ClCG05G007940 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G007940
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr05: 8593099 .. 8594899 (-)
RNA-Seq Expression	ClCG05G007940
Synteny	ClCG05G007940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAATCGGACGTGCAATTCAGCAAAACGGAGCCGTTTTGGACCAATGAGAAGCACGTGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCAATGTTCGAAAGTCGCAACCATCGCCGCTGTCTACGGCTGGACCGCCACTTGCCGGACACCGCTGACTCAACCCTAGATTCCCCTCAGAAGGACACAAAAAACCATGCCACCTCCGGTGAGTCGTTTAATGTTACATTTTTTCCCACTCATTTTCTAGGTCTTTAATTTAACCTTTTGTTTTTTTTTTTTTTTTTCATTTTCTAAAAAGCGCATTATTGTGGTCAATAATAGGATTAAGGTTGGAGTGGTTTTTGGTTAACGTGAAAAAACCCCATTATTTTCGTTTTTTTTTTTTTTGGTATTTATTTATTTATACCAAAAAGGACCAACCAAACAGCGCCTAAAAAATACGATAAAAATGGGAATAGTGAATATTCCTTAGGAAGATATTTATTTGTGATTTAGATATCACTATAAAAATCACTTTCTTTTCACTCCAAAAAGATCATTAATATTCTTTCTTTTCTGGTTGCTTGCATTTTCTTTTTTTTTTTTTTCTCTTATTATTGCCTTTTTTTTATTTCTTTTGGCTGTGATCCAGGAGATGCCAGAATCAACGGTAGATCTATCAGGAGATCAAGGAGGATATCATCTCTACCGCACACTTCGACTCAAGATCAGGCTAGTGCAGAAACCATATAATATAAACATTACATTTCTTCTTTCTTTCTTTTTTCTCTACCAATTATAGAAATTATATTTATGACCAGTTTTTGCTTTTATAACATTTTTGTCTTTATCTCTCTTTAATCTTCTCTTTTTCCATCAAAATTATGCTCTATTTTTGCGGCTGGTGTGGGTATTTCGTAATGCCACGTGGATATACATTCTTATGAAAAAGTTACCATTTTGTGATTAAGCTAAACTCTAAAAATAAGAGATTCAATTCAAATGGAGATATATATTTTTTATAATAAATTTAGAAACTAATTCTAATTTAAGCCATGGTTTAAAATGTATTTGATATTATATTTATATATTCTAAAATTAGTTGTGGTTGATCACTAAAATGTTAGGTCACAATAAATTATTACTAATTTATTTATGAATATATTTTTTTAAAATATAATTTATTTATGAATATTAAAATTTTTGTATAATTATTCTTTTGTAATATTATATAATTTATAATACATTTTTAATTAAAAAAAATTAAATTGATGTTATAACATGACTATATTTCTATATATTTTTATTTAATATAAATCTGCATTTTAAAATTTTAAATTCTAAATTTAGATACAATAAAAAAAATAATATTATTTTCAGAATTTATATTATTCTAGTGACATAATTTGAAAACAGTTTTCATTAATAGTATTTAAGTTGTTTGCCAAATAATACATATTTACTAAATTTGAAAACATAAAACAAAATTCAGATGGTTAACTAAACATACCTTAAATTTTCTTAATTTAAATTAAAGTATTAAAATTTATAAAAACACAACAAAAATATCTCCTTCAATTATTAAACGAACCTCATCAATTATCTTCTCTCTCTCTCTCTCTCCTTTTTTTTTCCTTTGTAACAATCCTCATCAATCATCACTATCTTATAAATTACACATAAATTACTTAGAAAATAACATATTTTTATAATTAATTAATTAATGAAATGACAGGTGGTCCCACAGATGGAAAAGAGAGCAGTTGAAGATGAAGATGAGAGTGACCATCCCATCTCATTTATCAACTAA

mRNA sequence

ATGGAAGAATCGGACGTGCAATTCAGCAAAACGGAGCCGTTTTGGACCAATGAGAAGCACGTGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCAATGTTCGAAAGTCGCAACCATCGCCGCTGTCTACGGCTGGACCGCCACTTGCCGGACACCGCTGACTCAACCCTAGATTCCCCTCAGAAGGACACAAAAAACCATGCCACCTCCGGTGAGTCGTTTAATGTTACATTTTTTCCCACTCATTTTCTAGCGCCTAAAAAATACGATAAAAATGGGAATAGTGAATATTCCTTAGGAAGATATTTATTTGAGATGCCAGAATCAACGGTAGATCTATCAGGAGATCAAGGAGGATATCATCTCTACCGCACACTTCGACTCAAGATCAGGCTAGTGGTCCCACAGATGGAAAAGAGAGCAGTTGAAGATGAAGATGAGAGTGACCATCCCATCTCATTTATCAACTAA

Coding sequence (CDS)

ATGGAAGAATCGGACGTGCAATTCAGCAAAACGGAGCCGTTTTGGACCAATGAGAAGCACGTGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCAATGTTCGAAAGTCGCAACCATCGCCGCTGTCTACGGCTGGACCGCCACTTGCCGGACACCGCTGACTCAACCCTAGATTCCCCTCAGAAGGACACAAAAAACCATGCCACCTCCGGTGAGTCGTTTAATGTTACATTTTTTCCCACTCATTTTCTAGCGCCTAAAAAATACGATAAAAATGGGAATAGTGAATATTCCTTAGGAAGATATTTATTTGAGATGCCAGAATCAACGGTAGATCTATCAGGAGATCAAGGAGGATATCATCTCTACCGCACACTTCGACTCAAGATCAGGCTAGTGGTCCCACAGATGGAAAAGAGAGCAGTTGAAGATGAAGATGAGAGTGACCATCCCATCTCATTTATCAACTAA

Protein sequence

MEESDVQFSKTEPFWTNEKHVHFLNSMEASFVRSMFESRNHRRCLRLDRHLPDTADSTLDSPQKDTKNHATSGESFNVTFFPTHFLAPKKYDKNGNSEYSLGRYLFEMPESTVDLSGDQGGYHLYRTLRLKIRLVVPQMEKRAVEDEDESDHPISFIN

Homology

[Close]

BLAST of ClCG05G007940 vs. NCBI nr
Match: XP_038882732.1 (uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida])

HSP 1 Score: 146.0 bits (367), Expect = 2.8e-31
Identity = 90/158 (56.96%), Postives = 103/158 (65.19%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHVHFLNSMEASFVRSMFESRN-HRRCLRLDRHLPDTADSTLDS 62
           ES VQFS+T PFWTNEKH+HFLNSMEASFV+SMFE+RN HRR LRLDRHLPDTADSTLDS
Sbjct: 2   ESHVQFSETGPFWTNEKHMHFLNSMEASFVQSMFENRNHHRRRLRLDRHLPDTADSTLDS 61

Query: 63  PQK-DTKNHATSGESFNVTFFPTHFLAPKKYDKNGNSEYSLGRYLFEMPESTVDLSGDQG 122
           PQK DTKNHATS E+  +               NG S     R +  +P ++     DQ 
Sbjct: 62  PQKDDTKNHATS-EAVRI---------------NGRSS-RRSRRISSLPHTSTQ---DQ- 121

Query: 123 GYHLYRTLRLKIRLVVPQMEKRAVEDEDESDHPISFIN 159
                         VVPQ+EKRAVEDEDE DHP+S +N
Sbjct: 122 --------------VVPQIEKRAVEDEDERDHPMSPVN 124

[Close]

BLAST of ClCG05G007940 vs. NCBI nr
Match: XP_038882735.1 (uncharacterized protein LOC120073889 isoform X2 [Benincasa hispida])

HSP 1 Score: 145.6 bits (366), Expect = 3.7e-31
Identity = 89/158 (56.33%), Postives = 100/158 (63.29%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHVHFLNSMEASFVRSMFESRN-HRRCLRLDRHLPDTADSTLDS 62
           ES VQFS+T PFWTNEKH+HFLNSMEASFV+SMFE+RN HRR LRLDRHLPDTADSTLDS
Sbjct: 2   ESHVQFSETGPFWTNEKHMHFLNSMEASFVQSMFENRNHHRRRLRLDRHLPDTADSTLDS 61

Query: 63  PQK-DTKNHATSGESFNVTFFPTHFLAPKKYDKNGNSEYSLGRYLFEMPESTVDLSGDQG 122
           PQK DTKNHATS                     NG S     R +  +P ++     DQ 
Sbjct: 62  PQKDDTKNHATSAVRI-----------------NGRSS-RRSRRISSLPHTSTQ---DQ- 121

Query: 123 GYHLYRTLRLKIRLVVPQMEKRAVEDEDESDHPISFIN 159
                         VVPQ+EKRAVEDEDE DHP+S +N
Sbjct: 122 --------------VVPQIEKRAVEDEDERDHPMSPVN 123

[Close]

BLAST of ClCG05G007940 vs. NCBI nr
Match: XP_022984701.1 (uncharacterized protein LOC111482903 isoform X2 [Cucurbita maxima])

HSP 1 Score: 144.4 bits (363), Expect = 8.1e-31
Identity = 83/156 (53.21%), Postives = 99/156 (63.46%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHVHFLNSMEASFVRSMFESRNHRRCLRLDRHLPDTADSTLDSP 62
           ES VQFS+T+PFWTNEKH+HFLNSMEASFVRSMF++RNHRR LRLDRHL DTADSTLDSP
Sbjct: 2   ESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDSP 61

Query: 63  QKDTKNHATSGESFNVTFFPTHFLAPKKYDKNGNSEYSLGRYLFEMPESTVDLSGDQGGY 122
           QK+ K H+ SG                    +G S     R +  +P +++    DQ   
Sbjct: 62  QKNRKKHSISGTRM-----------------DGRSS-RRSRRIPSLPHTSIQ---DQ--- 121

Query: 123 HLYRTLRLKIRLVVPQMEKRAVEDEDESDHPISFIN 159
                       VVPQME+RAVEDEDE DHP+S +N
Sbjct: 122 ------------VVPQMEERAVEDEDERDHPLSPVN 121

[Close]

BLAST of ClCG05G007940 vs. NCBI nr
Match: XP_023552559.1 (uncharacterized protein LOC111810184 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.9 bits (359), Expect = 2.4e-30
Identity = 82/156 (52.56%), Postives = 98/156 (62.82%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHVHFLNSMEASFVRSMFESRNHRRCLRLDRHLPDTADSTLDSP 62
           ES VQFS+T+PFWTNEKH+HFLNSMEASFVRSMF++RNHRR LRLDRHL DTADSTLDSP
Sbjct: 2   ESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRLLRLDRHLSDTADSTLDSP 61

Query: 63  QKDTKNHATSGESFNVTFFPTHFLAPKKYDKNGNSEYSLGRYLFEMPESTVDLSGDQGGY 122
            K+ K H+ SG                    +G S     R +  +P +++    DQ   
Sbjct: 62  HKNRKKHSISGTRM-----------------DGRSS-RRSRRIPSLPHTSIQ---DQ--- 121

Query: 123 HLYRTLRLKIRLVVPQMEKRAVEDEDESDHPISFIN 159
                       VVPQME+RAVEDEDE DHP+S +N
Sbjct: 122 ------------VVPQMEERAVEDEDERDHPMSPVN 121

[Close]

BLAST of ClCG05G007940 vs. NCBI nr
Match: KAG7014778.1 (hypothetical protein SDJN02_22407 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.7 bits (356), Expect = 5.3e-30
Identity = 82/156 (52.56%), Postives = 99/156 (63.46%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHVHFLNSMEASFVRSMFESRNHRRCLRLDRHLPDTADSTLDSP 62
           ES VQFS+T+PFWTNEKH+HFLNSMEASFVRSMF++RN+RR LRLDRHL DTADSTLDSP
Sbjct: 2   ESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDSP 61

Query: 63  QKDTKNHATSGESFNVTFFPTHFLAPKKYDKNGNSEYSLGRYLFEMPESTVDLSGDQGGY 122
           QK+ K H+ SG                    +G S     R +  +P +++    DQ   
Sbjct: 62  QKNRKKHSISGTRM-----------------DGRSS-RRSRRIPSLPHTSIQ---DQ--- 121

Query: 123 HLYRTLRLKIRLVVPQMEKRAVEDEDESDHPISFIN 159
                       VVPQME+RAVEDEDE DHP+S +N
Sbjct: 122 ------------VVPQMEERAVEDEDERDHPMSPVN 121

[Close]

BLAST of ClCG05G007940 vs. ExPASy TrEMBL
Match: A0A6J1J606 (uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.9e-31
Identity = 83/156 (53.21%), Postives = 99/156 (63.46%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHVHFLNSMEASFVRSMFESRNHRRCLRLDRHLPDTADSTLDSP 62
           ES VQFS+T+PFWTNEKH+HFLNSMEASFVRSMF++RNHRR LRLDRHL DTADSTLDSP
Sbjct: 2   ESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDSP 61

Query: 63  QKDTKNHATSGESFNVTFFPTHFLAPKKYDKNGNSEYSLGRYLFEMPESTVDLSGDQGGY 122
           QK+ K H+ SG                    +G S     R +  +P +++    DQ   
Sbjct: 62  QKNRKKHSISGTRM-----------------DGRSS-RRSRRIPSLPHTSIQ---DQ--- 121

Query: 123 HLYRTLRLKIRLVVPQMEKRAVEDEDESDHPISFIN 159
                       VVPQME+RAVEDEDE DHP+S +N
Sbjct: 122 ------------VVPQMEERAVEDEDERDHPLSPVN 121

[Close]

BLAST of ClCG05G007940 vs. ExPASy TrEMBL
Match: A0A6J1JBA6 (uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.4e-30
Identity = 81/156 (51.92%), Postives = 98/156 (62.82%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHVHFLNSMEASFVRSMFESRNHRRCLRLDRHLPDTADSTLDSP 62
           ES VQFS+T+PFWTNEKH+HFLNSMEASFVRSMF++RNHRR LRLDRHL DTADSTLDSP
Sbjct: 2   ESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDSP 61

Query: 63  QKDTKNHATSGESFNVTFFPTHFLAPKKYDKNGNSEYSLGRYLFEMPESTVDLSGDQGGY 122
           QK+ K H+ S                 + D   +      R +  +P +++    DQ   
Sbjct: 62  QKNRKKHSIS--------------VGTRMDGRSSRR---SRRIPSLPHTSIQ---DQ--- 121

Query: 123 HLYRTLRLKIRLVVPQMEKRAVEDEDESDHPISFIN 159
                       VVPQME+RAVEDEDE DHP+S +N
Sbjct: 122 ------------VVPQMEERAVEDEDERDHPLSPVN 122

[Close]

BLAST of ClCG05G007940 vs. ExPASy TrEMBL
Match: A0A6J1CHV7 (uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011640 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.4e-30
Identity = 87/157 (55.41%), Postives = 99/157 (63.06%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHVHFLNSMEASFVRSMFESRNH-RRCLRLDRHLPDTADSTLDS 62
           ES VQF++T   WTNEKH+HFLNSMEASFVRSMFE+R H RR LRLDRHLPDT+DSTLDS
Sbjct: 28  ESHVQFNETGSCWTNEKHMHFLNSMEASFVRSMFENRTHRRRRLRLDRHLPDTSDSTLDS 87

Query: 63  PQKDTKNHATSGESFNVTFFPTHFLAPKKYDKNGNSEYSLGRYLFEMPESTVDLSGDQGG 122
           PQKD KNHATSG +                  +G S  S  R    +P ++   + DQ  
Sbjct: 88  PQKDRKNHATSGAA----------------TIDGRSS-SRSRTRSSLPHTS---NQDQ-- 147

Query: 123 YHLYRTLRLKIRLVVPQMEKRAVEDEDESDHPISFIN 159
                        VVPQMEKRAVEDEDE DHP+S IN
Sbjct: 148 -------------VVPQMEKRAVEDEDERDHPMSPIN 149

[Close]

BLAST of ClCG05G007940 vs. ExPASy TrEMBL
Match: A0A6J1EAV1 (uncharacterized protein LOC111430892 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430892 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 7.4e-30
Identity = 81/156 (51.92%), Postives = 99/156 (63.46%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHVHFLNSMEASFVRSMFESRNHRRCLRLDRHLPDTADSTLDSP 62
           ES VQFS+T+PFWTNEKH+HFLNSMEASFVRSMF++RN+RR L+LDRHL DTADSTLDSP
Sbjct: 2   ESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDSP 61

Query: 63  QKDTKNHATSGESFNVTFFPTHFLAPKKYDKNGNSEYSLGRYLFEMPESTVDLSGDQGGY 122
           QK+ K H+ SG                    +G S     R +  +P +++    DQ   
Sbjct: 62  QKNRKKHSISGTRM-----------------DGRSS-RRSRRIPSLPHTSIQ---DQ--- 121

Query: 123 HLYRTLRLKIRLVVPQMEKRAVEDEDESDHPISFIN 159
                       VVPQME+RAVEDEDE DHP+S +N
Sbjct: 122 ------------VVPQMEERAVEDEDERDHPMSPVN 121

[Close]

BLAST of ClCG05G007940 vs. ExPASy TrEMBL
Match: A0A6J1E5I2 (uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430892 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 8.2e-29
Identity = 79/156 (50.64%), Postives = 98/156 (62.82%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHVHFLNSMEASFVRSMFESRNHRRCLRLDRHLPDTADSTLDSP 62
           ES VQFS+T+PFWTNEKH+HFLNSMEASFVRSMF++RN+RR L+LDRHL DTADSTLDSP
Sbjct: 2   ESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDSP 61

Query: 63  QKDTKNHATSGESFNVTFFPTHFLAPKKYDKNGNSEYSLGRYLFEMPESTVDLSGDQGGY 122
           QK+ K H+ S                 + D   +      R +  +P +++    DQ   
Sbjct: 62  QKNRKKHSIS--------------VGTRMDGRSSRR---SRRIPSLPHTSIQ---DQ--- 121

Query: 123 HLYRTLRLKIRLVVPQMEKRAVEDEDESDHPISFIN 159
                       VVPQME+RAVEDEDE DHP+S +N
Sbjct: 122 ------------VVPQMEERAVEDEDERDHPMSPVN 122

The following BLAST results are available for this feature:

BLAST of ClCG05G007940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882732.1	2.8e-31	56.96	uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida]	[more]
XP_038882735.1	3.7e-31	56.33	uncharacterized protein LOC120073889 isoform X2 [Benincasa hispida]	[more]
XP_022984701.1	8.1e-31	53.21	uncharacterized protein LOC111482903 isoform X2 [Cucurbita maxima]	[more]
XP_023552559.1	2.4e-30	52.56	uncharacterized protein LOC111810184 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
KAG7014778.1	5.3e-30	52.56	hypothetical protein SDJN02_22407 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of ClCG05G007940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G007940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J606	3.9e-31	53.21	uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JBA6	4.4e-30	51.92	uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1CHV7	4.4e-30	55.41	uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1EAV1	7.4e-30	51.92	uncharacterized protein LOC111430892 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1E5I2	8.2e-29	50.64	uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of ClCG05G007940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..73
None	No IPR available	PANTHER	PTHR33676:SF15	SUBFAMILY NOT NAMED	coord: 4..149
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 4..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G007940.2	ClCG05G007940.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0009409	response to cold