ClCG05G006090 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G006090
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	transcription elongation factor B polypeptide 3
Location	CG_Chr05: 6051278 .. 6051988 (+)
RNA-Seq Expression	ClCG05G006090
Synteny	ClCG05G006090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGAAGAAGTATGTAAAATCACTTCATCCTTTCTTAATAATCTTTCCATTAACGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGTGATGCTGATTTAAATCTTCTAGACCGTATTTTGCCACATTGTACTATTAATCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTGTGACCGACAAGTTGTGGAAAAATTTCTATGAGAAAAAGTTTGGTAAGAACGATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAATATATGAGGCAAAGATGGAGGAGTTCGAAAAGAAGGCAAGGAAAATTGAGGCTCGATATATACAAAACTGTCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTTCCTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAATCAATTGAGTTTGGATGCAATGCCACCGAGAGCAAGCTTTTGAAGAAGTCGAAGAGAGAAGAACAAATTTGTGAAGTTTCATCTATGAACAATAATAAGAAGAAACAAAGTTTTGGAGGAACAACCAAACCTAGACATAATACTAAGCCAACCAAGATATGGAAGAAAGCAAAGAGAGAAGCGTTGCAATGTATAGAGACAAAGAACCTAATAGCTTTTCGAAGAAATGCGATGCAAAAGTAG

mRNA sequence

ATGTATGAAGAAGTATGTAAAATCACTTCATCCTTTCTTAATAATCTTTCCATTAACGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGTGATGCTGATTTAAATCTTCTAGACCGTATTTTGCCACATTGTACTATTAATCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTGTGACCGACAAGTTGTGGAAAAATTTCTATGAGAAAAAGTTTGGTAAGAACGATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAATATATGAGGCAAAGATGGAGGAGTTCGAAAAGAAGGCAAGGAAAATTGAGGCTCGATATATACAAAACTGTCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTTCCTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAATCAATTGAGTTTGGATGCAATGCCACCGAGAGCAAGCTTTTGAAGAAGTCGAAGAGAGAAGAACAAATTTGTGAAGTTTCATCTATGAACAATAATAAGAAGAAACAAAGTTTTGGAGGAACAACCAAACCTAGACATAATACTAAGCCAACCAAGATATGGAAGAAAGCAAAGAGAGAAGCGTTGCAATGTATAGAGACAAAGAACCTAATAGCTTTTCGAAGAAATGCGATGCAAAAGTAG

Coding sequence (CDS)

ATGTATGAAGAAGTATGTAAAATCACTTCATCCTTTCTTAATAATCTTTCCATTAACGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGTGATGCTGATTTAAATCTTCTAGACCGTATTTTGCCACATTGTACTATTAATCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTGTGACCGACAAGTTGTGGAAAAATTTCTATGAGAAAAAGTTTGGTAAGAACGATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAATATATGAGGCAAAGATGGAGGAGTTCGAAAAGAAGGCAAGGAAAATTGAGGCTCGATATATACAAAACTGTCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTTCCTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAATCAATTGAGTTTGGATGCAATGCCACCGAGAGCAAGCTTTTGAAGAAGTCGAAGAGAGAAGAACAAATTTGTGAAGTTTCATCTATGAACAATAATAAGAAGAAACAAAGTTTTGGAGGAACAACCAAACCTAGACATAATACTAAGCCAACCAAGATATGGAAGAAAGCAAAGAGAGAAGCGTTGCAATGTATAGAGACAAAGAACCTAATAGCTTTTCGAAGAAATGCGATGCAAAAGTAG

Protein sequence

MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK

Homology

[Close]

BLAST of ClCG05G006090 vs. NCBI nr
Match: XP_038885873.1 (uncharacterized protein LOC120076176 [Benincasa hispida])

HSP 1 Score: 323.6 bits (828), Expect = 1.5e-84
Identity = 175/237 (73.84%), Postives = 198/237 (83.54%), Query Frame = 0


Query: 1   MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKG 60
           M EEV KI SSFL++ SINEAIDSL+FLGDVGD DL++L+RILPHCT++QLMHIENSSKG
Sbjct: 1   MCEEVSKIASSFLSHDSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKG 60

Query: 61  RDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEA 120
           RDLTPVTDKLWKNFYEKKFGKND D VI++MK+KKESFKWKQ+YEAKME  EKKA +IEA
Sbjct: 61  RDLTPVTDKLWKNFYEKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120

Query: 121 RYIQNCQKEKAQKESRQIIFCGG-SSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQI 180
           RY QNCQKE A+K+SR+IIFC   SS  NKKRR EG +I+  CN TESK+LKK  RE Q+
Sbjct: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKRRSEG-TIKSECNTTESKILKKPNREAQM 180

Query: 181 CEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
           C+VSS          GGTTKP H TK +KI KKAKREALQCIETKN+IAFRRNAMQK
Sbjct: 181 CQVSS----------GGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK 226

[Close]

BLAST of ClCG05G006090 vs. NCBI nr
Match: XP_038885879.1 (uncharacterized protein LOC120076185 [Benincasa hispida])

HSP 1 Score: 310.8 bits (795), Expect = 9.8e-81
Identity = 170/237 (71.73%), Postives = 193/237 (81.43%), Query Frame = 0


Query: 1   MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKG 60
           M EEV KI SSFL++ SINEAID+L+FL DVGD DL++L RILPHCT++QL+HIENSSKG
Sbjct: 1   MCEEVSKIASSFLSHDSINEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKG 60

Query: 61  RDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEA 120
           RDLT VTDKLWKNFY KKFGKND+D  IERMK+KKESFKWKQ+YEAKME  EKKA +IEA
Sbjct: 61  RDLTLVTDKLWKNFYVKKFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120

Query: 121 RYIQNCQKEKAQKESRQIIFCGG-SSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQI 180
           RY QNCQKE A+K+SR+IIFC   SS  NKK R EG +I+  CN TESK+LKK  RE Q+
Sbjct: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKGRSEG-TIKSECNTTESKILKKPNREAQM 180

Query: 181 CEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
           C+VSS          GGTTKP H TK +KI KKAKREALQCIETKN+IAFRRNAMQK
Sbjct: 181 CQVSS----------GGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK 226

[Close]

BLAST of ClCG05G006090 vs. NCBI nr
Match: XP_022979571.1 (uncharacterized protein LOC111479252 [Cucurbita maxima])

HSP 1 Score: 226.1 bits (575), Expect = 3.2e-55
Identity = 125/219 (57.08%), Postives = 157/219 (71.69%), Query Frame = 0


Query: 18  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AIDSL+FLGDVG  DLN L+ ILPHCT++QLMHIEN SKGRDLTP+T+KLWK FYE+
Sbjct: 5   VNKAIDSLRFLGDVGQTDLNFLEHILPHCTVDQLMHIENCSKGRDLTPITNKLWKTFYER 64

Query: 78  KFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKESRQ 137
           KFGK+D + V++RMKH KESF+WKQ+YE K++E E KA ++E RYI+NCQ EKA+K+SRQ
Sbjct: 65  KFGKDDVNCVVDRMKH-KESFRWKQMYELKIKELEDKAVEVEKRYIRNCQNEKARKQSRQ 124

Query: 138 IIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGT 197
           +  C  S                      SK+LKK K   ++C+VSS NNNK+    GGT
Sbjct: 125 VKICEIS--------------------PSSKVLKKPKVHTKVCQVSSANNNKRSY-LGGT 184

Query: 198 TKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
                    +KI KKA++E LQ IETKNLIAFRRNA+QK
Sbjct: 185 ---------SKILKKARKETLQSIETKNLIAFRRNAIQK 192

[Close]

BLAST of ClCG05G006090 vs. NCBI nr
Match: KAG6582214.1 (hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.4 bits (568), Expect = 2.1e-54
Identity = 127/219 (57.99%), Postives = 157/219 (71.69%), Query Frame = 0


Query: 18  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AIDSL+FLGDVG  DLN L+ ILPHCT++QLMHIEN SKGRDLTPVT+KLWK FYEK
Sbjct: 5   VNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENCSKGRDLTPVTNKLWKTFYEK 64

Query: 78  KFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKESRQ 137
           KFG++  + V+ERMKH KESF+WKQ+YE KM+E E+KA +IE RYIQNC+ EK +K+SRQ
Sbjct: 65  KFGEDGVNGVLERMKH-KESFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKNRKQSRQ 124

Query: 138 IIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGT 197
           +  C  S                      SK+LKK K + +IC+VSS  NNK+  S+GG 
Sbjct: 125 VKICEIS--------------------PSSKVLKKPKVQTKICQVSSATNNKR--SYGGG 184

Query: 198 TKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
           T        +KI KKA++E  Q IETKNLIAFRRNA+QK
Sbjct: 185 T--------SKILKKARKETRQSIETKNLIAFRRNAIQK 192

[Close]

BLAST of ClCG05G006090 vs. NCBI nr
Match: KAG6582092.1 (hypothetical protein SDJN03_22094, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221.1 bits (562), Expect = 1.0e-53
Identity = 127/219 (57.99%), Postives = 155/219 (70.78%), Query Frame = 0


Query: 18  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AIDSL+FLGDVG+ DLN L+RILPHCT+ QLM IEN SKGRDLTPVT+KLWK FYE+
Sbjct: 5   VNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64

Query: 78  KFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKESRQ 137
           KFGK+  + V+E MKH KESFKWKQ+YE K++E E+KA +IE RYIQNC+ EKA+K+SRQ
Sbjct: 65  KFGKDAVNGVLEMMKH-KESFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQSRQ 124

Query: 138 IIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGT 197
           +  C  S                      SK+LKK K   +IC+VSS NNNK+    GGT
Sbjct: 125 VKICEIS--------------------PSSKVLKKPKVHTKICQVSSANNNKRSY-VGGT 184

Query: 198 TKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
                    +KI KKA++E LQ IETKN IAFRRNA+QK
Sbjct: 185 ---------SKILKKARKETLQSIETKNAIAFRRNAVQK 192

[Close]

BLAST of ClCG05G006090 vs. ExPASy TrEMBL
Match: A0A6J1IR58 (uncharacterized protein LOC111479252 OS=Cucurbita maxima OX=3661 GN=LOC111479252 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.5e-55
Identity = 125/219 (57.08%), Postives = 157/219 (71.69%), Query Frame = 0


Query: 18  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AIDSL+FLGDVG  DLN L+ ILPHCT++QLMHIEN SKGRDLTP+T+KLWK FYE+
Sbjct: 5   VNKAIDSLRFLGDVGQTDLNFLEHILPHCTVDQLMHIENCSKGRDLTPITNKLWKTFYER 64

Query: 78  KFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKESRQ 137
           KFGK+D + V++RMKH KESF+WKQ+YE K++E E KA ++E RYI+NCQ EKA+K+SRQ
Sbjct: 65  KFGKDDVNCVVDRMKH-KESFRWKQMYELKIKELEDKAVEVEKRYIRNCQNEKARKQSRQ 124

Query: 138 IIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGT 197
           +  C  S                      SK+LKK K   ++C+VSS NNNK+    GGT
Sbjct: 125 VKICEIS--------------------PSSKVLKKPKVHTKVCQVSSANNNKRSY-LGGT 184

Query: 198 TKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
                    +KI KKA++E LQ IETKNLIAFRRNA+QK
Sbjct: 185 ---------SKILKKARKETLQSIETKNLIAFRRNAIQK 192

[Close]

BLAST of ClCG05G006090 vs. ExPASy TrEMBL
Match: A0A6J1ITM2 (uncharacterized protein LOC111479243 OS=Cucurbita maxima OX=3661 GN=LOC111479243 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 4.2e-53
Identity = 125/219 (57.08%), Postives = 154/219 (70.32%), Query Frame = 0


Query: 18  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AIDSL+FLGDVG  DLN L+ ILPHCT+ QLM IENSSKGRDLTPVT+KLWK FYE+
Sbjct: 5   VNKAIDSLRFLGDVGQTDLNFLEHILPHCTVEQLMRIENSSKGRDLTPVTNKLWKTFYER 64

Query: 78  KFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKESRQ 137
           KFGK+  + V+E MKH KESFKWKQ+YE K++E E+KA +IE RYIQNCQ EKA+K+SRQ
Sbjct: 65  KFGKDAVNGVLEMMKH-KESFKWKQMYELKIKELEEKAVEIEKRYIQNCQNEKARKQSRQ 124

Query: 138 IIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGT 197
           +  C  S                      SK+LKKSK   + C+VSS +N+K+    GGT
Sbjct: 125 VKICEIS--------------------PSSKVLKKSKVHTKFCQVSSAHNDKRSY-LGGT 184

Query: 198 TKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
                    +KI KKA++E LQ IETKN+IAFRRN +QK
Sbjct: 185 ---------SKILKKARKETLQSIETKNVIAFRRNTVQK 192

[Close]

BLAST of ClCG05G006090 vs. ExPASy TrEMBL
Match: A0A0A0KJR8 (Nudix hydrolase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G511010 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.0e-43
Identity = 98/176 (55.68%), Postives = 130/176 (73.86%), Query Frame = 0


Query: 15  NLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNF 74
           N  +N+AIDS+KFLGDVGD DL  L+ IL HCT +QL+HIEN SKGRDLTP+T+KLWKNF
Sbjct: 12  NSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKNF 71

Query: 75  YEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKE 134
           YE+KFGK+D D V+     K E+FKW  +Y AKM+E E +A+KIE R IQ+ QKEKA+K+
Sbjct: 72  YERKFGKDDVDIVV-----KNETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 131

Query: 135 SRQIIFCGG-SSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNK 190
           SRQI+FCG   S ++ K     +++ F  N T+S  LKK+KRE  + +VS+ +N +
Sbjct: 132 SRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTLKKAKRELHVPKVSTSSNKE 182

[Close]

BLAST of ClCG05G006090 vs. ExPASy TrEMBL
Match: A0A5D3BGR1 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00180 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 6.3e-41
Identity = 103/224 (45.98%), Postives = 135/224 (60.27%), Query Frame = 0


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+++FLGDVG+ D++LL+RILPHCT++QLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
            FYE++FGK     VIERM+ K+ +F+W Q+YEAKM++ EK   K   R  Q+  KE A+
Sbjct: 70  KFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENAR 129

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQ 192
           K+SRQI  C    P + KR F G    +G N   +K                        
Sbjct: 130 KQSRQIQICSKVPPSSNKRSFGGSG--YGYNVANTK------------------------ 189

Query: 193 SFGGTTKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
                          KI KKAK E LQ  E KN+ A+RRNA+QK
Sbjct: 190 --------------NKILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

[Close]

BLAST of ClCG05G006090 vs. ExPASy TrEMBL
Match: A0A1S4E1U0 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 6.3e-41
Identity = 103/224 (45.98%), Postives = 135/224 (60.27%), Query Frame = 0


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+++FLGDVG+ D++LL+RILPHCT++QLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQ 132
            FYE++FGK     VIERM+ K+ +F+W Q+YEAKM++ EK   K   R  Q+  KE A+
Sbjct: 70  KFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENAR 129

Query: 133 KESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQ 192
           K+SRQI  C    P + KR F G    +G N   +K                        
Sbjct: 130 KQSRQIQICSKVPPSSNKRSFGGSG--YGYNVANTK------------------------ 189

Query: 193 SFGGTTKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
                          KI KKAK E LQ  E KN+ A+RRNA+QK
Sbjct: 190 --------------NKILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

[Close]

BLAST of ClCG05G006090 vs. TAIR 10
Match: AT2G42780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )

HSP 1 Score: 114.8 bits (286), Expect = 9.6e-26
Identity = 69/204 (33.82%), Postives = 123/204 (60.29%), Query Frame = 0


Query: 1   MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKG 60
           ++E + K   S L +L + +AID++K++G VG  D  LL++IL HCT+ QL HIE+++  
Sbjct: 2   LFERLTKKPPS-LVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDD 61

Query: 61  RDLTPVTDKLWKNFYEKKFGKNDYDFVIERMK-HKKESFKWKQIYEAKMEEFEKKARKIE 120
            DL+P+TDK WK FY+K +G+ D   +IE ++ +K   FKW+ +YE K+   ++K +++ 
Sbjct: 62  TDLSPITDKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELG 121

Query: 121 ARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIE-FGCNATESKLLKKSK---- 180
            R  +  + E  +K+SRQ   C  + P   KR F G S   +     +S ++KK+K    
Sbjct: 122 GRLKERYKDENERKQSRQTKVCSKAPP--SKRPFWGNSASGYNLGHVKSNIMKKAKIDLL 181

Query: 181 REEQICEVSSMNNNKKKQSFGGTT 199
           + +++  ++++  N  ++SF  +T
Sbjct: 182 KSQEVKNLTAIKRNTIQKSFSIST 202

[Close]

BLAST of ClCG05G006090 vs. TAIR 10
Match: AT2G42780.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684). )

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-25
Identity = 68/200 (34.00%), Postives = 121/200 (60.50%), Query Frame = 0


Query: 1   MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKG 60
           ++E + K   S L +L + +AID++K++G VG  D  LL++IL HCT+ QL HIE+++  
Sbjct: 2   LFERLTKKPPS-LVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDD 61

Query: 61  RDLTPVTDKLWKNFYEKKFGKNDYDFVIERMK-HKKESFKWKQIYEAKMEEFEKKARKIE 120
            DL+P+TDK WK FY+K +G+ D   +IE ++ +K   FKW+ +YE K+   ++K +++ 
Sbjct: 62  TDLSPITDKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELG 121

Query: 121 ARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIE-FGCNATESKLLKKSK---- 180
            R  +  + E  +K+SRQ   C  + P   KR F G S   +     +S ++KK+K    
Sbjct: 122 GRLKERYKDENERKQSRQTKVCSKAPP--SKRPFWGNSASGYNLGHVKSNIMKKAKIDLL 181

Query: 181 REEQICEVSSMNNNKKKQSF 195
           + +++  ++++  N  ++SF
Sbjct: 182 KSQEVKNLTAIKRNTIQKSF 198

The following BLAST results are available for this feature:

BLAST of ClCG05G006090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885873.1	1.5e-84	73.84	uncharacterized protein LOC120076176 [Benincasa hispida]	[more]
XP_038885879.1	9.8e-81	71.73	uncharacterized protein LOC120076185 [Benincasa hispida]	[more]
XP_022979571.1	3.2e-55	57.08	uncharacterized protein LOC111479252 [Cucurbita maxima]	[more]
KAG6582214.1	2.1e-54	57.99	hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6582092.1	1.0e-53	57.99	hypothetical protein SDJN03_22094, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG05G006090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G006090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IR58	1.5e-55	57.08	uncharacterized protein LOC111479252 OS=Cucurbita maxima OX=3661 GN=LOC111479252...	[more]
A0A6J1ITM2	4.2e-53	57.08	uncharacterized protein LOC111479243 OS=Cucurbita maxima OX=3661 GN=LOC111479243...	[more]
A0A0A0KJR8	1.0e-43	55.68	Nudix hydrolase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G51...	[more]
A0A5D3BGR1	6.3e-41	45.98	Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ...	[more]
A0A1S4E1U0	6.3e-41	45.98	transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=36...	[more]

BLAST of ClCG05G006090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42780.1	9.6e-26	33.82	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]
AT2G42780.2	1.6e-25	34.00	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 101..121
None	No IPR available	GENE3D	6.10.250.3180		coord: 24..133 e-value: 5.3E-20 score: 73.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..205
None	No IPR available	PANTHER	PTHR47543	OS08G0169600 PROTEIN	coord: 11..176
IPR010684	RNA polymerase II transcription factor SIII, subunit A	PFAM	PF06881	Elongin_A	coord: 29..138 e-value: 1.8E-22 score: 79.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G006090.1	ClCG05G006090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
cellular_component	GO:0070449	elongin complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0047631	ADP-ribose diphosphatase activity
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0035529	NADH pyrophosphatase activity