ClCG05G003760 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG05G003760
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr05: 3518788 .. 3519279 (+)
RNA-Seq ExpressionClCG05G003760
SyntenyClCG05G003760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGATTTTTTTTTATTTTTTATTTTTTTTTTTTTAAGTTTGGATATTTTTTTAACTTTTAAAAATTCAAATTTTCTTTTTCTTTTTTTTTTTTTACACATATTACAAATATGGGGCATTTTTTTTTTAATTAATTTATTATTATTATTGTAAACAAAAACAGACACATTTCTTCGATTCTAATTATCTGCTGCAGATTGCAGCAGTTGCTCCCTCCGGCGCCGGAAAGCCGCCGTCATTAGGTTCCAATCCGGCAGATTATCTCTGATCACCGGCGCTTCCCTGAATCTTCCAGCCCAAGCATACACCCGAGGGAACTCATCGGCGTCCAACACTTTCACTCCCGTCACTTGTTCAATCATTCCCAACCAATACGCAATCCCGCCGAACGCCAAATCCGCCATTCCGATCTCATCTCCGCCGAAAAATTTCCTTTTTCCGCCGTCGAATCCCCATTCCTCGACGGTTCTCAGCATCTCCAAGCTCTGA

mRNA sequence

ATGTTTGATTTTTTTTTATTTTTTATTTTTTTTTTTTTAAATTGCAGCAGTTGCTCCCTCCGGCGCCGGAAAGCCGCCGTCATTAGGTTCCAATCCGGCAGATTATCTCTGATCACCGGCGCTTCCCTGAATCTTCCAGCCCAAGCATACACCCGAGGGAACTCATCGGCGTCCAACACTTTCACTCCCGTCACTTGTTCAATCATTCCCAACCAATACGCAATCCCGCCGAACGCCAAATCCGCCATTCCGATCTCATCTCCGCCGAAAAATTTCCTTTTTCCGCCGTCGAATCCCCATTCCTCGACGGTTCTCAGCATCTCCAAGCTCTGA

Coding sequence (CDS)

ATGTTTGATTTTTTTTTATTTTTTATTTTTTTTTTTTTAAATTGCAGCAGTTGCTCCCTCCGGCGCCGGAAAGCCGCCGTCATTAGGTTCCAATCCGGCAGATTATCTCTGATCACCGGCGCTTCCCTGAATCTTCCAGCCCAAGCATACACCCGAGGGAACTCATCGGCGTCCAACACTTTCACTCCCGTCACTTGTTCAATCATTCCCAACCAATACGCAATCCCGCCGAACGCCAAATCCGCCATTCCGATCTCATCTCCGCCGAAAAATTTCCTTTTTCCGCCGTCGAATCCCCATTCCTCGACGGTTCTCAGCATCTCCAAGCTCTGA

Protein sequence

MFDFFLFFIFFFLNCSSCSLRRRKAAVIRFQSGRLSLITGASLNLPAQAYTRGNSSASNTFTPVTCSIIPNQYAIPPNAKSAIPISSPPKNFLFPPSNPHSSTVLSISKL
Homology
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BLAST of ClCG05G003760 vs. NCBI nr
Match: CBI37230.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-07
Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 0 

Query: 27  VIRFQSGRLSLITGASLNLPAQAYTRGNSSASNTFTPVTCSIIPNQYAIPPNAKSAIPIS 86
           +I   SGR SLITG +L     A  RGN S+S +FTP   S++ +  AI P A SA PIS
Sbjct: 17  LISLWSGRFSLITGTALKFSIHACKRGNLSSSISFTPTASSMVLSHPAIHPKAMSANPIS 76

Query: 87  SPPKNFLFPPSNPHSSTVLSIS 109
           SPPKNF  P   P SS +LS S
Sbjct: 77  SPPKNFFSP--RPCSSMILSSS 96

The following BLAST results are available for this feature:
BLAST of ClCG05G003760 vs. NCBI nr
Match NameE-valueIdentityDescription
CBI37230.32.6e-0751.22unnamed protein product, partial [Vitis vinifera][more]
BLAST of ClCG05G003760 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG05G003760 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG05G003760 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G003760.1ClCG05G003760.1mRNA