ClCG05G003010 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG05G003010
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptioncytochrome c oxidase-assembly factor COX23, mitochondrial
LocationCG_Chr05: 2889591 .. 2892831 (-)
RNA-Seq ExpressionClCG05G003010
SyntenyClCG05G003010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAGGCAGCCATTTTAACCGACCTCTATTTTTCACCGAGACAGAGTGAGCTTTTCCGCCATGGCTTCCGCTTCTAGGGATCCGGCTCCGCCGTATGCCACTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTGAAATGTAGGTTCACTCTCATACTCCCCAACCGTTATTCTCAATTTTTTTCGTTTTTCTTTGATTCTCCGCCAAATATTTACGTATCTGGGCTACTAACCATTTGGATTTCTTCAACACTGGTTCACTTGAGAATGATTGCGTGCTGTGCATCAATTTTTTCGGTTTGTGTTCTGGATGGCTAAACTCTAATTTTCGTGGCGATTCTCTATGCTCTGTTAGTTGAATAATTGGTTAGCCTGTTTAATTTCCCTTTTGTAGTGATACCATACAATCTCCATCCACTTTAGGTCAATTGATGAAGAGTGAGCAAACTTAATTGTGATATTGATCGGATGATAATCTTAAAACCAAAATAGGGTTTACCAGGGTATTACTTGATAGAACGCTCGTGATAGTCCTTAGAGTGGCTGTGTTTTGAGTTCACTTACTGTTCTAACTAACTATTGCAGTAGTGGATGAACTTTTACTCGGATTTTGAAGCCGAGATATGTTAATCCTCATTGCCTTAGGGTCAAGTTCTTATTTAAAATGCCAAAGTAGGAATTACTTAGTTGGATGGTTCTTTTGCTCCAGAACTTAATTAGTTGTCATTCAACATCAGCAATCCCATCCAATTTCATTATTTGGCTAATTCTTAGAGCTGTATTTATAAGAGAGTTTTAACTTTCTGGAGGTCCCTCTATATGTTTGTTTTGATTTAGGTTTACGGATAACACCACATATAGACAGAATAATTTTTAAAAAGACGTTTAGATGTTTAATGCGGAAGTCTCAAGCTGCAACATAAGGCAAGATCGTTTATGGAAAGCATGCATAACTGGTAATGGCTGATAAGTCAGGTGTAAAGTGAAAATTTAATTTGAATTTTTAAATGAGTACTACCTGATAAAGTGCAGCTTAACCTTTGGTGTGTCATAAATCATCCAATGAGAAGTTTGGTGTTTAAAATACTAATTTTGTAGATTTTGAATTTTAATTTTTTGTCAGAGAAAATTTTGAACTTATTAGAGAAAATCTCCTTCCCAAATGTTATAGGTCTTGAAGAACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGTATTTTCTTTTCTAACTTGTTCTGTTTTTTGCCTCTTTGGGGTCTGCTCATTTGCTTGTGACGTTAATGGATCAAGGAAATTTAAATAATATCCTCATTTCATTTGGACATAATTGGATAACCAGTGTCTCATTGAGTTAGTTATATGCTCAATCTTAAAGGAATGTTAAAATATGATTTTGGTCCTCACAAAAAGTTCTATTTTGATCTTTCTGTGTTAGTAATTTCTATCTTATATATTCTATCCTAGTTAAAATCTGTAACGAAGAAGTGACTGGACTAATTTTTTTATATCAGATTTATATGCAAGTGATGTATTACATGTCTATGTTGTCTCTTCCATGTGATAACCTCTTAGTTATATGTTGATCGGCAACAAAATAGAATACCTTTTTTTTCTTTTTTCTTTTTTGTGTGTGTGTATGTATAAGTCTTTGATTCAGATTTTAATGGTAGATTGAATTTGAAATTATTGAAGCTTGAGGGTCTAAAATAAAAACTTTTTGGAACTTGGGATTTAATTTCAGGAATCCAAAATTACTCTATGACCTGAAGGATACTGTGGCATATAAGATGAGAAGTATTATGTGATTCATGATACTATGGAAACTTTAAAACCCTCTGCCTATGCATTCCATGACATTTATAAATCCCATCTGGGTTTAGTAAATATAGAAATGTTCTATAGGCTGTCATTTACTTCCTTAGTTGGTGTAGTAGAGTAGCATCATGCACCAATTCTTGATCAGACATTGCCTCTGTTTATGAAGTTTCTAACTCAGAATGAGATCTGTCTCCTTTACAGCGGGAAGCTCGATTGGAACGCAACAAGAAACGGTCTTTCTTCTCATGAAATTATCTTCAGGCGTGTTTATTGATGTTGAAGTATGTAAGTTTAAATGCAATCCACACATTTATTAACGTTCTTGTAGCAGTAGATTTTTCTGGTGCTCATTTAGACAATGACTCAGCGTGTATTGCCCTCTTACTATCATTTGTCTATTAATAAAAGATGCATACCATCTTTATATTCAATCATCTCCATGTTGATCAATTTTCATTCTTGGAAGTGTAGGAATCTGTAAACCTTGATCCTCCATTTGATCTAAATATTGCAGGCTATAATCACGCTTAACCCTAGGGCTTTAAGTGGTCAAGAATTTACGACAGCAGCTGAGGTATTTATACCCTTTTTAAGAGGGCATAAGTTAAAACCTCTGATATTATATGATAGTTCTATGAAAAAGATCGGCCGTCTATTTGAGTATCTCTTTTGAAGAATTTTTTTAGTTCAACATGTAGTATGAGAATTCAATCTTCTTACCTTTAAGTTGAAAATACACCATCTTATGTGGTTTGATATTTTTTTAAAAAAAAAATGTTTTAAATTCAATTCTCCCAACCAATGTATGAAGAAATGTCTGATATTGATTTGAGTCTTACTTGATAGGTTATTGGTTATATATGAAGTTCCTAGTGAAGATGAATTTGTTGTGTATATATTTTAATTCAATACGTGGAAATAAGAATTCAAACCACCCACTTTCTGCTCAATGTTGATTGTATGCCTTGAAGTTATGTTCACATTTGGTTAATTCTATGAAATGTCTACCTACACTAAAAAAGACGATCCTTAACTTAAAAATTGCTCTCTATATGATTACTTGCGCAAACTATTTTGCTTTGACAATTTCAGTTACGTCATTTTCCAAACCATCATGGATTGGCATAAATGGCTAAGAGGTCATGGGTTCGTAGTGCTCGATTAAGGGTTGTCAATCAACATGATTTAAATAATTTGTCGGAGAAATCAATTTTTGGATGAGTCGGCCAAGAGGAAGCGAGATGAATCATTCTTAGATCATTTTAGTCCCCTTGGGATTTATTAGTCATACCTAGCTGTGTGCAATCGTCTTGGTGATAGATTTCTACTTCATTATGGACGGACTTTGGCCTGGCCATTGATACCTTATAA

mRNA sequence

TCAGGCAGCCATTTTAACCGACCTCTATTTTTCACCGAGACAGAGTGAGCTTTTCCGCCATGGCTTCCGCTTCTAGGGATCCGGCTCCGCCGTATGCCACTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTGAAATCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGAATGAGATCTGTCTCCTTTACAGCGGGAAGCTCGATTGGAACGCAACAAGAAACGGTCTTTCTTCTCATGAAATTATCTTCAGGCGTGTTTATTGATGTTGAAGCTATAATCACGCTTAACCCTAGGGCTTTAAGTGGTCAAGAATTTACGACAGCAGCTGAGATTTCTACTTCATTATGGACGGACTTTGGCCTGGCCATTGATACCTTATAA

Coding sequence (CDS)

ATGGCTTCCGCTTCTAGGGATCCGGCTCCGCCGTATGCCACTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTGAAATCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGAATGAGATCTGTCTCCTTTACAGCGGGAAGCTCGATTGGAACGCAACAAGAAACGGTCTTTCTTCTCATGAAATTATCTTCAGGCGTGTTTATTGATGTTGAAGCTATAATCACGCTTAACCCTAGGGCTTTAAGTGGTCAAGAATTTACGACAGCAGCTGAGATTTCTACTTCATTATGGACGGACTTTGGCCTGGCCATTGATACCTTATAA

Protein sequence

MASASRDPAPPYATAARISDSPCYPQYSASLKSQRRANVKNILMFTRNARRKRMRSVSFTAGSSIGTQQETVFLLMKLSSGVFIDVEAIITLNPRALSGQEFTTAAEISTSLWTDFGLAIDTL
Homology
[Close]
BLAST of ClCG05G003010 vs. NCBI nr
Match: KAA0049122.1 (cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa] >TYK17441.1 cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-06
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLK 33
          MAS SRDPAPPYA+AARISDSPCYPQYSASLK
Sbjct: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLK 32

[Close]
BLAST of ClCG05G003010 vs. NCBI nr
Match: XP_038906947.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Benincasa hispida])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-05
Identity = 39/71 (54.93%), Postives = 42/71 (59.15%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLKSQRRAN------------VKNILMFTRN 60
          MAS SRDPAPPYA+AARISDSPCYPQYSASLK     N             K      R 
Sbjct: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHNSEKSKCREHFDVYKECKKKERE 60

[Close]
BLAST of ClCG05G003010 vs. NCBI nr
Match: XP_004133972.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus] >KGN56698.1 hypothetical protein Csa_009870 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-05
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLK 33
          MAS SRDP PPY +AARISDSPCYPQYSASLK
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLK 32

[Close]
BLAST of ClCG05G003010 vs. NCBI nr
Match: XP_022147041.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 6.0e-05
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLK 33
          MAS +RD APPYA+AARISDSPCYPQYSASLK
Sbjct: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLK 32

[Close]
BLAST of ClCG05G003010 vs. NCBI nr
Match: XP_022924627.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita moschata] >KAG6582500.1 hypothetical protein SDJN03_22502, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018885.1 hypothetical protein SDJN02_20758 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.8 bits (138), Expect = 7.8e-05
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLK 33
          MAS SRDP+PPY +AARISDSPC+PQYSASLK
Sbjct: 1  MASTSRDPSPPYPSAARISDSPCFPQYSASLK 32

[Close]
BLAST of ClCG05G003010 vs. ExPASy TrEMBL
Match: A0A5A7U004 (Cytochrome c oxidase-assembly factor COX23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003050 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLK 33
          MAS SRDPAPPYA+AARISDSPCYPQYSASLK
Sbjct: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLK 32

[Close]
BLAST of ClCG05G003010 vs. ExPASy TrEMBL
Match: A0A0A0L4K5 (CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G129550 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-05
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLK 33
          MAS SRDP PPY +AARISDSPCYPQYSASLK
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLK 32

[Close]
BLAST of ClCG05G003010 vs. ExPASy TrEMBL
Match: A0A6J1D157 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016071 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.9e-05
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLK 33
          MAS +RD APPYA+AARISDSPCYPQYSASLK
Sbjct: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLK 32

[Close]
BLAST of ClCG05G003010 vs. ExPASy TrEMBL
Match: A0A6J1E9H8 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111432060 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.8e-05
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLK 33
          MAS SRDP+PPY +AARISDSPC+PQYSASLK
Sbjct: 1  MASTSRDPSPPYPSAARISDSPCFPQYSASLK 32

[Close]
BLAST of ClCG05G003010 vs. ExPASy TrEMBL
Match: A0A6J1ITM4 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111479820 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.3e-04
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLK 33
          MAS SRDP PPY +AARISDSPC+ QYSASLK
Sbjct: 1  MASTSRDPPPPYPSAARISDSPCFLQYSASLK 32

The following BLAST results are available for this feature:
BLAST of ClCG05G003010 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0049122.13.2e-0693.75cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa] >TYK17441.... [more]
XP_038906947.11.2e-0554.93cytochrome c oxidase-assembly factor COX23, mitochondrial [Benincasa hispida][more]
XP_004133972.13.5e-0587.50cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus] >KGN... [more]
XP_022147041.16.0e-0587.50cytochrome c oxidase-assembly factor COX23, mitochondrial [Momordica charantia][more]
XP_022924627.17.8e-0584.38cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita moschata] >... [more]
BLAST of ClCG05G003010 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG05G003010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U0041.5e-0693.75Cytochrome c oxidase-assembly factor COX23 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A0A0L4K51.7e-0587.50CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G129550 PE=4 S... [more]
A0A6J1D1572.9e-0587.50cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Momordica charantia... [more]
A0A6J1E9H83.8e-0584.38cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita moschata ... [more]
A0A6J1ITM49.3e-0481.25cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita maxima OX... [more]
BLAST of ClCG05G003010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G003010.2ClCG05G003010.2mRNA