ClCG05G002470 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G002470
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	SWIB domain-containing protein
Location	CG_Chr05: 2343653 .. 2345532 (+)
RNA-Seq Expression	ClCG05G002470
Synteny	ClCG05G002470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCCCCTTCGTTTTCGGCGAGTTTCTCTCTGGTTCTTCTCCTCACTGAACCCTCCGCCGGAAACCGACTGCGACAGCCGAGCGACCTACAATGTCGTCTGGATTCACCAATGGCATTAGGGTTTTCAGAGCCTGCAGAGCTCTCTTAGCTCCGTCCAAATCCTCTGCTACCGTTCCCGCCGCCGCCGCCGCCAAATCAAAGACGACCTCGAAGCCGAAGACGGAGCCCAGGGTTAAGACTCCTCCGAGCTCCGATGCTGCTGGTGTTGCAGCCACGCCCAAGCCGAAAATCAAAAGGGAAATGACTCGACCGGCGGGGATTCTGAAGGTCACCCAGGTTTCTCCTGCGTTGAGCAACTTCTTGGGTGTATCGGAGGCTTCTCGCACTGACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCCATAACCTTCAGGTTTTTAACTTCTTTCCACTGCTATCTCCGTGTTTGATCGCGTAGACTGTTGAGTAGACGAGAACCATTGTGGTTTCTAGGGCATTGGGTGGTCTATTGATACATGTGTCCATATGAAGAAAAATTTTATTTCAAGTTAAAAAACTAGCTTCCGCTGCTTCCTTTTCTTTTCCTCCATGCTGCAAGTAAATTTAGGAACTCGTATACTCGTATGGAAAATGGGATTCTGCCTTGTCCCGGTTTAAGAGTTCATGGCAATTTATTAGAATGTAGGAAGATTATGGCTCACGAACTAGCAAAATTTTCAGTGGCATAGAAAAATGGACGTGCAAATAGGCTAAAATTCACATCCAACTTAGAAAGAAATTGATTCTCTTAATATACACTATTACCTCTGAACTGAGATGGAATCTTTACGGGAAGTGCTTGTTACAGTGTTGGAGCTTATCTAAATTGTGTAATGGCCAATTGTTCTTGCGTTTAGACTGGTAAATTCCCCATGAACCTGTTTTTAATGAAATCTTCTGTTATTTTTTCTTACTCTCTGGGGGATGAAAATCAAAATCCATGAGCTCCTTTGAAGCTTTAGAATTGAGAATCTTTCGGTGTCTAGACTTGGAAGATCTACATGATGGACTGTTTCCTGCATTAGATAAAGCTTAATACTTCCTGACGTTGACAATCCCCTCTCTTTTTCGACGAGGATACTTAACTCTTGAAAGGTTGAAACATTTGATAAAATGATTATATTATATAGTATTACTTTATAAATTGTTGAAAGTGATATTTTACTTTAAGAAATATTTGGTACTGATCCCTGAAATGTATTTGCGGGCATGATAGTTAAACCAAAGTTAACACAAGCTTGAAGATGGATTGGAGTTCATTAGTTGTGAACTCCTTTTGTGGGCTTGTTTTTTCTATGCTCTCAGACATTCTTTCATTCTTTTTTATCTCATGCAAGTTTCTTCCATATGATTTATGAGATTCTGTAGGTAAGATTGTCTGTTGGAATTTGTCGAGCTGCACCCAAGTACCCATAGTTTTCAAAGAAAAAACAAACAGCTTAGGCCTAAAGAGCTCTGTATTGTAATTTTAGTTAATAATTAGGGAGTATCTGTGATCCGAGCTATGACATAATGAGACATTTCATTGTCTTTGCCTGCAGAATCCTGCTAACAAAAGAGAGATCTACTGCGACGATAAACTTAAAGCCATATTTGAAGGAAGGGAAAAGGTCGGTTTCTTAGAGATCGGAAAATTGCTCGCTCGCCATTTTGTGAAGAACTGATGCAGGTGATGAGAGATCAACTTCCAATCCTATTCTGACTTACCTTCCCATCCCATTCATTTTGGTTGTTGATAGTCTTGTTTGGCTCATGTTTTTTTAGTCAATATGGATGAACTTCTTCCACATATTGCATTTTAAGATTTTACCCCAATG

mRNA sequence

CTGCCCCTTCGTTTTCGGCGAGTTTCTCTCTGGTTCTTCTCCTCACTGAACCCTCCGCCGGAAACCGACTGCGACAGCCGAGCGACCTACAATGTCGTCTGGATTCACCAATGGCATTAGGGTTTTCAGAGCCTGCAGAGCTCTCTTAGCTCCGTCCAAATCCTCTGCTACCGTTCCCGCCGCCGCCGCCGCCAAATCAAAGACGACCTCGAAGCCGAAGACGGAGCCCAGGGTTAAGACTCCTCCGAGCTCCGATGCTGCTGGTGTTGCAGCCACGCCCAAGCCGAAAATCAAAAGGGAAATGACTCGACCGGCGGGGATTCTGAAGGTCACCCAGGTTTCTCCTGCGTTGAGCAACTTCTTGGGTGTATCGGAGGCTTCTCGCACTGACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCCATAACCTTCAGAATCCTGCTAACAAAAGAGAGATCTACTGCGACGATAAACTTAAAGCCATATTTGAAGGAAGGGAAAAGGTCGGTTTCTTAGAGATCGGAAAATTGCTCGCTCGCCATTTTGTGAAGAACTGATGCAGGTGATGAGAGATCAACTTCCAATCCTATTCTGACTTACCTTCCCATCCCATTCATTTTGGTTGTTGATAGTCTTGTTTGGCTCATGTTTTTTTAGTCAATATGGATGAACTTCTTCCACATATTGCATTTTAAGATTTTACCCCAATG

Coding sequence (CDS)

ATGTCGTCTGGATTCACCAATGGCATTAGGGTTTTCAGAGCCTGCAGAGCTCTCTTAGCTCCGTCCAAATCCTCTGCTACCGTTCCCGCCGCCGCCGCCGCCAAATCAAAGACGACCTCGAAGCCGAAGACGGAGCCCAGGGTTAAGACTCCTCCGAGCTCCGATGCTGCTGGTGTTGCAGCCACGCCCAAGCCGAAAATCAAAAGGGAAATGACTCGACCGGCGGGGATTCTGAAGGTCACCCAGGTTTCTCCTGCGTTGAGCAACTTCTTGGGTGTATCGGAGGCTTCTCGCACTGACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCCATAACCTTCAGAATCCTGCTAACAAAAGAGAGATCTACTGCGACGATAAACTTAAAGCCATATTTGAAGGAAGGGAAAAGGTCGGTTTCTTAGAGATCGGAAAATTGCTCGCTCGCCATTTTGTGAAGAACTGA

Protein sequence

MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

Homology

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BLAST of ClCG05G002470 vs. NCBI nr
Match: XP_038877222.1 (upstream activation factor subunit UAF30 [Benincasa hispida] >XP_038877226.1 upstream activation factor subunit UAF30 [Benincasa hispida])

HSP 1 Score: 261.9 bits (668), Expect = 3.4e-66
Identity = 139/155 (89.68%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVA 60
           MSSGF+NGIRVFRACRALLAPSKSSATV AA AAKS TTSKPK + +VKTPP+SD A V+
Sbjct: 1   MSSGFSNGIRVFRACRALLAPSKSSATV-AATAAKSNTTSKPKPKSKVKTPPTSDTADVS 60

Query: 61  ATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANK 120
           ATPKPKIKRE+TRP GILKVTQVSPALSNFLGVSEASR DAVKQIWSYIKLHNLQNPANK
Sbjct: 61  ATPKPKIKREITRPTGILKVTQVSPALSNFLGVSEASRIDAVKQIWSYIKLHNLQNPANK 120

Query: 121 REIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 156
           REIYCDDKLKAIFEGREKVGFLEIGKLLA HFVKN
Sbjct: 121 REIYCDDKLKAIFEGREKVGFLEIGKLLAHHFVKN 154

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BLAST of ClCG05G002470 vs. NCBI nr
Match: XP_022146901.1 (upstream activation factor subunit spp27-like [Momordica charantia])

HSP 1 Score: 256.9 bits (655), Expect = 1.1e-64
Identity = 137/155 (88.39%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 1   MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVA 60
           MSSG +NGIRVFR CRALLAPSKSSA+VPAAAAAKSK T KPK+E + KT PSSD A  A
Sbjct: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTA-AA 60

Query: 61  ATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANK 120
           A PKPKIKREMTRPAGILKV QVSPAL NFLGV EASRTDAVKQIWSYIKLHNLQNPANK
Sbjct: 61  AAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANK 120

Query: 121 REIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 156
           REIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
Sbjct: 121 REIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 154

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BLAST of ClCG05G002470 vs. NCBI nr
Match: XP_004133931.1 (upstream activation factor subunit spp27 [Cucumis sativus] >KGN56620.1 hypothetical protein Csa_011434 [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 2.1e-63
Identity = 139/158 (87.97%), Postives = 146/158 (92.41%), Query Frame = 0


Query: 1   MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSK--PKTE-PRVKTPPSSDAA 60
           MSSGF NGIRVFRACRALLAPSKSSATVP A A KSKTTSK  PK + P+VKTPPSS AA
Sbjct: 1   MSSGFNNGIRVFRACRALLAPSKSSATVP-ATAPKSKTTSKLEPKPKLPKVKTPPSSVAA 60

Query: 61  GVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNP 120
           GVAATP+PKIK+EM+RP+GILKVTQVSPALSNFLGVSEASR+DAV QIWSYIKLHNLQNP
Sbjct: 61  GVAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNP 120

Query: 121 ANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 156
            NKREIYCDDKLKAIFEGREKVGFLEIGK LARHFVKN
Sbjct: 121 DNKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 157

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BLAST of ClCG05G002470 vs. NCBI nr
Match: XP_022980440.1 (protein TRI1-like [Cucurbita maxima])

HSP 1 Score: 248.1 bits (632), Expect = 5.1e-62
Identity = 133/155 (85.81%), Postives = 137/155 (88.39%), Query Frame = 0


Query: 1   MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVA 60
           MSSGF+NGIRVFR CRALLAPSKSSATVP  AA KS+TTSK  TEP+ KTPP SD A  A
Sbjct: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVP-PAAVKSRTTSKSNTEPKEKTPPRSDVA-AA 60

Query: 61  ATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANK 120
           A PKPK+KREMTR  G LKV QVSPAL NFLGVSEASRTDAVKQIWSYIKLHNLQNPANK
Sbjct: 61  AAPKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANK 120

Query: 121 REIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 156
           REIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Sbjct: 121 REIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

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BLAST of ClCG05G002470 vs. NCBI nr
Match: XP_008438197.1 (PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo] >XP_008438198.1 PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo])

HSP 1 Score: 248.1 bits (632), Expect = 5.1e-62
Identity = 135/157 (85.99%), Postives = 144/157 (91.72%), Query Frame = 0


Query: 1   MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTE-PRVKTPPSS-DAAG 60
           MSSGF NG+RVFRACR LLAPSKSSATVP A A KSKTT+KPKT+ P+VKTPPSS  AAG
Sbjct: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVP-ATAPKSKTTTKPKTKLPKVKTPPSSVAAAG 60

Query: 61  VAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPA 120
           VAATP+PKIK+  +RP+GILKVTQVSPALSNFLGVSEASRTDAV QIWSYIKLHNLQNP 
Sbjct: 61  VAATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPD 120

Query: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 156
           NKREIYCDDKLKAIFEGREKV FLEIGK+LARHFVKN
Sbjct: 121 NKREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 156

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BLAST of ClCG05G002470 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.1e-12
Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 74  PAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIF 133
           P    KVT +S +L++ LG  E +RT+ V+++W+YIK HNLQNP NK+EI CD+KL+ I 
Sbjct: 118 PISTRKVT-LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELIL 177

Query: 134 EGREKVGFLEIGKLLARHFVK 155
              +     E+ K+LA H  +
Sbjct: 178 --GKSTNMFEMHKILASHMTE 195

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BLAST of ClCG05G002470 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-11
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 79  KVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFE 135
           K  ++SP L+ FLG+ + SR   VK++W YIK H+LQ+P +KR I CDDKLK++FE
Sbjct: 119 KPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFE 174

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BLAST of ClCG05G002470 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-09
Identity = 41/123 (33.33%), Postives = 62/123 (50.41%), Query Frame = 0


Query: 29  PAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALS 88
           P  +  K K  S+ K++ + K   S D+  ++                 ++   +S  L 
Sbjct: 89  PLRSTRKRKGKSESKSKRKKKKNDSPDSNSIS-----------------VRKVLLSAPLQ 148

Query: 89  NFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLL 148
            FLG  E  RT  VK IW YIK H+LQNP ++REI CD+K++ IF   +K+    + KLL
Sbjct: 149 KFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIF--GKKMTMFSMNKLL 192

Query: 149 ARH 152
            +H
Sbjct: 209 TKH 192

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BLAST of ClCG05G002470 vs. ExPASy Swiss-Prot
Match: Q9P7S3 (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr3 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 28/69 (40.58%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 82  QVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGF 141
           ++S A +N LG+ E +R D V  +W YIK H LQ+   KR I CD  L+ +FE  +++ F
Sbjct: 207 KLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEA-DRLYF 266

Query: 142 LEIGKLLAR 151
             I +L+ R
Sbjct: 267 PRIPELMNR 274

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BLAST of ClCG05G002470 vs. ExPASy Swiss-Prot
Match: Q2TBN1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus OX=9913 GN=SMARCD1 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.7e-05
Identity = 23/67 (34.33%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 82  QVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGF 141
           ++ P L+  LG+   +R   ++ +W YIK H LQ+P  +  + CD  L+ IFE  +++ F
Sbjct: 296 KLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFES-QRMKF 355

Query: 142 LEIGKLL 149
            EI + L
Sbjct: 356 SEIPQRL 361

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BLAST of ClCG05G002470 vs. ExPASy TrEMBL
Match: A0A6J1D0R8 (upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=LOC111015988 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.3e-65
Identity = 137/155 (88.39%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 1   MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVA 60
           MSSG +NGIRVFR CRALLAPSKSSA+VPAAAAAKSK T KPK+E + KT PSSD A  A
Sbjct: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTA-AA 60

Query: 61  ATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANK 120
           A PKPKIKREMTRPAGILKV QVSPAL NFLGV EASRTDAVKQIWSYIKLHNLQNPANK
Sbjct: 61  AAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANK 120

Query: 121 REIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 156
           REIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
Sbjct: 121 REIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 154

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BLAST of ClCG05G002470 vs. ExPASy TrEMBL
Match: A0A0A0L3V0 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126840 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.0e-63
Identity = 139/158 (87.97%), Postives = 146/158 (92.41%), Query Frame = 0


Query: 1   MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSK--PKTE-PRVKTPPSSDAA 60
           MSSGF NGIRVFRACRALLAPSKSSATVP A A KSKTTSK  PK + P+VKTPPSS AA
Sbjct: 1   MSSGFNNGIRVFRACRALLAPSKSSATVP-ATAPKSKTTSKLEPKPKLPKVKTPPSSVAA 60

Query: 61  GVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNP 120
           GVAATP+PKIK+EM+RP+GILKVTQVSPALSNFLGVSEASR+DAV QIWSYIKLHNLQNP
Sbjct: 61  GVAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNP 120

Query: 121 ANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 156
            NKREIYCDDKLKAIFEGREKVGFLEIGK LARHFVKN
Sbjct: 121 DNKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 157

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BLAST of ClCG05G002470 vs. ExPASy TrEMBL
Match: A0A1S3AVG6 (upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC103483375 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.5e-62
Identity = 135/157 (85.99%), Postives = 144/157 (91.72%), Query Frame = 0


Query: 1   MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTE-PRVKTPPSS-DAAG 60
           MSSGF NG+RVFRACR LLAPSKSSATVP A A KSKTT+KPKT+ P+VKTPPSS  AAG
Sbjct: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVP-ATAPKSKTTTKPKTKLPKVKTPPSSVAAAG 60

Query: 61  VAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPA 120
           VAATP+PKIK+  +RP+GILKVTQVSPALSNFLGVSEASRTDAV QIWSYIKLHNLQNP 
Sbjct: 61  VAATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPD 120

Query: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 156
           NKREIYCDDKLKAIFEGREKV FLEIGK+LARHFVKN
Sbjct: 121 NKREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 156

[Close]

BLAST of ClCG05G002470 vs. ExPASy TrEMBL
Match: A0A6J1IWB1 (protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.5e-62
Identity = 133/155 (85.81%), Postives = 137/155 (88.39%), Query Frame = 0


Query: 1   MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVA 60
           MSSGF+NGIRVFR CRALLAPSKSSATVP  AA KS+TTSK  TEP+ KTPP SD A  A
Sbjct: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVP-PAAVKSRTTSKSNTEPKEKTPPRSDVA-AA 60

Query: 61  ATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANK 120
           A PKPK+KREMTR  G LKV QVSPAL NFLGVSEASRTDAVKQIWSYIKLHNLQNPANK
Sbjct: 61  AAPKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANK 120

Query: 121 REIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 156
           REIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Sbjct: 121 REIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

[Close]

BLAST of ClCG05G002470 vs. ExPASy TrEMBL
Match: A0A6J1EDA2 (upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=LOC111432134 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.4e-59
Identity = 127/155 (81.94%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 1   MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVA 60
           MSSGF+NGIRVFR C +LLAP KSSATVP   A KSKT SK   EP+ KTPP SD A  A
Sbjct: 1   MSSGFSNGIRVFRGCTSLLAPLKSSATVP-PTAVKSKTISKSNAEPKEKTPPRSDVA-AA 60

Query: 61  ATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANK 120
           A PKPK +REMTRP G+LKV QVSPAL NFLGVSEASRTDAVKQIWSYIKLHNLQNP+NK
Sbjct: 61  AAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNK 120

Query: 121 REIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 156
           REIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Sbjct: 121 REIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

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BLAST of ClCG05G002470 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 134.4 bits (337), Expect = 7.7e-32
Identity = 73/144 (50.69%), Postives = 95/144 (65.97%), Query Frame = 0


Query: 11  VFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKRE 70
           VFR  R+LLAP+  + +   +A +  K  +KPK + + K    SD+            ++
Sbjct: 8   VFRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPA----------KK 67

Query: 71  MTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLK 130
             R  GI KVT VSP L+ FLG  E SRTDA+K IW+YIK H+LQNPA+KREI+CD+ LK
Sbjct: 68  TPRSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLK 127

Query: 131 AIFEGREKVGFLEIGKLLARHFVK 155
            IFEG++KVGFLEI KLL+ HFVK
Sbjct: 128 LIFEGKDKVGFLEISKLLSPHFVK 141

[Close]

BLAST of ClCG05G002470 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 112.8 bits (281), Expect = 2.4e-25
Identity = 58/99 (58.59%), Postives = 73/99 (73.74%), Query Frame = 0


Query: 57  AGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQN 116
           A  A++   K  R+ T   GILKV  VS  L+NF+G +E SRT AVK+IW YIKL+NLQN
Sbjct: 13  AKAASSTGAKTGRQGT---GILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQN 72

Query: 117 PANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 156
           P NKREI CD++LK IF G++ VGFLEI KLL++HF K+
Sbjct: 73  PVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKS 108

[Close]

BLAST of ClCG05G002470 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-23
Identity = 50/97 (51.55%), Postives = 68/97 (70.10%), Query Frame = 0


Query: 57  AGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQN 116
           +  AA+  P    +   P GI+K   VS A+ + +GV E  RT A+K+IW+YIK H+LQ+
Sbjct: 48  SAAAASSDPTTTTKTREPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQD 107

Query: 117 PANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFV 154
           P NKR+I CD+KLK IFEG+E+VGFLEI KL+  HF+
Sbjct: 108 PQNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPHFL 144

[Close]

BLAST of ClCG05G002470 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 104.4 bits (259), Expect = 8.5e-23
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 76  GILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEG 135
           GI K   VS  L++F G  E +R  A+K++W Y+KLHNLQNPANK+EI+CDDKLK IF+G
Sbjct: 32  GIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDG 91

Query: 136 REKVGFLEIGKLLARHFVKN 156
           ++KVG  EI KLL+ HF K+
Sbjct: 92  KDKVGITEIMKLLSPHFPKS 111

[Close]

BLAST of ClCG05G002470 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-20
Identity = 54/122 (44.26%), Postives = 75/122 (61.48%), Query Frame = 0


Query: 37  KTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTR-----PAGILKVTQVSPALSNFL 96
           +  S P +  R  + P++    V A        E T      P GI+K   VSP + + +
Sbjct: 20  RNPSTPLSSLRFASHPAAKLRLVRAVTSATESSEPTATNKRVPRGIMKPRPVSPEMQDIV 79

Query: 97  GVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARH 154
            + E +RT A+K+IW+YIK H+LQ+P NKREI CD+KLK IFEGR++VGFLEI KL+  H
Sbjct: 80  ELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLIGPH 139

The following BLAST results are available for this feature:

BLAST of ClCG05G002470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877222.1	3.4e-66	89.68	upstream activation factor subunit UAF30 [Benincasa hispida] >XP_038877226.1 ups...	[more]
XP_022146901.1	1.1e-64	88.39	upstream activation factor subunit spp27-like [Momordica charantia]	[more]
XP_004133931.1	2.1e-63	87.97	upstream activation factor subunit spp27 [Cucumis sativus] >KGN56620.1 hypotheti...	[more]
XP_022980440.1	5.1e-62	85.81	protein TRI1-like [Cucurbita maxima]	[more]
XP_008438197.1	5.1e-62	85.99	PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo] >XP_0084...	[more]

BLAST of ClCG05G002470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08747	5.1e-12	44.44	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
O74503	1.5e-11	53.57	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q05024	2.3e-09	33.33	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
Q9P7S3	1.3e-07	40.58	SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 ...	[more]
Q2TBN1	2.7e-05	34.33	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]

BLAST of ClCG05G002470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D0R8	5.3e-65	88.39	upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A0A0L3V0	1.0e-63	87.97	SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126840 PE=4 S...	[more]
A0A1S3AVG6	2.5e-62	85.99	upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1IWB1	2.5e-62	85.81	protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1	[more]
A0A6J1EDA2	4.4e-59	81.94	upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of ClCG05G002470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03590.1	7.7e-32	50.69	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	2.4e-25	58.59	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	2.2e-23	51.55	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	8.5e-23	58.75	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	1.0e-20	44.26	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 77..154 e-value: 1.1E-28 score: 111.3
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 82..152 e-value: 1.4E-29 score: 101.8
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 76..154 score: 23.153255
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 71..155 e-value: 6.0E-28 score: 98.7
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 73..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..65
None	No IPR available	PANTHER	PTHR13844:SF67	PROTEIN TRI1	coord: 1..154
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 1..154
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 82..152 e-value: 1.45932E-35 score: 116.104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G002470.1	ClCG05G002470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus