTGGTCGAAAAGGAAGAAAGGTTTGAGGTACTTCCCCGATCTCATGGCATTGGAGGCAGTGGCAAACTTGTAA

mRNA sequence

ATGAAGCATAATCGAAGACAAGAATGGGCGAGCACGGATTGTGGTCTATACGTTGTTGGAGCAAGGGTCTCACTAGCTCACTCGTTGGAAGCTGCTGCTAGTCATCACCACTTGTCGGTCTGCCTCAGTAAACTTTGCCCCCCAATGAAGGTTTCTGAACTCAACCTGCATGCTTCTAATACGCGAGGAAGAGGAAGGAGTGATCTAGGCGCTAGAGAGACCTCAGTCTCACCCTTTGACACTGAGCTAGAGATCAACCAGGAAGACTTGTCAAGTTGGTCGAAAAGGAAGAAAGGTTTGAGGTACTTCCCCGATCTCATGGCATTGGAGGCAGTGGCAAACTTGTAA

Coding sequence (CDS)

ATGAAGCATAATCGAAGACAAGAATGGGCGAGCACGGATTGTGGTCTATACGTTGTTGGAGCAAGGGTCTCACTAGCTCACTCGTTGGAAGCTGCTGCTAGTCATCACCACTTGTCGGTCTGCCTCAGTAAACTTTGCCCCCCAATGAAGGTTTCTGAACTCAACCTGCATGCTTCTAATACGCGAGGAAGAGGAAGGAGTGATCTAGGCGCTAGAGAGACCTCAGTCTCACCCTTTGACACTGAGCTAGAGATCAACCAGGAAGACTTGTCAAGTTGGTCGAAAAGGAAGAAAGGTTTGAGGTACTTCCCCGATCTCATGGCATTGGAGGCAGTGGCAAACTTGTAA

Protein sequence

MKHNRRQEWASTDCGLYVVGARVSLAHSLEAAASHHHLSVCLSKLCPPMKVSELNLHASNTRGRGRSDLGARETSVSPFDTELEINQEDLSSWSKRKKGLRYFPDLMALEAVANL
Homology
[Close]
BLAST of ClCG05G013290 vs. NCBI nr
Match: KAE8650781.1 (hypothetical protein Csa_017536 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-14
Identity = 48/67 (71.64%), Postives = 51/67 (76.12%), Query Frame = 0 

Query: 49  MKVSELNLHASNTRGRGRSDLGARETSVSPFDTELEINQEDLSSWSKRKKGLRYFPDLMA 108
           MKVSELN  ASN   RGRSD  +RE SVSP D  LE+N EDLSS+SK K G RYFPDLMA
Sbjct: 1   MKVSELNRDASNRCERGRSDRSSREISVSPLDNVLEVNLEDLSSFSKWKMGCRYFPDLMA 60

Query: 109 LEAVANL 116
           LE VANL
Sbjct: 61  LELVANL 67

The following BLAST results are available for this feature:
BLAST of ClCG05G013290 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650781.11.3e-1471.64hypothetical protein Csa_017536 [Cucumis sativus][more]
BLAST of ClCG05G013290 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG05G013290 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG05G013290 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G013290.1ClCG05G013290.1mRNA